RLG00000035122

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011700
Physical Location & Seq
Reverse (-)
61250228 .. 61260199
9972 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035122

Sequence Viewer

Length: 951 bp
ATGCAAGCAGCACTGGCGGCCATGGCAGCCCACTCTGTGATACTCTCAGCCTACTCATTCCCCACTCTCTTCGCCCCAATTCAAACCCCTAACCCCCACCCAACTCTCCACTCCTCCTTCCATGGCGTCTCTCTCAAGCTCCCCATCAAATCCCAATCCATGTCTCTCGCCTCCCCCAAGCCCCTCACCGTCGTCGCCGCCACCAAGAAGGCCGTCGCCGTTCTCAAGGGCACTTCAACCGTCGAAGGCGTCGCCACCTTGACGCAAGAAGATGACGGTCCTACAACTGTGAATGTTCGTATTACTGGACTTACACCTGGGCCTCATGGGTTCCACTTGCATGAGTTTGGTGACACGACAAATGGATGCATTTCCACAGGAGCACATTTCAATCCTAAAAACTTGACTCATGGAGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAATTGCTAATGCCGACGGAGTGGCAGAGGCAACAATCGTGGATAGCCAGATACCATTAACTGGTCCTAATGCTGTAATTGGAAGAGCCTTGGTGGTTCATGAACTTGAGGATGACCTTGGAAAGGGTGGACATGAACTTAGTCTAAGCACTGGCAATGCAGGTGGACGATTGGCATGTGGTGTGGAAGACGATTACTCTATTGACGGCCTCGAGGAGTCCATCGATGGCCTTGAACACGATGACTCTGATACTCCCTGGATTCCCCCTAAGGGCACCACAACTAAGGTGATTACTAAAGGATCTCTTTTGGCTGCACAGGAGGATTTGCGTATAGTGATGGACTTGCTATTTCTGAGGGAGCACCATGCCGGAACTTTACTCATACATCACCAGTGGGATGTTGAGAAGGTTTTTGTAGTGCTTGTAGAGAAGGGAAGAGCTTTCTTGTTTGTAGAAGCAGGTGTATCTGTAGTTGAACGCACATCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

317

Amino Acids

33.36

Weight (kDa)

5.41

Isoelectric Point (pI)

21.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 81 - 214 2.4e-48 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 608, 908
AbsI CCTCGAGG 1 cut(s) 668
Acc36I ACCTGC 2 cut(s) 608, 908
AccB1I GGYRCC 1 cut(s) 731
AccB7I CCANNNNNTGG 1 cut(s) 518
AciI CCGC 3 cut(s) 17, 198, 440
AclWI GGATC 1 cut(s) 766
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 2 cut(s) 126, 249
AdeI CACNNNGTG 1 cut(s) 37
AfiI CCNNNNNNNGG 4 cut(s) 439, 518, 580, 728
AgsI TTSAA 5 cut(s) 83, 237, 391, 692, 935
AjnI CCWGG 3 cut(s) 316, 447, 713
AluBI AGCT 3 cut(s) 139, 416, 899
AluI AGCT 3 cut(s) 139, 416, 899
Alw21I GWGCWC 3 cut(s) 385, 418, 822
Alw26I GTCTC 2 cut(s) 133, 168
AlwI GGATC 1 cut(s) 766
Ama87I CYCGRG 1 cut(s) 668
AoxI GGCC 5 cut(s) 18, 210, 320, 664, 685
ApeKI GCWGC 3 cut(s) 8, 26, 770
AspS9I GGNCC 3 cut(s) 278, 320, 521
AsuHPI GGTGA 5 cut(s) 178, 362, 455, 757, 839
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 2 cut(s) 278, 521
AxyI CCTNAGG 2 cut(s) 420, 726
BaeGI GKGCMC 2 cut(s) 233, 734
BanI GGYRCC 1 cut(s) 731
BanII GRGCYC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 3 cut(s) 385, 418, 822
BbvI GCAGC 3 cut(s) 20, 38, 757
BccI CCATC 4 cut(s) 152, 677, 686, 790
BceAI ACGGC 3 cut(s) 197, 203, 679
BciT130I CCWGG 3 cut(s) 318, 449, 715
BcoDI GTCTC 2 cut(s) 133, 168
BfmI CTRYAG 1 cut(s) 927
BfuAI ACCTGC 2 cut(s) 608, 908
BisI GCNGC 5 cut(s) 9, 18, 27, 198, 771
BlsI GCNGC 5 cut(s) 10, 19, 28, 199, 772
Bme1390I CCNGG 3 cut(s) 318, 449, 715
Bme18I GGWCC 2 cut(s) 278, 521
BmeT110I CYCGRG 1 cut(s) 668
BmgT120I GGNCC 3 cut(s) 278, 320, 521
BmiI GGNNCC 2 cut(s) 332, 733
BmrFI CCNGG 3 cut(s) 318, 449, 715
BmsI GCATC 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 651
BpuEI CTTGAG 3 cut(s) 119, 209, 584
Bsa29I ATCGAT 1 cut(s) 681
BsaHI GRCGYC 2 cut(s) 126, 249
BsaJI CCNNGG 7 cut(s) 21, 121, 317, 448, 546, 574, 713
Bsc4I CCNNNNNNNGG 4 cut(s) 439, 518, 580, 728
Bse1I ACTGG 5 cut(s) 18, 310, 523, 613, 850
Bse21I CCTNAGG 2 cut(s) 420, 726
Bse3DI GCAATG 1 cut(s) 619
BseBI CCWGG 3 cut(s) 318, 449, 715
BseCI ATCGAT 1 cut(s) 681
BseDI CCNNGG 7 cut(s) 21, 121, 317, 448, 546, 574, 713
BseGI GGATG 4 cut(s) 371, 430, 574, 862
BseLI CCNNNNNNNGG 4 cut(s) 439, 518, 580, 728
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 3 cut(s) 60, 411, 803
BseNI ACTGG 5 cut(s) 18, 310, 523, 613, 850
BseRI GAGGAG 2 cut(s) 103, 686
BseSI GKGCMC 2 cut(s) 233, 734
BseXI GCAGC 3 cut(s) 20, 38, 757
BsgI GTGCAG 1 cut(s) 756
BshFI GGCC 5 cut(s) 20, 212, 322, 666, 687
BshNI GGYRCC 1 cut(s) 731
BshVI ATCGAT 1 cut(s) 681
BsiHKAI GWGCWC 3 cut(s) 385, 418, 822
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 1 cut(s) 828
BslI CCNNNNNNNGG 4 cut(s) 439, 518, 580, 728
BsmAI GTCTC 2 cut(s) 133, 168
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 5 cut(s) 20, 212, 322, 666, 687
BsoBI CYCGRG 1 cut(s) 668
Bsp1286I GDGCHC 5 cut(s) 233, 385, 418, 734, 822
Bsp143I GATC 1 cut(s) 758
Bsp19I CCATGG 2 cut(s) 21, 121
BspACI CCGC 3 cut(s) 17, 198, 440
BspANI GGCC 5 cut(s) 20, 212, 322, 666, 687
BspCNI CTCAG 3 cut(s) 59, 412, 804
BspDI ATCGAT 1 cut(s) 681
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 2 cut(s) 332, 733
BspMI ACCTGC 2 cut(s) 608, 908
BspPI GGATC 1 cut(s) 766
BspQI GCTCTTC 2 cut(s) 535, 889
BspT107I GGYRCC 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 619
BsrI ACTGG 5 cut(s) 18, 310, 523, 613, 850
BssECI CCNNGG 7 cut(s) 21, 121, 317, 448, 546, 574, 713
BssMI GATC 1 cut(s) 758
BssNI GRCGYC 2 cut(s) 126, 249
BssT1I CCWWGG 4 cut(s) 21, 121, 546, 574
Bst2UI CCWGG 3 cut(s) 318, 449, 715
Bst4CI ACNGT 4 cut(s) 190, 241, 278, 289
Bst6I CTCTTC 3 cut(s) 74, 535, 889
BstACI GRCGYC 2 cut(s) 126, 249
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 7 cut(s) 46, 420, 596, 602, 726, 741, 812
BstDSI CCRYGG 2 cut(s) 21, 121
BstEII GGTNACC 1 cut(s) 443
BstENI CCTNNNNNAGG 1 cut(s) 578
BstF5I GGATG 4 cut(s) 371, 430, 574, 862
BstKTI GATC 1 cut(s) 761
BstMAI GTCTC 2 cut(s) 133, 168
BstMBI GATC 1 cut(s) 758
BstMWI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
BstNI CCWGG 3 cut(s) 318, 449, 715
BstNSI RCATGY 1 cut(s) 636
BstPI GGTNACC 1 cut(s) 443
BstSCI CCNGG 3 cut(s) 316, 447, 713
BstSFI CTRYAG 1 cut(s) 927
BstSLI GKGCMC 2 cut(s) 233, 734
BstV1I GCAGC 3 cut(s) 20, 38, 757
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 758
BstYI RGATCY 1 cut(s) 758
Bsu15I ATCGAT 1 cut(s) 681
Bsu36I CCTNAGG 2 cut(s) 420, 726
BsuRI GGCC 5 cut(s) 20, 212, 322, 666, 687
BsuTUI ATCGAT 1 cut(s) 681
BtgI CCRYGG 2 cut(s) 21, 121
BtsCI GGATG 4 cut(s) 371, 430, 574, 862
BtsIMutI CAGTG 3 cut(s) 11, 606, 857
BveI ACCTGC 2 cut(s) 608, 908
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 556
Cfr13I GGNCC 3 cut(s) 278, 320, 521
ClaI ATCGAT 1 cut(s) 681
CseI GACGC 3 cut(s) 115, 238, 271
CspCI CAANNNNNGTGG 4 cut(s) 477, 512, 601, 636
DdeI CTNAG 7 cut(s) 46, 420, 596, 602, 726, 741, 812
DpnI GATC 1 cut(s) 760
DpnII GATC 1 cut(s) 758
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 3 cut(s) 74, 535, 889
EarI CTCTTC 3 cut(s) 74, 535, 889
Ecl136II GAGCTC 1 cut(s) 416
Eco130I CCWWGG 4 cut(s) 21, 121, 546, 574
Eco24I GRGCYC 1 cut(s) 418
Eco47I GGWCC 2 cut(s) 278, 521
Eco53kI GAGCTC 1 cut(s) 416
Eco81I CCTNAGG 2 cut(s) 420, 726
Eco88I CYCGRG 1 cut(s) 668
Eco91I GGTNACC 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 416
EcoNI CCTNNNNNAGG 1 cut(s) 578
EcoO65I GGTNACC 1 cut(s) 443
EcoRII CCWGG 3 cut(s) 316, 447, 713
EcoT14I CCWWGG 4 cut(s) 21, 121, 546, 574
EcoT22I ATGCAT 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 4 cut(s) 21, 121, 546, 574
Esp3I CGTCTC 1 cut(s) 133
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FauI CCCGC 1 cut(s) 433
Fnu4HI GCNGC 5 cut(s) 9, 18, 27, 198, 771
FokI GGATG 4 cut(s) 378, 437, 581, 869
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 5 cut(s) 9, 18, 27, 198, 771
GluI GCNGC 5 cut(s) 9, 18, 27, 198, 771
HaeIII GGCC 5 cut(s) 20, 212, 322, 666, 687
HapII CCGG 1 cut(s) 828
HgaI GACGC 3 cut(s) 115, 238, 271
Hin1I GRCGYC 2 cut(s) 126, 249
HinfI GANTC 4 cut(s) 406, 674, 701, 718
HpaII CCGG 1 cut(s) 828
HphI GGTGA 5 cut(s) 178, 362, 455, 757, 839
Hpy166II GTNNAC 2 cut(s) 587, 623
Hpy188I TCNGA 2 cut(s) 706, 813
Hpy188III TCNNGA 3 cut(s) 419, 557, 945
Hpy8I GTNNAC 2 cut(s) 587, 623
Hpy99I CGWCG 6 cut(s) 194, 197, 218, 245, 254, 476
HpyAV CCTTC 5 cut(s) 127, 202, 239, 859, 883
HpyCH4III ACNGT 4 cut(s) 190, 241, 278, 289
HpyCH4V TGCA 5 cut(s) 4, 340, 369, 617, 773
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
HpyF3I CTNAG 7 cut(s) 46, 420, 596, 602, 726, 741, 812
Hsp92I GRCGYC 2 cut(s) 126, 249
Kzo9I GATC 1 cut(s) 758
LguI GCTCTTC 2 cut(s) 535, 889
LmnI GCTCC 5 cut(s) 144, 380, 413, 421, 817
Lsp1109I GCAGC 3 cut(s) 20, 38, 757
LweI GCATC 1 cut(s) 356
MaeIII GTNAC 2 cut(s) 350, 443
MalI GATC 1 cut(s) 760
MboI GATC 1 cut(s) 758
MboII GAAGA 5 cut(s) 61, 281, 552, 656, 906
MflI RGATCY 1 cut(s) 758
MhlI GDGCHC 5 cut(s) 233, 385, 418, 734, 822
MluCI AATT 3 cut(s) 78, 459, 534
MlyI GAGTC 3 cut(s) 400, 683, 695
Mph1103I ATGCAT 1 cut(s) 371
MseI TTAA 1 cut(s) 515
MslI CAYNNNNRTG 2 cut(s) 339, 441
MspI CCGG 1 cut(s) 828
MspR9I CCNGG 3 cut(s) 318, 449, 715
MvaI CCWGG 3 cut(s) 318, 449, 715
MwoI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
NcoI CCATGG 2 cut(s) 21, 121
NdeII GATC 1 cut(s) 758
NlaIV GGNNCC 2 cut(s) 332, 733
NmuCI GTSAC 2 cut(s) 350, 443
NsiI ATGCAT 1 cut(s) 371
NspI RCATGY 1 cut(s) 636
PaeR7I CTCGAG 1 cut(s) 668
PagI TCATGA 1 cut(s) 556
PaqCI CACCTGC 2 cut(s) 608, 908
PciSI GCTCTTC 2 cut(s) 535, 889
PfeI GAWTC 1 cut(s) 718
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 5 cut(s) 10, 19, 28, 199, 772
PleI GAGTC 3 cut(s) 400, 682, 695
PpsI GAGTC 3 cut(s) 400, 682, 695
Psp124BI GAGCTC 1 cut(s) 418
Psp6I CCWGG 3 cut(s) 316, 447, 713
PspEI GGTNACC 1 cut(s) 443
PspGI CCWGG 3 cut(s) 316, 447, 713
PspN4I GGNNCC 2 cut(s) 332, 733
PspPI GGNCC 3 cut(s) 278, 320, 521
PspXI VCTCGAGB 1 cut(s) 668
PsuI RGATCY 1 cut(s) 758
RseI CAYNNNNRTG 2 cut(s) 339, 441
SacI GAGCTC 1 cut(s) 418
SapI GCTCTTC 2 cut(s) 535, 889
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 5 cut(s) 9, 18, 27, 198, 771
Sau3AI GATC 1 cut(s) 758
Sau96I GGNCC 3 cut(s) 278, 320, 521
SchI GAGTC 3 cut(s) 400, 683, 695
ScrFI CCNGG 3 cut(s) 318, 449, 715
SduI GDGCHC 5 cut(s) 233, 385, 418, 734, 822
SfaNI GCATC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 927
Sfr274I CTCGAG 1 cut(s) 668
SinI GGWCC 2 cut(s) 278, 521
SlaI CTCGAG 1 cut(s) 668
SmiMI CAYNNNNRTG 2 cut(s) 339, 441
SmlI CTYRAG 4 cut(s) 134, 224, 563, 668
SmoI CTYRAG 4 cut(s) 134, 224, 563, 668
Sse9I AATT 3 cut(s) 78, 459, 534
SsiI CCGC 3 cut(s) 17, 198, 440
SstI GAGCTC 1 cut(s) 418
StyD4I CCNGG 3 cut(s) 316, 447, 713
StyI CCWWGG 4 cut(s) 21, 121, 546, 574
TaaI ACNGT 4 cut(s) 190, 241, 278, 289
TaqI TCGA 3 cut(s) 243, 669, 681
TasI AATT 3 cut(s) 78, 459, 534
TauI GCSGC 2 cut(s) 20, 200
TfiI GAWTC 1 cut(s) 718
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TscAI CASTG 3 cut(s) 18, 613, 857
TseFI GTSAC 2 cut(s) 350, 443
TseI GCWGC 3 cut(s) 8, 26, 770
Tsp45I GTSAC 2 cut(s) 350, 443
TspDTI ATGAA 4 cut(s) 441, 545, 573, 606
TspGWI ACGGA 2 cut(s) 422, 489
TspRI CASTG 3 cut(s) 18, 613, 857
Van91I CCANNNNNTGG 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 278, 521
XagI CCTNNNNNAGG 1 cut(s) 578
XceI RCATGY 1 cut(s) 636
XhoI CTCGAG 1 cut(s) 668
Zsp2I ATGCAT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.