Rh5BG383700

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011700
Physical Location & Seq
Reverse (-)
60998710 .. 61007530
8821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG383700.1

Sequence Viewer

Length: 672 bp
ATGCAAGCAGCACTGGCGGCCATGGCAGCCCACTCTGTGATACTCTCAGCCTACACATCCCCCACTCTCTTCGCCCCAATTCAAACCCCTAACCCCCACCCGACTCTCCACTCCTCCTTCCATGGCGTCTCTCTCAGGCTCCCCATCAAATCCCAATCCCAATCCATGTCTCTCGCCGCCGCCCCCAAGCCCCTCACCGTCGTCGCCGCAGCCACCAAGAAGGCCGTCGCCGTTCTCAAGGGCACTTCAACCGTCGAAGGCGTCGTTACCTTGACCCAACAAGATGACGGTCCTACAACTGTGAATGTTCGTATTACTGGACTTACACCTGGGCCTCTTGGGTTCCACTTGCATGAGTTTGGTGACACGACAAATGGATGCATTTCCACAGGAGCACATTTCAATCCTAAAAACTTGACTCATGGAGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAATTGCTAATGCCGATGGAGTGGCAGAGGCAACAATCGTGGATAGCCAGATACCATTAACTGGTCCTAATGCTGTAATTGGAAGAGCCTTGGTGGTTCATGAACTTGAGGATGACCTTGGAAAGGGTGGACATGAACTTAGTCTAAGCACTGGCAATGCAGGTGGACGATTGGCATGTGGTAAGCAAGCAGTTTTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

223

Amino Acids

22.77

Weight (kDa)

6.23

Isoelectric Point (pI)

25.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 85 - 217 2e-47 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 620
Acc36I ACCTGC 1 cut(s) 620
AccB7I CCANNNNNTGG 1 cut(s) 530
AciI CCGC 5 cut(s) 17, 177, 180, 207, 452
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 2 cut(s) 126, 261
AdeI CACNNNGTG 1 cut(s) 37
AfiI CCNNNNNNNGG 3 cut(s) 451, 530, 592
AgsI TTSAA 3 cut(s) 83, 249, 403
AjnI CCWGG 2 cut(s) 328, 459
AluBI AGCT 1 cut(s) 428
AluI AGCT 1 cut(s) 428
Alw21I GWGCWC 2 cut(s) 397, 430
Alw26I GTCTC 2 cut(s) 133, 174
AoxI GGCC 3 cut(s) 18, 222, 332
ApeKI GCWGC 3 cut(s) 8, 26, 209
AspS9I GGNCC 3 cut(s) 290, 332, 533
AsuHPI GGTGA 3 cut(s) 187, 374, 467
AvaII GGWCC 2 cut(s) 290, 533
AxyI CCTNAGG 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 430
Bbv12I GWGCWC 2 cut(s) 397, 430
BbvI GCAGC 3 cut(s) 20, 38, 221
BccI CCATC 2 cut(s) 152, 479
BceAI ACGGC 2 cut(s) 209, 215
BciT130I CCWGG 2 cut(s) 330, 461
BcoDI GTCTC 2 cut(s) 133, 174
BfuAI ACCTGC 1 cut(s) 620
BisI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 207, 210
BlsI GCNGC 7 cut(s) 10, 19, 28, 178, 181, 208, 211
Bme1390I CCNGG 2 cut(s) 330, 461
Bme18I GGWCC 2 cut(s) 290, 533
BmgT120I GGNCC 3 cut(s) 290, 332, 533
BmiI GGNNCC 2 cut(s) 140, 344
BmrFI CCNGG 2 cut(s) 330, 461
BmsI GCATC 1 cut(s) 368
BpuEI CTTGAG 2 cut(s) 221, 596
BsaHI GRCGYC 2 cut(s) 126, 261
BsaJI CCNNGG 6 cut(s) 21, 121, 329, 460, 558, 586
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 530, 592
Bse1I ACTGG 4 cut(s) 18, 322, 535, 625
Bse21I CCTNAGG 1 cut(s) 432
Bse3DI GCAATG 1 cut(s) 631
BseBI CCWGG 2 cut(s) 330, 461
BseDI CCNNGG 6 cut(s) 21, 121, 329, 460, 558, 586
BseGI GGATG 4 cut(s) 56, 383, 442, 586
BseLI CCNNNNNNNGG 3 cut(s) 451, 530, 592
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 3 cut(s) 60, 148, 423
BseNI ACTGG 4 cut(s) 18, 322, 535, 625
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 3 cut(s) 20, 38, 221
BshFI GGCC 3 cut(s) 20, 224, 334
BsiHKAI GWGCWC 2 cut(s) 397, 430
BslI CCNNNNNNNGG 3 cut(s) 451, 530, 592
BsmAI GTCTC 2 cut(s) 133, 174
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 3 cut(s) 20, 224, 334
Bsp1286I GDGCHC 3 cut(s) 245, 397, 430
Bsp19I CCATGG 2 cut(s) 21, 121
BspACI CCGC 5 cut(s) 17, 177, 180, 207, 452
BspANI GGCC 3 cut(s) 20, 224, 334
BspCNI CTCAG 3 cut(s) 59, 147, 424
BspHI TCATGA 1 cut(s) 568
BspLI GGNNCC 2 cut(s) 140, 344
BspMI ACCTGC 1 cut(s) 620
BspQI GCTCTTC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 631
BsrI ACTGG 4 cut(s) 18, 322, 535, 625
BssECI CCNNGG 6 cut(s) 21, 121, 329, 460, 558, 586
BssNI GRCGYC 2 cut(s) 126, 261
BssT1I CCWWGG 4 cut(s) 21, 121, 558, 586
Bst2UI CCWGG 2 cut(s) 330, 461
Bst4CI ACNGT 4 cut(s) 199, 253, 290, 301
Bst6I CTCTTC 2 cut(s) 74, 547
BstACI GRCGYC 2 cut(s) 126, 261
BstC8I GCNNGC 2 cut(s) 6, 657
BstDEI CTNAG 5 cut(s) 46, 134, 432, 608, 614
BstDSI CCRYGG 2 cut(s) 21, 121
BstEII GGTNACC 1 cut(s) 455
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 4 cut(s) 56, 383, 442, 586
BstMAI GTCTC 2 cut(s) 133, 174
BstMWI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
BstNI CCWGG 2 cut(s) 330, 461
BstNSI RCATGY 1 cut(s) 648
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 328, 459
BstSLI GKGCMC 1 cut(s) 245
BstV1I GCAGC 3 cut(s) 20, 38, 221
Bsu36I CCTNAGG 1 cut(s) 432
BsuRI GGCC 3 cut(s) 20, 224, 334
BtgI CCRYGG 2 cut(s) 21, 121
BtsCI GGATG 4 cut(s) 56, 383, 442, 586
BtsIMutI CAGTG 2 cut(s) 11, 618
BveI ACCTGC 1 cut(s) 620
Cac8I GCNNGC 2 cut(s) 6, 657
CciI TCATGA 1 cut(s) 568
Cfr13I GGNCC 3 cut(s) 290, 332, 533
CseI GACGC 2 cut(s) 115, 250
CspCI CAANNNNNGTGG 4 cut(s) 489, 524, 613, 648
CviAII CATG 9 cut(s) 22, 122, 166, 353, 422, 449, 569, 602, 645
DdeI CTNAG 5 cut(s) 46, 134, 432, 608, 614
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 74, 547
EarI CTCTTC 2 cut(s) 74, 547
Ecl136II GAGCTC 1 cut(s) 428
Eco130I CCWWGG 4 cut(s) 21, 121, 558, 586
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 2 cut(s) 290, 533
Eco53kI GAGCTC 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 432
Eco91I GGTNACC 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 428
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 455
EcoRII CCWGG 2 cut(s) 328, 459
EcoT14I CCWWGG 4 cut(s) 21, 121, 558, 586
EcoT22I ATGCAT 1 cut(s) 383
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 4 cut(s) 21, 121, 558, 586
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 9 cut(s) 25, 125, 169, 356, 425, 452, 572, 605, 648
FatI CATG 9 cut(s) 21, 121, 165, 352, 421, 448, 568, 601, 644
FauI CCCGC 1 cut(s) 445
Fnu4HI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 207, 210
FokI GGATG 4 cut(s) 43, 390, 449, 593
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 207, 210
GluI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 207, 210
HaeIII GGCC 3 cut(s) 20, 224, 334
HgaI GACGC 2 cut(s) 115, 250
Hin1I GRCGYC 2 cut(s) 126, 261
Hin1II CATG 9 cut(s) 25, 125, 169, 356, 425, 452, 572, 605, 648
HinfI GANTC 2 cut(s) 103, 418
HphI GGTGA 3 cut(s) 187, 374, 467
Hpy166II GTNNAC 2 cut(s) 599, 635
Hpy188III TCNNGA 2 cut(s) 431, 569
Hpy8I GTNNAC 2 cut(s) 599, 635
Hpy99I CGWCG 5 cut(s) 203, 206, 230, 257, 266
HpyAV CCTTC 3 cut(s) 127, 214, 251
HpyCH4III ACNGT 4 cut(s) 199, 253, 290, 301
HpyCH4V TGCA 4 cut(s) 4, 352, 381, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
HpyF3I CTNAG 5 cut(s) 46, 134, 432, 608, 614
Hsp92I GRCGYC 2 cut(s) 126, 261
Hsp92II CATG 9 cut(s) 25, 125, 169, 356, 425, 452, 572, 605, 648
LguI GCTCTTC 1 cut(s) 547
LmnI GCTCC 4 cut(s) 144, 392, 425, 433
Lsp1109I GCAGC 3 cut(s) 20, 38, 221
LweI GCATC 1 cut(s) 368
MaeIII GTNAC 3 cut(s) 265, 362, 455
MboII GAAGA 2 cut(s) 61, 564
MhlI GDGCHC 3 cut(s) 245, 397, 430
MluCI AATT 3 cut(s) 78, 471, 546
MlyI GAGTC 2 cut(s) 97, 412
MnlI CCTC 6 cut(s) 124, 203, 345, 427, 490, 571
Mph1103I ATGCAT 1 cut(s) 383
MseI TTAA 1 cut(s) 527
MslI CAYNNNNRTG 2 cut(s) 351, 453
MspR9I CCNGG 2 cut(s) 330, 461
MvaI CCWGG 2 cut(s) 330, 461
MwoI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
NcoI CCATGG 2 cut(s) 21, 121
NlaIII CATG 9 cut(s) 25, 125, 169, 356, 425, 452, 572, 605, 648
NlaIV GGNNCC 2 cut(s) 140, 344
NmuCI GTSAC 2 cut(s) 362, 455
NsiI ATGCAT 1 cut(s) 383
NspI RCATGY 1 cut(s) 648
PagI TCATGA 1 cut(s) 568
PaqCI CACCTGC 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PflMI CCANNNNNTGG 1 cut(s) 530
PkrI GCNGC 7 cut(s) 10, 19, 28, 178, 181, 208, 211
PleI GAGTC 2 cut(s) 97, 412
PpsI GAGTC 2 cut(s) 97, 412
Psp124BI GAGCTC 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 328, 459
PspEI GGTNACC 1 cut(s) 455
PspGI CCWGG 2 cut(s) 328, 459
PspN4I GGNNCC 2 cut(s) 140, 344
PspPI GGNCC 3 cut(s) 290, 332, 533
RseI CAYNNNNRTG 2 cut(s) 351, 453
SacI GAGCTC 1 cut(s) 430
SapI GCTCTTC 1 cut(s) 547
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 7 cut(s) 9, 18, 27, 177, 180, 207, 210
Sau96I GGNCC 3 cut(s) 290, 332, 533
SchI GAGTC 2 cut(s) 97, 412
ScrFI CCNGG 2 cut(s) 330, 461
SduI GDGCHC 3 cut(s) 245, 397, 430
SetI ASST 6 cut(s) 272, 331, 430, 462, 588, 634
SfaNI GCATC 1 cut(s) 368
SinI GGWCC 2 cut(s) 290, 533
SmiMI CAYNNNNRTG 2 cut(s) 351, 453
SmlI CTYRAG 2 cut(s) 236, 575
SmoI CTYRAG 2 cut(s) 236, 575
Sse9I AATT 3 cut(s) 78, 471, 546
SsiI CCGC 5 cut(s) 17, 177, 180, 207, 452
SstI GAGCTC 1 cut(s) 430
StyD4I CCNGG 2 cut(s) 328, 459
StyI CCWWGG 4 cut(s) 21, 121, 558, 586
TaaI ACNGT 4 cut(s) 199, 253, 290, 301
TaqI TCGA 1 cut(s) 255
TasI AATT 3 cut(s) 78, 471, 546
TauI GCSGC 4 cut(s) 20, 179, 182, 209
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TscAI CASTG 2 cut(s) 18, 625
TseFI GTSAC 2 cut(s) 362, 455
TseI GCWGC 3 cut(s) 8, 26, 209
Tsp45I GTSAC 2 cut(s) 362, 455
TspDTI ATGAA 4 cut(s) 453, 557, 585, 618
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 2 cut(s) 18, 625
Van91I CCANNNNNTGG 1 cut(s) 530
VpaK11BI GGWCC 2 cut(s) 290, 533
XagI CCTNNNNNAGG 1 cut(s) 590
XceI RCATGY 1 cut(s) 648
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.