AT2G28190

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011700
Physical Location & Seq
Forward (+)
12014412 .. 12016569
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28190.1

Sequence Viewer

Length: 651 bp
ATGGCTGCCACCAACACAATCCTCGCATTCTCATCTCCTTCTCGTCTTCTCATTCCTCCTTCCTCCAATCCTTCAACTCTCCGTTCCTCTTTCCGCGGCGTCTCTCTCAACAACAACAATCTCCACCGTCTCCAATCTGTTTCCTTCGCCGTTAAAGCTCCGTCGAAAGCGTTGACAGTTGTTTCCGCGGCGAAGAAGGCTGTTGCAGTGCTTAAAGGTACTTCTGATGTCGAAGGAGTTGTTACTTTGACCCAAGATGACTCAGGTCCTACAACTGTGAATGTTCGTATCACTGGTCTCACTCCAGGGCCTCATGGATTTCATCTCCATGAGTTTGGTGATACAACTAATGGATGTATCTCAACAGGACCACATTTCAACCCTAACAACATGACACACGGAGCTCCAGAAGATGAGTGCCGTCATGCGGGTGACCTGGGAAACATAAATGCCAATGCCGATGGCGTGGCAGAAACAACAATAGTGGACAATCAGATTCCTCTGACTGGTCCTAATTCTGTTGTTGGAAGAGCCTTTGTGGTTCACGAGCTTAAGGATGACCTCGGAAAGGGTGGCCATGAGCTTAGTCTGACCACTGGAAACGCAGGCGGGAGATTGGCATGTGGTGTGATTGGCTTGACGCCGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

216

Amino Acids

22.24

Weight (kDa)

6.48

Isoelectric Point (pI)

27.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 77 - 211 5.6e-50 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 646
AccII CGCG 2 cut(s) 96, 188
AciI CCGC 7 cut(s) 94, 96, 186, 188, 428, 609, 644
AcoI YGGCCR 1 cut(s) 574
AcyI GRCGYC 2 cut(s) 99, 641
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 3 cut(s) 427, 506, 568
AflII CTTAAG 1 cut(s) 551
AgsI TTSAA 2 cut(s) 75, 379
AjnI CCWGG 2 cut(s) 304, 435
AluBI AGCT 4 cut(s) 158, 404, 550, 583
AluI AGCT 4 cut(s) 158, 404, 550, 583
Alw21I GWGCWC 1 cut(s) 406
Alw26I GTCTC 3 cut(s) 106, 134, 302
AoxI GGCC 2 cut(s) 308, 574
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 4 cut(s) 266, 308, 368, 509
AsuHPI GGTGA 2 cut(s) 350, 443
AvaII GGWCC 3 cut(s) 266, 368, 509
BalI TGGCCA 1 cut(s) 576
BanII GRGCYC 1 cut(s) 406
BauI CACGAG 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 406
BccI CCATC 1 cut(s) 455
BceAI ACGGC 2 cut(s) 134, 405
BciT130I CCWGG 2 cut(s) 306, 437
BcoDI GTCTC 3 cut(s) 106, 134, 302
BfrI CTTAAG 1 cut(s) 551
BisI GCNGC 4 cut(s) 6, 97, 189, 644
BlsI GCNGC 4 cut(s) 7, 98, 190, 645
Bme1390I CCNGG 2 cut(s) 306, 437
Bme18I GGWCC 3 cut(s) 266, 368, 509
BmgT120I GGNCC 4 cut(s) 266, 308, 368, 509
BmrFI CCNGG 2 cut(s) 306, 437
BoxI GACNNNNGTC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 288, 390
BsaHI GRCGYC 2 cut(s) 99, 641
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 5 cut(s) 94, 186, 305, 436, 562
Bsc4I CCNNNNNNNGG 3 cut(s) 427, 506, 568
Bse1I ACTGG 3 cut(s) 298, 511, 601
BseBI CCWGG 2 cut(s) 306, 437
BseDI CCNNGG 5 cut(s) 94, 186, 305, 436, 562
BseGI GGATG 2 cut(s) 359, 562
BseLI CCNNNNNNNGG 3 cut(s) 427, 506, 568
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 3 cut(s) 298, 511, 601
Bsh1236I CGCG 2 cut(s) 96, 188
BshFI GGCC 2 cut(s) 310, 576
BsiHKAI GWGCWC 1 cut(s) 406
BslI CCNNNNNNNGG 3 cut(s) 427, 506, 568
BsmAI GTCTC 3 cut(s) 106, 134, 302
BsmBI CGTCTC 2 cut(s) 106, 134
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 2 cut(s) 310, 576
Bso31I GGTCTC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 406
BspACI CCGC 7 cut(s) 94, 96, 186, 188, 428, 609, 644
BspANI GGCC 2 cut(s) 310, 576
BspCNI CTCAG 1 cut(s) 275
BspFNI CGCG 2 cut(s) 96, 188
BspQI GCTCTTC 1 cut(s) 523
BspTI CTTAAG 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 646
BsrI ACTGG 3 cut(s) 298, 511, 601
BssECI CCNNGG 5 cut(s) 94, 186, 305, 436, 562
BssNI GRCGYC 2 cut(s) 99, 641
BssSI CACGAG 1 cut(s) 545
Bst2BI CACGAG 1 cut(s) 545
Bst2UI CCWGG 2 cut(s) 306, 437
Bst4CI ACNGT 3 cut(s) 128, 178, 277
Bst6I CTCTTC 1 cut(s) 523
BstACI GRCGYC 2 cut(s) 99, 641
BstAFI CTTAAG 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 607
BstDEI CTNAG 2 cut(s) 262, 584
BstDSI CCRYGG 2 cut(s) 94, 186
BstEII GGTNACC 1 cut(s) 431
BstENI CCTNNNNNAGG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 359, 562
BstFNI CGCG 2 cut(s) 96, 188
BstMAI GTCTC 3 cut(s) 106, 134, 302
BstMWI GCNNNNNNNGC 2 cut(s) 155, 197
BstNI CCWGG 2 cut(s) 306, 437
BstNSI RCATGY 1 cut(s) 624
BstPAI GACNNNNGTC 1 cut(s) 264
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 304, 435
BstUI CGCG 2 cut(s) 96, 188
BstV2I GAAGAC 1 cut(s) 38
BstXI CCANNNNNNTGG 1 cut(s) 335
BsuRI GGCC 2 cut(s) 310, 576
BtgI CCRYGG 2 cut(s) 94, 186
BtsCI GGATG 2 cut(s) 359, 562
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 3 cut(s) 213, 291, 594
Cac8I GCNNGC 1 cut(s) 607
Cfr13I GGNCC 4 cut(s) 266, 308, 368, 509
Cfr42I CCGCGG 2 cut(s) 97, 189
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 219
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviAII CATG 6 cut(s) 314, 329, 391, 425, 578, 621
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 2 cut(s) 262, 584
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 1 cut(s) 523
EarI CTCTTC 1 cut(s) 523
Ecl136II GAGCTC 1 cut(s) 404
Eco24I GRGCYC 1 cut(s) 406
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 3 cut(s) 266, 368, 509
Eco53kI GAGCTC 1 cut(s) 404
Eco91I GGTNACC 1 cut(s) 431
EcoICRI GAGCTC 1 cut(s) 404
EcoNI CCTNNNNNAGG 1 cut(s) 566
EcoO109I RGGNCCY 2 cut(s) 266, 308
EcoO65I GGTNACC 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 304, 435
EcoT38I GRGCYC 1 cut(s) 406
Esp3I CGTCTC 2 cut(s) 106, 134
FaeI CATG 6 cut(s) 317, 332, 394, 428, 581, 624
FaiI YATR 7 cut(s) 315, 330, 392, 426, 446, 579, 622
FatI CATG 6 cut(s) 313, 328, 390, 424, 577, 620
FauI CCCGC 2 cut(s) 421, 602
Fnu4HI GCNGC 4 cut(s) 6, 97, 189, 644
FokI GGATG 2 cut(s) 366, 569
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 4 cut(s) 6, 97, 189, 644
GluI GCNGC 4 cut(s) 6, 97, 189, 644
GsuI CTGGAG 2 cut(s) 288, 390
HaeIII GGCC 2 cut(s) 310, 576
HgaI GACGC 1 cut(s) 88
Hin1I GRCGYC 2 cut(s) 99, 641
Hin1II CATG 6 cut(s) 317, 332, 394, 428, 581, 624
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 2 cut(s) 260, 496
HphI GGTGA 2 cut(s) 350, 443
Hpy166II GTNNAC 3 cut(s) 174, 487, 544
Hpy188I TCNGA 5 cut(s) 226, 495, 504, 566, 591
Hpy188III TCNNGA 2 cut(s) 407, 545
Hpy8I GTNNAC 3 cut(s) 174, 487, 544
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 6 cut(s) 48, 69, 81, 154, 190, 227
HpyCH4III ACNGT 3 cut(s) 128, 178, 277
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 197
HpyF3I CTNAG 2 cut(s) 262, 584
Hsp92I GRCGYC 2 cut(s) 99, 641
Hsp92II CATG 6 cut(s) 317, 332, 394, 428, 581, 624
KspI CCGCGG 2 cut(s) 97, 189
LguI GCTCTTC 1 cut(s) 523
LmnI GCTCC 3 cut(s) 163, 401, 409
MaeIII GTNAC 2 cut(s) 241, 431
MbiI CCGCTC 1 cut(s) 646
MboII GAAGA 4 cut(s) 38, 205, 422, 540
MhlI GDGCHC 1 cut(s) 406
MlsI TGGCCA 1 cut(s) 576
MluCI AATT 1 cut(s) 514
MluNI TGGCCA 1 cut(s) 576
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 7 cut(s) 32, 66, 73, 97, 321, 510, 572
Mox20I TGGCCA 1 cut(s) 576
MscI TGGCCA 1 cut(s) 576
MseI TTAA 3 cut(s) 153, 213, 552
MslI CAYNNNNRTG 2 cut(s) 327, 429
Msp20I TGGCCA 1 cut(s) 576
MspA1I CMGCKG 2 cut(s) 96, 188
MspCI CTTAAG 1 cut(s) 551
MspR9I CCNGG 2 cut(s) 306, 437
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 2 cut(s) 306, 437
MvnI CGCG 2 cut(s) 96, 188
MwoI GCNNNNNNNGC 2 cut(s) 155, 197
NlaIII CATG 6 cut(s) 317, 332, 394, 428, 581, 624
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 1 cut(s) 624
PciSI GCTCTTC 1 cut(s) 523
PctI GAATGC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 496
PkrI GCNGC 4 cut(s) 7, 98, 190, 645
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PpuMI RGGWCCY 1 cut(s) 266
PshAI GACNNNNGTC 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 406
Psp5II RGGWCCY 1 cut(s) 266
Psp6I CCWGG 2 cut(s) 304, 435
PspEI GGTNACC 1 cut(s) 431
PspGI CCWGG 2 cut(s) 304, 435
PspPI GGNCC 4 cut(s) 266, 308, 368, 509
PspPPI RGGWCCY 1 cut(s) 266
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 2 cut(s) 327, 429
SacI GAGCTC 1 cut(s) 406
SacII CCGCGG 2 cut(s) 97, 189
SapI GCTCTTC 1 cut(s) 523
SaqAI TTAA 3 cut(s) 153, 213, 552
SatI GCNGC 4 cut(s) 6, 97, 189, 644
Sau96I GGNCC 4 cut(s) 266, 308, 368, 509
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 2 cut(s) 306, 437
SduI GDGCHC 1 cut(s) 406
SetI ASST 8 cut(s) 160, 220, 268, 406, 438, 552, 564, 585
Sfr303I CCGCGG 2 cut(s) 97, 189
SgrBI CCGCGG 2 cut(s) 97, 189
SinI GGWCC 3 cut(s) 266, 368, 509
SmiMI CAYNNNNRTG 2 cut(s) 327, 429
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 1 cut(s) 514
SsiI CCGC 7 cut(s) 94, 96, 186, 188, 428, 609, 644
SstI GAGCTC 1 cut(s) 406
StyD4I CCNGG 2 cut(s) 304, 435
TaaI ACNGT 3 cut(s) 128, 178, 277
TaqI TCGA 2 cut(s) 164, 231
TasI AATT 1 cut(s) 514
TauI GCSGC 3 cut(s) 99, 191, 646
TfiI GAWTC 1 cut(s) 496
Tru1I TTAA 3 cut(s) 153, 213, 552
Tru9I TTAA 3 cut(s) 153, 213, 552
TscAI CASTG 3 cut(s) 213, 298, 601
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 1 cut(s) 311
TspGWI ACGGA 3 cut(s) 71, 150, 414
TspRI CASTG 3 cut(s) 213, 298, 601
Vha464I CTTAAG 1 cut(s) 551
VpaK11BI GGWCC 3 cut(s) 266, 368, 509
XagI CCTNNNNNAGG 1 cut(s) 566
XceI RCATGY 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.