Rh5AG371800

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011700
Physical Location & Seq
Reverse (-)
63160428 .. 63169461
9034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG371800.1

Sequence Viewer

Length: 672 bp
ATGCAAGCAGCACTGGCGGCCATGGCAGCCCACTCTGTGATACTCTCAGCCTACACATCCCCCACTCTCTTCGCCCCAATTCAAACCCCTAACCCCCACCCAACTCTCCACTCCTCCTTCCATGGCGTCTCTCTCAAGCTCCCCATCAAATCCCAATCCCAATCCATGTCTCTCGCCGCCGCCGCCCCCAAGCCCCTCACCGTCGTCGCCGCCACCAAGAAGGCCGTCGCCGTTCTCAAGGGCACTTCAACCGTCGAAGGCGTCGTTACCTTGACCCAAGAAGATGACGGTCCTACAACTGTGAATGTTCGTATTACTGGACTTACACCTGGGCCTCATGGGTTCCACTTGCATGAGTTTGGTGACACAACAAATGGATGCATTTCCACAGGAGCACATTTCAATCCTAAAAAGTTGACTCATGGAGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAATTGCTAATGCTGATGGAGTGGCAGAGGCAACAATCGTGGATAGCCAGATACCATTAACTGGTCCTAATGCTGTAATTGGAAGAGCCTTGGTGGTTCATGAACTTGAGGATGACCTTGGAAAGGGTGGACATGAACTTAGTCTAAGCACTGGCAATGCAGGTGGACGATTGGCATGTGGTAAGCAAGCAATTTTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

223

Amino Acids

22.83

Weight (kDa)

6.28

Isoelectric Point (pI)

23.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 85 - 217 1.4e-48 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 620
Acc36I ACCTGC 1 cut(s) 620
AccB7I CCANNNNNTGG 1 cut(s) 530
AciI CCGC 6 cut(s) 17, 177, 180, 183, 210, 452
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 2 cut(s) 126, 261
AdeI CACNNNGTG 1 cut(s) 37
AfiI CCNNNNNNNGG 3 cut(s) 451, 530, 592
AgsI TTSAA 3 cut(s) 83, 249, 403
AjnI CCWGG 2 cut(s) 328, 459
AluBI AGCT 2 cut(s) 139, 428
AluI AGCT 2 cut(s) 139, 428
Alw21I GWGCWC 2 cut(s) 397, 430
Alw26I GTCTC 2 cut(s) 133, 174
AoxI GGCC 3 cut(s) 18, 222, 332
ApeKI GCWGC 2 cut(s) 8, 26
AspS9I GGNCC 3 cut(s) 290, 332, 533
AsuHPI GGTGA 3 cut(s) 190, 374, 467
AvaII GGWCC 2 cut(s) 290, 533
AxyI CCTNAGG 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 430
Bbv12I GWGCWC 2 cut(s) 397, 430
BbvI GCAGC 2 cut(s) 20, 38
BccI CCATC 2 cut(s) 152, 479
BceAI ACGGC 2 cut(s) 209, 215
BciT130I CCWGG 2 cut(s) 330, 461
BcoDI GTCTC 2 cut(s) 133, 174
BfuAI ACCTGC 1 cut(s) 620
BisI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 183, 210
BlsI GCNGC 7 cut(s) 10, 19, 28, 178, 181, 184, 211
Bme1390I CCNGG 2 cut(s) 330, 461
Bme18I GGWCC 2 cut(s) 290, 533
BmgT120I GGNCC 3 cut(s) 290, 332, 533
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 2 cut(s) 330, 461
BmsI GCATC 1 cut(s) 368
BpuEI CTTGAG 3 cut(s) 119, 221, 596
BsaHI GRCGYC 2 cut(s) 126, 261
BsaJI CCNNGG 6 cut(s) 21, 121, 329, 460, 558, 586
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 530, 592
Bse1I ACTGG 4 cut(s) 18, 322, 535, 625
Bse21I CCTNAGG 1 cut(s) 432
Bse3DI GCAATG 1 cut(s) 631
BseBI CCWGG 2 cut(s) 330, 461
BseDI CCNNGG 6 cut(s) 21, 121, 329, 460, 558, 586
BseGI GGATG 4 cut(s) 56, 383, 442, 586
BseLI CCNNNNNNNGG 3 cut(s) 451, 530, 592
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 2 cut(s) 60, 423
BseNI ACTGG 4 cut(s) 18, 322, 535, 625
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 2 cut(s) 20, 38
BshFI GGCC 3 cut(s) 20, 224, 334
BsiHKAI GWGCWC 2 cut(s) 397, 430
BslI CCNNNNNNNGG 3 cut(s) 451, 530, 592
BsmAI GTCTC 2 cut(s) 133, 174
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 3 cut(s) 20, 224, 334
Bsp1286I GDGCHC 3 cut(s) 245, 397, 430
Bsp19I CCATGG 2 cut(s) 21, 121
BspACI CCGC 6 cut(s) 17, 177, 180, 183, 210, 452
BspANI GGCC 3 cut(s) 20, 224, 334
BspCNI CTCAG 2 cut(s) 59, 424
BspHI TCATGA 1 cut(s) 568
BspLI GGNNCC 1 cut(s) 344
BspMI ACCTGC 1 cut(s) 620
BspQI GCTCTTC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 631
BsrI ACTGG 4 cut(s) 18, 322, 535, 625
BssECI CCNNGG 6 cut(s) 21, 121, 329, 460, 558, 586
BssNI GRCGYC 2 cut(s) 126, 261
BssT1I CCWWGG 4 cut(s) 21, 121, 558, 586
Bst2UI CCWGG 2 cut(s) 330, 461
Bst4CI ACNGT 4 cut(s) 202, 253, 290, 301
Bst6I CTCTTC 2 cut(s) 74, 547
BstACI GRCGYC 2 cut(s) 126, 261
BstC8I GCNNGC 2 cut(s) 6, 657
BstDEI CTNAG 4 cut(s) 46, 432, 608, 614
BstDSI CCRYGG 2 cut(s) 21, 121
BstEII GGTNACC 1 cut(s) 455
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 4 cut(s) 56, 383, 442, 586
BstMAI GTCTC 2 cut(s) 133, 174
BstMWI GCNNNNNNNGC 5 cut(s) 14, 17, 23, 26, 182
BstNI CCWGG 2 cut(s) 330, 461
BstNSI RCATGY 1 cut(s) 648
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 328, 459
BstSLI GKGCMC 1 cut(s) 245
BstV1I GCAGC 2 cut(s) 20, 38
Bsu36I CCTNAGG 1 cut(s) 432
BsuRI GGCC 3 cut(s) 20, 224, 334
BtgI CCRYGG 2 cut(s) 21, 121
BtsCI GGATG 4 cut(s) 56, 383, 442, 586
BtsIMutI CAGTG 2 cut(s) 11, 618
BveI ACCTGC 1 cut(s) 620
Cac8I GCNNGC 2 cut(s) 6, 657
CciI TCATGA 1 cut(s) 568
Cfr13I GGNCC 3 cut(s) 290, 332, 533
CseI GACGC 2 cut(s) 115, 250
CspCI CAANNNNNGTGG 4 cut(s) 489, 524, 613, 648
DdeI CTNAG 4 cut(s) 46, 432, 608, 614
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 74, 547
EarI CTCTTC 2 cut(s) 74, 547
Ecl136II GAGCTC 1 cut(s) 428
Eco130I CCWWGG 4 cut(s) 21, 121, 558, 586
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 2 cut(s) 290, 533
Eco53kI GAGCTC 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 432
Eco91I GGTNACC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 428
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 455
EcoRII CCWGG 2 cut(s) 328, 459
EcoT14I CCWWGG 4 cut(s) 21, 121, 558, 586
EcoT22I ATGCAT 1 cut(s) 383
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 4 cut(s) 21, 121, 558, 586
Esp3I CGTCTC 1 cut(s) 133
FauI CCCGC 1 cut(s) 445
Fnu4HI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 183, 210
FokI GGATG 4 cut(s) 43, 390, 449, 593
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 183, 210
GluI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 183, 210
HaeIII GGCC 3 cut(s) 20, 224, 334
HgaI GACGC 2 cut(s) 115, 250
Hin1I GRCGYC 2 cut(s) 126, 261
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 1 cut(s) 418
HphI GGTGA 3 cut(s) 190, 374, 467
Hpy166II GTNNAC 3 cut(s) 417, 599, 635
Hpy188III TCNNGA 2 cut(s) 431, 569
Hpy8I GTNNAC 3 cut(s) 417, 599, 635
Hpy99I CGWCG 5 cut(s) 206, 209, 230, 257, 266
HpyAV CCTTC 3 cut(s) 127, 214, 251
HpyCH4III ACNGT 4 cut(s) 202, 253, 290, 301
HpyCH4V TGCA 4 cut(s) 4, 352, 381, 629
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 17, 23, 26, 182
HpyF3I CTNAG 4 cut(s) 46, 432, 608, 614
Hsp92I GRCGYC 2 cut(s) 126, 261
LguI GCTCTTC 1 cut(s) 547
LmnI GCTCC 4 cut(s) 144, 392, 425, 433
Lsp1109I GCAGC 2 cut(s) 20, 38
LweI GCATC 1 cut(s) 368
MaeIII GTNAC 3 cut(s) 265, 362, 455
MboII GAAGA 3 cut(s) 61, 293, 564
MhlI GDGCHC 3 cut(s) 245, 397, 430
MluCI AATT 4 cut(s) 78, 471, 546, 660
MlyI GAGTC 1 cut(s) 412
MnlI CCTC 6 cut(s) 124, 206, 345, 427, 490, 571
Mph1103I ATGCAT 1 cut(s) 383
MseI TTAA 1 cut(s) 527
MslI CAYNNNNRTG 2 cut(s) 351, 453
MspR9I CCNGG 2 cut(s) 330, 461
MvaI CCWGG 2 cut(s) 330, 461
MwoI GCNNNNNNNGC 5 cut(s) 14, 17, 23, 26, 182
NcoI CCATGG 2 cut(s) 21, 121
NlaIV GGNNCC 1 cut(s) 344
NmuCI GTSAC 2 cut(s) 362, 455
NsiI ATGCAT 1 cut(s) 383
NspI RCATGY 1 cut(s) 648
PagI TCATGA 1 cut(s) 568
PaqCI CACCTGC 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PflMI CCANNNNNTGG 1 cut(s) 530
PkrI GCNGC 7 cut(s) 10, 19, 28, 178, 181, 184, 211
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 328, 459
PspEI GGTNACC 1 cut(s) 455
PspGI CCWGG 2 cut(s) 328, 459
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 3 cut(s) 290, 332, 533
RseI CAYNNNNRTG 2 cut(s) 351, 453
SacI GAGCTC 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 547
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 183, 210
Sau96I GGNCC 3 cut(s) 290, 332, 533
SchI GAGTC 1 cut(s) 412
ScrFI CCNGG 2 cut(s) 330, 461
SduI GDGCHC 3 cut(s) 245, 397, 430
SetI ASST 7 cut(s) 141, 272, 331, 430, 462, 588, 634
SfaNI GCATC 1 cut(s) 368
SinI GGWCC 2 cut(s) 290, 533
SmiMI CAYNNNNRTG 2 cut(s) 351, 453
SmlI CTYRAG 3 cut(s) 134, 236, 575
SmoI CTYRAG 3 cut(s) 134, 236, 575
Sse9I AATT 4 cut(s) 78, 471, 546, 660
SsiI CCGC 6 cut(s) 17, 177, 180, 183, 210, 452
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 2 cut(s) 328, 459
StyI CCWWGG 4 cut(s) 21, 121, 558, 586
TaaI ACNGT 4 cut(s) 202, 253, 290, 301
TaqI TCGA 1 cut(s) 255
TasI AATT 4 cut(s) 78, 471, 546, 660
TauI GCSGC 5 cut(s) 20, 179, 182, 185, 212
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TscAI CASTG 2 cut(s) 18, 625
TseFI GTSAC 2 cut(s) 362, 455
TseI GCWGC 2 cut(s) 8, 26
Tsp45I GTSAC 2 cut(s) 362, 455
TspDTI ATGAA 4 cut(s) 453, 557, 585, 618
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 2 cut(s) 18, 625
Van91I CCANNNNNTGG 1 cut(s) 530
VpaK11BI GGWCC 2 cut(s) 290, 533
XagI CCTNNNNNAGG 1 cut(s) 590
XceI RCATGY 1 cut(s) 648
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.