Rh5DG396700

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011700
Physical Location & Seq
Reverse (-)
62421520 .. 62430550
9031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG396700.1

Sequence Viewer

Length: 477 bp
ATGCTCAAATACTTCTTCTCTGTCTTGTGGATCCATTATTGGGATTCTTATGGGGAAATGACTGCTCAATCCTACTGTCTTGTATTGTTTGTAGGTCCTACAACTGTGAATGTTCGTATTACTGGACTTACACCTGGGCCTCATGGGTTCCACTTGCATGAGTTTGGTGACACGACAAATGGATGCATTTCCACAGGAGCACATTTCAATCCTAAAAACTTGACTCATGGAGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAATTGCTAATGCCGATGGAGTGGCAGAGGCAACAATCGTGGATAGCCAGATACCATTAACTGGTCCTAATGCTGTAATTGGAAGAGCCTTGGTGGTTCATGAACTTGAGGATGACCTTGGAAAGGGTGGACATGAACTTAGTCTAAGCACTGGCAATGCAGGTGGACGATTGGCATGTGGTAAGCAAGCAGTTTTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

158

Amino Acids

16.76

Weight (kDa)

5.44

Isoelectric Point (pI)

20.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 33 - 152 9.7e-46 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 425
Acc36I ACCTGC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 335
AciI CCGC 1 cut(s) 257
AclWI GGATC 2 cut(s) 25, 38
AfiI CCNNNNNNNGG 4 cut(s) 40, 256, 335, 397
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 2 cut(s) 133, 264
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw21I GWGCWC 2 cut(s) 202, 235
AlwI GGATC 2 cut(s) 25, 38
AoxI GGCC 1 cut(s) 137
AspS9I GGNCC 3 cut(s) 95, 137, 338
AsuHPI GGTGA 2 cut(s) 179, 272
AvaII GGWCC 2 cut(s) 95, 338
AxyI CCTNAGG 1 cut(s) 237
BamHI GGATCC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 235
Bbv12I GWGCWC 2 cut(s) 202, 235
BccI CCATC 1 cut(s) 284
BciT130I CCWGG 2 cut(s) 135, 266
BfuAI ACCTGC 1 cut(s) 425
Bme1390I CCNGG 2 cut(s) 135, 266
Bme18I GGWCC 2 cut(s) 95, 338
BmgT120I GGNCC 3 cut(s) 95, 137, 338
BmiI GGNNCC 2 cut(s) 32, 149
BmrFI CCNGG 2 cut(s) 135, 266
BmsI GCATC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 401
BsaJI CCNNGG 4 cut(s) 134, 265, 363, 391
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 256, 335, 397
Bse1I ACTGG 3 cut(s) 127, 340, 430
Bse21I CCTNAGG 1 cut(s) 237
Bse3DI GCAATG 1 cut(s) 436
BseBI CCWGG 2 cut(s) 135, 266
BseDI CCNNGG 4 cut(s) 134, 265, 363, 391
BseGI GGATG 3 cut(s) 188, 247, 391
BseLI CCNNNNNNNGG 4 cut(s) 40, 256, 335, 397
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 3 cut(s) 127, 340, 430
BshFI GGCC 1 cut(s) 139
BsiHKAI GWGCWC 2 cut(s) 202, 235
BslI CCNNNNNNNGG 4 cut(s) 40, 256, 335, 397
BsnI GGCC 1 cut(s) 139
Bsp1286I GDGCHC 2 cut(s) 202, 235
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 2 cut(s) 32, 149
BspMI ACCTGC 1 cut(s) 425
BspPI GGATC 2 cut(s) 25, 38
BspQI GCTCTTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 436
BsrI ACTGG 3 cut(s) 127, 340, 430
BssECI CCNNGG 4 cut(s) 134, 265, 363, 391
BssMI GATC 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 363, 391
Bst2UI CCWGG 2 cut(s) 135, 266
Bst4CI ACNGT 2 cut(s) 77, 106
Bst6I CTCTTC 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 3 cut(s) 237, 413, 419
BstEII GGTNACC 1 cut(s) 260
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 3 cut(s) 188, 247, 391
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstNI CCWGG 2 cut(s) 135, 266
BstNSI RCATGY 1 cut(s) 453
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 2 cut(s) 133, 264
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 3 cut(s) 188, 247, 391
BtsIMutI CAGTG 1 cut(s) 423
BveI ACCTGC 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 462
CciI TCATGA 1 cut(s) 373
Cfr13I GGNCC 3 cut(s) 95, 137, 338
CspCI CAANNNNNGTGG 4 cut(s) 294, 329, 418, 453
CviAII CATG 7 cut(s) 143, 158, 227, 254, 374, 407, 450
CviJI RGCY 4 cut(s) 139, 233, 321, 362
CviKI_1 RGCY 4 cut(s) 139, 233, 321, 362
DdeI CTNAG 3 cut(s) 237, 413, 419
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 233
Eco130I CCWWGG 2 cut(s) 363, 391
Eco24I GRGCYC 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 95, 338
Eco53kI GAGCTC 1 cut(s) 233
Eco81I CCTNAGG 1 cut(s) 237
Eco91I GGTNACC 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 233
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 133, 264
EcoT14I CCWWGG 2 cut(s) 363, 391
EcoT22I ATGCAT 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 363, 391
FaeI CATG 7 cut(s) 146, 161, 230, 257, 377, 410, 453
FaiI YATR 9 cut(s) 51, 144, 159, 228, 255, 275, 375, 408, 451
FatI CATG 7 cut(s) 142, 157, 226, 253, 373, 406, 449
FauI CCCGC 1 cut(s) 250
FokI GGATG 3 cut(s) 195, 254, 398
FriOI GRGCYC 1 cut(s) 235
HaeIII GGCC 1 cut(s) 139
Hin1II CATG 7 cut(s) 146, 161, 230, 257, 377, 410, 453
HinfI GANTC 2 cut(s) 44, 223
HphI GGTGA 2 cut(s) 179, 272
Hpy166II GTNNAC 2 cut(s) 404, 440
Hpy188III TCNNGA 2 cut(s) 236, 374
Hpy8I GTNNAC 2 cut(s) 404, 440
HpyCH4III ACNGT 2 cut(s) 77, 106
HpyCH4V TGCA 3 cut(s) 157, 186, 434
HpyF3I CTNAG 3 cut(s) 237, 413, 419
Hsp92II CATG 7 cut(s) 146, 161, 230, 257, 377, 410, 453
Kzo9I GATC 1 cut(s) 30
LguI GCTCTTC 1 cut(s) 352
LmnI GCTCC 3 cut(s) 197, 230, 238
LweI GCATC 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 167, 260
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 7, 369
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 202, 235
MluCI AATT 2 cut(s) 276, 351
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 4 cut(s) 150, 232, 295, 376
Mph1103I ATGCAT 1 cut(s) 188
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 2 cut(s) 156, 258
MspR9I CCNGG 2 cut(s) 135, 266
MvaI CCWGG 2 cut(s) 135, 266
NdeII GATC 1 cut(s) 30
NlaIII CATG 7 cut(s) 146, 161, 230, 257, 377, 410, 453
NlaIV GGNNCC 2 cut(s) 32, 149
NmuCI GTSAC 2 cut(s) 167, 260
NsiI ATGCAT 1 cut(s) 188
NspI RCATGY 1 cut(s) 453
PagI TCATGA 1 cut(s) 373
PaqCI CACCTGC 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 44
PflMI CCANNNNNTGG 1 cut(s) 335
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 95
Psp124BI GAGCTC 1 cut(s) 235
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 133, 264
PspEI GGTNACC 1 cut(s) 260
PspGI CCWGG 2 cut(s) 133, 264
PspN4I GGNNCC 2 cut(s) 32, 149
PspPI GGNCC 3 cut(s) 95, 137, 338
PspPPI RGGWCCY 1 cut(s) 95
PsuI RGATCY 1 cut(s) 30
RseI CAYNNNNRTG 2 cut(s) 156, 258
SacI GAGCTC 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 352
SaqAI TTAA 1 cut(s) 332
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 3 cut(s) 95, 137, 338
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 135, 266
SduI GDGCHC 2 cut(s) 202, 235
SetI ASST 6 cut(s) 97, 136, 235, 267, 393, 439
SfaNI GCATC 1 cut(s) 173
SinI GGWCC 2 cut(s) 95, 338
SmiMI CAYNNNNRTG 2 cut(s) 156, 258
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 2 cut(s) 276, 351
SsiI CCGC 1 cut(s) 257
SstI GAGCTC 1 cut(s) 235
StyD4I CCNGG 2 cut(s) 133, 264
StyI CCWWGG 2 cut(s) 363, 391
TaaI ACNGT 2 cut(s) 77, 106
TasI AATT 2 cut(s) 276, 351
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 2 cut(s) 167, 260
Tsp45I GTSAC 2 cut(s) 167, 260
TspDTI ATGAA 4 cut(s) 258, 362, 390, 423
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 430
Van91I CCANNNNNTGG 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 95, 338
XagI CCTNNNNNAGG 1 cut(s) 395
XceI RCATGY 1 cut(s) 453
Zsp2I ATGCAT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.