Prupe.6G112800_v2.0.a1

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011700
Physical Location & Seq
Forward (+)
8138077 .. 8142339
4263 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G112800.1

Sequence Viewer

Length: 672 bp
ATGCAAGCAGCCTTGGCAGCCATGGCAGCCCACACTTTGATGCTCTCAACCTACTCATCTCCCACTCTCTTCTCCCAAATTCAAAGCCCTAACTCTCACCCACTTCCTCACTCCTCCTTCCATGGCCTCTCTGTTAAGCTCCCACTCAAATCCCAATTCCAATCCATGTCTCTCGCCGCAGCCCATAAGCCTCTCACTGTGGTTGCTGCCACCAAGAAAGCCGTCGCTGTCCTCAAGGGCAATTCCAGTGTCGAAGGGGTCGTCACCTTAAGCCAAGAAGACGATGGGCCTACAACTGTGAATGTTCGTATTACAGGACTTACTCCTGGGCCTCATGGGTTCCACTTACATGAGTACGGTGACACAACAAATGGATGCATATCCACAGGACCACATTTCAATCCTAAAAATTTGACACATGGTGCTCCTGAGGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCCGATGGGGTGGCAGAGGCAACAATCGTGGATAATCAGATTCCATTAACTGGTCCTAATGCTGTAATTGGAAGAGCACTTGTCGTTCATGAGCTTGTGGATGACCTTGGAAAGGGTGGACACGAGCTTAGTCTAAGCACTGGCAATGCAGGTGGAAGATTGGCATGTGGTGTGGTTGGTTTGACACCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

224

Amino Acids

22.92

Weight (kDa)

6.19

Isoelectric Point (pI)

24.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 617
Acc36I ACCTGC 1 cut(s) 617
AccB7I CCANNNNNTGG 1 cut(s) 527
AciI CCGC 2 cut(s) 177, 449
AcsI RAATTY 2 cut(s) 78, 409
AdeI CACNNNGTG 1 cut(s) 422
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 3 cut(s) 448, 527, 589
AflII CTTAAG 1 cut(s) 268
AgsI TTSAA 2 cut(s) 83, 400
AjnI CCWGG 2 cut(s) 325, 456
AluBI AGCT 3 cut(s) 139, 571, 604
AluI AGCT 3 cut(s) 139, 571, 604
Alw21I GWGCWC 2 cut(s) 427, 556
Alw26I GTCTC 1 cut(s) 174
AoxI GGCC 3 cut(s) 124, 287, 329
ApeKI GCWGC 5 cut(s) 8, 17, 26, 179, 206
ApoI RAATTY 2 cut(s) 78, 409
ArsI GACNNNNNNTTYG 2 cut(s) 246, 278
AspS9I GGNCC 4 cut(s) 287, 329, 389, 530
AsuHPI GGTGA 4 cut(s) 89, 256, 371, 464
AvaII GGWCC 2 cut(s) 389, 530
AxyI CCTNAGG 1 cut(s) 429
BauI CACGAG 1 cut(s) 599
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 2 cut(s) 427, 556
BbvI GCAGC 5 cut(s) 20, 29, 38, 191, 193
BccI CCATC 2 cut(s) 278, 476
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 2 cut(s) 327, 458
BcoDI GTCTC 1 cut(s) 174
BfrI CTTAAG 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 617
BisI GCNGC 6 cut(s) 9, 18, 27, 177, 180, 207
BlsI GCNGC 6 cut(s) 10, 19, 28, 178, 181, 208
Bme1390I CCNGG 2 cut(s) 327, 458
Bme18I GGWCC 2 cut(s) 389, 530
BmgT120I GGNCC 4 cut(s) 287, 329, 389, 530
BmiI GGNNCC 1 cut(s) 341
BmrFI CCNGG 2 cut(s) 327, 458
BmsI GCATC 2 cut(s) 30, 365
BpiI GAAGAC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 379
BsaJI CCNNGG 6 cut(s) 12, 21, 121, 326, 457, 583
Bsc4I CCNNNNNNNGG 3 cut(s) 448, 527, 589
Bse1I ACTGG 4 cut(s) 246, 532, 622, 665
Bse21I CCTNAGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 628
Bse8I GATNNNNATC 1 cut(s) 379
BseBI CCWGG 2 cut(s) 327, 458
BseDI CCNNGG 6 cut(s) 12, 21, 121, 326, 457, 583
BseGI GGATG 3 cut(s) 380, 439, 583
BseJI GATNNNNATC 1 cut(s) 379
BseLI CCNNNNNNNGG 3 cut(s) 448, 527, 589
BseMI GCAATG 1 cut(s) 628
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 4 cut(s) 246, 532, 622, 665
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 5 cut(s) 20, 29, 38, 191, 193
BshFI GGCC 3 cut(s) 126, 289, 331
BsiHKAI GWGCWC 2 cut(s) 427, 556
BslI CCNNNNNNNGG 3 cut(s) 448, 527, 589
BsmAI GTCTC 1 cut(s) 174
BsnI GGCC 3 cut(s) 126, 289, 331
Bsp1286I GDGCHC 2 cut(s) 427, 556
Bsp19I CCATGG 2 cut(s) 21, 121
BspACI CCGC 2 cut(s) 177, 449
BspANI GGCC 3 cut(s) 126, 289, 331
BspCNI CTCAG 1 cut(s) 421
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 1 cut(s) 341
BspMI ACCTGC 1 cut(s) 617
BspQI GCTCTTC 1 cut(s) 544
BspTI CTTAAG 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 628
BsrI ACTGG 4 cut(s) 246, 532, 622, 665
BssECI CCNNGG 6 cut(s) 12, 21, 121, 326, 457, 583
BssSI CACGAG 1 cut(s) 599
BssT1I CCWWGG 4 cut(s) 12, 21, 121, 583
Bst2BI CACGAG 1 cut(s) 599
Bst2UI CCWGG 2 cut(s) 327, 458
Bst4CI ACNGT 3 cut(s) 199, 298, 359
Bst6I CTCTTC 2 cut(s) 74, 544
BstAFI CTTAAG 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 429, 605, 611
BstDSI CCRYGG 2 cut(s) 21, 121
BstEII GGTNACC 1 cut(s) 452
BstENI CCTNNNNNAGG 1 cut(s) 587
BstF5I GGATG 3 cut(s) 380, 439, 583
BstMAI GTCTC 1 cut(s) 174
BstMWI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
BstNI CCWGG 2 cut(s) 327, 458
BstNSI RCATGY 1 cut(s) 645
BstPI GGTNACC 1 cut(s) 452
BstSCI CCNGG 2 cut(s) 325, 456
BstV1I GCAGC 5 cut(s) 20, 29, 38, 191, 193
BstV2I GAAGAC 1 cut(s) 285
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 3 cut(s) 126, 289, 331
BtgI CCRYGG 2 cut(s) 21, 121
BtsCI GGATG 3 cut(s) 380, 439, 583
BtsIMutI CAGTG 4 cut(s) 195, 253, 615, 672
BveI ACCTGC 1 cut(s) 617
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 565
Cfr13I GGNCC 4 cut(s) 287, 329, 389, 530
Csp6I GTAC 1 cut(s) 355
CspCI CAANNNNNGTGG 4 cut(s) 486, 521, 610, 645
CviAII CATG 9 cut(s) 22, 122, 166, 335, 350, 419, 446, 566, 642
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 3 cut(s) 429, 605, 611
DraIII CACNNNGTG 1 cut(s) 422
Eam1104I CTCTTC 2 cut(s) 74, 544
EarI CTCTTC 2 cut(s) 74, 544
Eco130I CCWWGG 4 cut(s) 12, 21, 121, 583
Eco47I GGWCC 2 cut(s) 389, 530
Eco81I CCTNAGG 1 cut(s) 429
Eco91I GGTNACC 1 cut(s) 452
EcoNI CCTNNNNNAGG 1 cut(s) 587
EcoO65I GGTNACC 1 cut(s) 452
EcoRII CCWGG 2 cut(s) 325, 456
EcoT14I CCWWGG 4 cut(s) 12, 21, 121, 583
EcoT22I ATGCAT 1 cut(s) 380
ErhI CCWWGG 4 cut(s) 12, 21, 121, 583
FaeI CATG 9 cut(s) 25, 125, 169, 338, 353, 422, 449, 569, 645
FatI CATG 9 cut(s) 21, 121, 165, 334, 349, 418, 445, 565, 641
FauI CCCGC 1 cut(s) 442
Fnu4HI GCNGC 6 cut(s) 9, 18, 27, 177, 180, 207
FokI GGATG 3 cut(s) 387, 446, 590
Fsp4HI GCNGC 6 cut(s) 9, 18, 27, 177, 180, 207
GluI GCNGC 6 cut(s) 9, 18, 27, 177, 180, 207
HaeIII GGCC 3 cut(s) 126, 289, 331
Hin1II CATG 9 cut(s) 25, 125, 169, 338, 353, 422, 449, 569, 645
HinfI GANTC 1 cut(s) 517
HphI GGTGA 4 cut(s) 89, 256, 371, 464
Hpy166II GTNNAC 1 cut(s) 596
Hpy188I TCNGA 1 cut(s) 516
Hpy188III TCNNGA 2 cut(s) 428, 566
Hpy8I GTNNAC 1 cut(s) 596
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 127, 248
HpyCH4III ACNGT 3 cut(s) 199, 298, 359
HpyCH4V TGCA 3 cut(s) 4, 378, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
HpyF3I CTNAG 3 cut(s) 429, 605, 611
Hsp92II CATG 9 cut(s) 25, 125, 169, 338, 353, 422, 449, 569, 645
LguI GCTCTTC 1 cut(s) 544
LmnI GCTCC 2 cut(s) 144, 430
Lsp1109I GCAGC 5 cut(s) 20, 29, 38, 191, 193
LweI GCATC 2 cut(s) 30, 365
MaeIII GTNAC 3 cut(s) 262, 359, 452
MboII GAAGA 4 cut(s) 61, 290, 561, 645
MhlI GDGCHC 2 cut(s) 427, 556
MluCI AATT 5 cut(s) 78, 155, 241, 409, 543
MnlI CCTC 8 cut(s) 117, 124, 137, 201, 242, 342, 424, 487
Mph1103I ATGCAT 1 cut(s) 380
MseI TTAA 3 cut(s) 135, 269, 524
MslI CAYNNNNRTG 3 cut(s) 38, 348, 450
MspCI CTTAAG 1 cut(s) 268
MspR9I CCNGG 2 cut(s) 327, 458
MvaI CCWGG 2 cut(s) 327, 458
MwoI GCNNNNNNNGC 4 cut(s) 14, 17, 23, 26
NcoI CCATGG 2 cut(s) 21, 121
NlaIII CATG 9 cut(s) 25, 125, 169, 338, 353, 422, 449, 569, 645
NlaIV GGNNCC 1 cut(s) 341
NmuCI GTSAC 3 cut(s) 262, 359, 452
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 1 cut(s) 645
PagI TCATGA 1 cut(s) 565
PaqCI CACCTGC 1 cut(s) 617
PciSI GCTCTTC 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 527
PkrI GCNGC 6 cut(s) 10, 19, 28, 178, 181, 208
Psp6I CCWGG 2 cut(s) 325, 456
PspEI GGTNACC 1 cut(s) 452
PspGI CCWGG 2 cut(s) 325, 456
PspN4I GGNNCC 1 cut(s) 341
PspPI GGNCC 4 cut(s) 287, 329, 389, 530
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 3 cut(s) 38, 348, 450
SapI GCTCTTC 1 cut(s) 544
SaqAI TTAA 3 cut(s) 135, 269, 524
SatI GCNGC 6 cut(s) 9, 18, 27, 177, 180, 207
Sau96I GGNCC 4 cut(s) 287, 329, 389, 530
ScrFI CCNGG 2 cut(s) 327, 458
SduI GDGCHC 2 cut(s) 427, 556
SetI ASST 8 cut(s) 53, 141, 269, 459, 573, 585, 606, 631
SfaNI GCATC 2 cut(s) 30, 365
SinI GGWCC 2 cut(s) 389, 530
SmiMI CAYNNNNRTG 3 cut(s) 38, 348, 450
SmlI CTYRAG 2 cut(s) 233, 268
SmoI CTYRAG 2 cut(s) 233, 268
Sse9I AATT 5 cut(s) 78, 155, 241, 409, 543
SsiI CCGC 2 cut(s) 177, 449
StyD4I CCNGG 2 cut(s) 325, 456
StyI CCWWGG 4 cut(s) 12, 21, 121, 583
TaaI ACNGT 3 cut(s) 199, 298, 359
TaqI TCGA 1 cut(s) 252
TasI AATT 5 cut(s) 78, 155, 241, 409, 543
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 3 cut(s) 135, 269, 524
Tru9I TTAA 3 cut(s) 135, 269, 524
TscAI CASTG 4 cut(s) 202, 253, 622, 672
TseFI GTSAC 3 cut(s) 262, 359, 452
TseI GCWGC 5 cut(s) 8, 17, 26, 179, 206
Tsp45I GTSAC 3 cut(s) 262, 359, 452
TspDTI ATGAA 2 cut(s) 450, 554
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 4 cut(s) 202, 253, 622, 672
Van91I CCANNNNNTGG 1 cut(s) 527
Vha464I CTTAAG 1 cut(s) 268
VpaK11BI GGWCC 2 cut(s) 389, 530
XagI CCTNNNNNAGG 1 cut(s) 587
XapI RAATTY 2 cut(s) 78, 409
XceI RCATGY 1 cut(s) 645
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.