MD03G1128900.v1.1

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011700
Physical Location & Seq
Reverse (-)
12520733 .. 12524775
4043 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1128900.v1.1.491

Sequence Viewer

Length: 654 bp
ATGCAAACAGCTTCGGCGGTCATGGCAGCTCAGACTGTGATTGCTTCATCCCCCACTCTCTTCTCCCAGCTTAAATACCCTAACCCTCGCTCAATTACTCATTCCTCCTTCCATGGCGTCTCCCTCAAGCTCGCACTCAAATCCCAATCCATGTCTTTCGCCGCCCCTAAGCCCCTCACCGTCATCGCCGCCACCAAGAAAGCCGTCGCTGTCCTCAAGGGCACTTCCAGTGTTGAAGGAGTCGTTACCTTGAGCCAAGAAGACGATGGTCCTACAACCGTTAATGTTCGTATTACTGGACTTACTCCTGGGCCTCATGGGTTCCACTTACATGAGTATGGTGATACGACAAATGGATGCATATCCACAGGAGCACATTTCAATCCTAAACAGTTGACACATGGTGCTCCTGAGGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAATTGCCAATGCCGATGGGGTGGCAGAGGCAACAATCGTGGATAACCAGATACCATTAACTGGTCCTAATGCTATAATTGGAAGAGCACTTGTCGTTCATGAGCTTGAGGATGATCTTGGAAAGGGTGGACACGAACTCAGTCTAAGCACTGGCAATGCAGGTGGAAGATTGGCATGTGGTGTGGTAGGTTTGACACCGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

218

Amino Acids

22.28

Weight (kDa)

6.17

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 78 - 212 6.6e-49 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 599
AccB7I CCANNNNNTGG 1 cut(s) 509
AciI CCGC 4 cut(s) 17, 162, 189, 431
AcyI GRCGYC 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 430, 509
AgeI ACCGGT 1 cut(s) 646
AgsI TTSAA 2 cut(s) 236, 382
AjnI CCWGG 2 cut(s) 307, 438
AluBI AGCT 5 cut(s) 11, 29, 70, 130, 553
AluI AGCT 5 cut(s) 11, 29, 70, 130, 553
Alw21I GWGCWC 3 cut(s) 376, 409, 538
Alw26I GTCTC 1 cut(s) 124
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 26
AsiGI ACCGGT 1 cut(s) 646
AspS9I GGNCC 3 cut(s) 269, 311, 512
AsuHPI GGTGA 3 cut(s) 169, 353, 446
AvaII GGWCC 2 cut(s) 269, 512
AxyI CCTNAGG 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 3 cut(s) 376, 409, 538
BbvI GCAGC 1 cut(s) 38
BccI CCATC 2 cut(s) 260, 458
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 2 cut(s) 309, 440
BcoDI GTCTC 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 599
BisI GCNGC 3 cut(s) 27, 162, 189
BlsI GCNGC 3 cut(s) 28, 163, 190
Bme1390I CCNGG 2 cut(s) 309, 440
Bme18I GGWCC 2 cut(s) 269, 512
BmgT120I GGNCC 3 cut(s) 269, 311, 512
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 2 cut(s) 309, 440
BmsI GCATC 1 cut(s) 347
BoxI GACNNNNGTC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 4 cut(s) 110, 200, 271, 575
BsaBI GATNNNNATC 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 112, 308, 439
BsaWI WCCGGW 1 cut(s) 646
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 509
Bse118I RCCGGY 1 cut(s) 646
Bse1I ACTGG 4 cut(s) 228, 301, 514, 604
Bse21I CCTNAGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 610
Bse8I GATNNNNATC 1 cut(s) 361
BseBI CCWGG 2 cut(s) 309, 440
BseDI CCNNGG 3 cut(s) 112, 308, 439
BseGI GGATG 4 cut(s) 47, 362, 421, 565
BseJI GATNNNNATC 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 430, 509
BseMI GCAATG 1 cut(s) 610
BseMII CTCAG 3 cut(s) 44, 402, 601
BseNI ACTGG 4 cut(s) 228, 301, 514, 604
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 66
BshFI GGCC 1 cut(s) 313
BshTI ACCGGT 1 cut(s) 646
BsiHKAI GWGCWC 3 cut(s) 376, 409, 538
BsiSI CCGG 1 cut(s) 647
BslI CCNNNNNNNGG 2 cut(s) 430, 509
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 1 cut(s) 313
Bsp1286I GDGCHC 4 cut(s) 224, 376, 409, 538
Bsp143I GATC 1 cut(s) 562
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 4 cut(s) 17, 162, 189, 431
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 3 cut(s) 43, 403, 600
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 323
BspMI ACCTGC 1 cut(s) 599
BspQI GCTCTTC 1 cut(s) 526
BsrDI GCAATG 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 646
BsrI ACTGG 4 cut(s) 228, 301, 514, 604
BssAI RCCGGY 1 cut(s) 646
BssECI CCNNGG 3 cut(s) 112, 308, 439
BssMI GATC 1 cut(s) 562
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 2 cut(s) 309, 440
Bst4CI ACNGT 4 cut(s) 37, 181, 280, 393
Bst6I CTCTTC 2 cut(s) 65, 526
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 5 cut(s) 30, 168, 411, 587, 593
BstDSI CCRYGG 1 cut(s) 112
BstEII GGTNACC 1 cut(s) 434
BstF5I GGATG 4 cut(s) 47, 362, 421, 565
BstKTI GATC 1 cut(s) 565
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 1 cut(s) 562
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 2 cut(s) 309, 440
BstNSI RCATGY 1 cut(s) 627
BstPAI GACNNNNGTC 1 cut(s) 267
BstPI GGTNACC 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 307, 438
BstSLI GKGCMC 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 1 cut(s) 313
BtgI CCRYGG 1 cut(s) 112
BtgZI GCGATG 1 cut(s) 169
BtsCI GGATG 4 cut(s) 47, 362, 421, 565
BtsIMutI CAGTG 2 cut(s) 235, 597
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 547
Cfr10I RCCGGY 1 cut(s) 646
Cfr13I GGNCC 3 cut(s) 269, 311, 512
CseI GACGC 1 cut(s) 106
CspAI ACCGGT 1 cut(s) 646
CspCI CAANNNNNGTGG 4 cut(s) 468, 503, 592, 627
CviAII CATG 9 cut(s) 22, 113, 151, 317, 332, 401, 428, 548, 624
CviJI RGCY 9 cut(s) 11, 29, 70, 130, 172, 203, 255, 313, 553
CviKI_1 RGCY 9 cut(s) 11, 29, 70, 130, 172, 203, 255, 313, 553
DdeI CTNAG 5 cut(s) 30, 168, 411, 587, 593
DpnI GATC 1 cut(s) 564
DpnII GATC 1 cut(s) 562
DraIII CACNNNGTG 1 cut(s) 404
Eam1104I CTCTTC 2 cut(s) 65, 526
EarI CTCTTC 2 cut(s) 65, 526
Eco130I CCWWGG 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 269, 512
Eco81I CCTNAGG 1 cut(s) 411
Eco91I GGTNACC 1 cut(s) 434
EcoO65I GGTNACC 1 cut(s) 434
EcoRII CCWGG 2 cut(s) 307, 438
EcoT14I CCWWGG 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 9 cut(s) 25, 116, 154, 320, 335, 404, 431, 551, 627
FatI CATG 9 cut(s) 21, 112, 150, 316, 331, 400, 427, 547, 623
FauI CCCGC 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 27, 162, 189
FokI GGATG 4 cut(s) 34, 369, 428, 572
Fsp4HI GCNGC 3 cut(s) 27, 162, 189
GluI GCNGC 3 cut(s) 27, 162, 189
GsaI CCCAGC 1 cut(s) 70
HaeIII GGCC 1 cut(s) 313
HapII CCGG 1 cut(s) 647
HgaI GACGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 9 cut(s) 25, 116, 154, 320, 335, 404, 431, 551, 627
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 1 cut(s) 240
HpaII CCGG 1 cut(s) 647
HphI GGTGA 3 cut(s) 169, 353, 446
Hpy166II GTNNAC 2 cut(s) 396, 578
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 410, 548
Hpy8I GTNNAC 2 cut(s) 396, 578
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 118, 230
HpyCH4III ACNGT 4 cut(s) 37, 181, 280, 393
HpyCH4V TGCA 3 cut(s) 4, 360, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 5 cut(s) 30, 168, 411, 587, 593
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 9 cut(s) 25, 116, 154, 320, 335, 404, 431, 551, 627
Kzo9I GATC 1 cut(s) 562
LguI GCTCTTC 1 cut(s) 526
LmnI GCTCC 2 cut(s) 371, 412
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 1 cut(s) 347
MaeIII GTNAC 2 cut(s) 244, 434
MalI GATC 1 cut(s) 564
MboI GATC 1 cut(s) 562
MboII GAAGA 4 cut(s) 52, 272, 543, 627
MhlI GDGCHC 4 cut(s) 224, 376, 409, 538
MluCI AATT 3 cut(s) 93, 450, 525
MlyI GAGTC 1 cut(s) 249
MnlI CCTC 9 cut(s) 96, 115, 134, 185, 224, 324, 406, 469, 550
Mph1103I ATGCAT 1 cut(s) 362
MseI TTAA 3 cut(s) 72, 282, 506
MslI CAYNNNNRTG 3 cut(s) 330, 336, 432
MspI CCGG 1 cut(s) 647
MspR9I CCNGG 2 cut(s) 309, 440
MvaI CCWGG 2 cut(s) 309, 440
MwoI GCNNNNNNNGC 1 cut(s) 23
NcoI CCATGG 1 cut(s) 112
NdeII GATC 1 cut(s) 562
NlaIII CATG 9 cut(s) 25, 116, 154, 320, 335, 404, 431, 551, 627
NlaIV GGNNCC 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 434
NsiI ATGCAT 1 cut(s) 362
NspI RCATGY 1 cut(s) 627
PagI TCATGA 1 cut(s) 547
PaqCI CACCTGC 1 cut(s) 599
PciSI GCTCTTC 1 cut(s) 526
PflMI CCANNNNNTGG 1 cut(s) 509
PinAI ACCGGT 1 cut(s) 646
PkrI GCNGC 3 cut(s) 28, 163, 190
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PshAI GACNNNNGTC 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 307, 438
PspEI GGTNACC 1 cut(s) 434
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 2 cut(s) 307, 438
PspN4I GGNNCC 1 cut(s) 323
PspPI GGNCC 3 cut(s) 269, 311, 512
RseI CAYNNNNRTG 3 cut(s) 330, 336, 432
SapI GCTCTTC 1 cut(s) 526
SaqAI TTAA 3 cut(s) 72, 282, 506
SatI GCNGC 3 cut(s) 27, 162, 189
Sau3AI GATC 1 cut(s) 562
Sau96I GGNCC 3 cut(s) 269, 311, 512
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 2 cut(s) 309, 440
SduI GDGCHC 4 cut(s) 224, 376, 409, 538
SetI ASST 9 cut(s) 13, 31, 72, 132, 251, 441, 555, 613, 640
SfaNI GCATC 1 cut(s) 347
SgrAI CRCCGGYG 1 cut(s) 646
SinI GGWCC 2 cut(s) 269, 512
SmiMI CAYNNNNRTG 3 cut(s) 330, 336, 432
SmlI CTYRAG 4 cut(s) 125, 215, 250, 554
SmoI CTYRAG 4 cut(s) 125, 215, 250, 554
Sse9I AATT 3 cut(s) 93, 450, 525
SsiI CCGC 4 cut(s) 17, 162, 189, 431
StyD4I CCNGG 2 cut(s) 307, 438
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 4 cut(s) 37, 181, 280, 393
TasI AATT 3 cut(s) 93, 450, 525
TauI GCSGC 2 cut(s) 164, 191
Tru1I TTAA 3 cut(s) 72, 282, 506
Tru9I TTAA 3 cut(s) 72, 282, 506
TscAI CASTG 2 cut(s) 235, 604
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 3 cut(s) 36, 432, 536
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 2 cut(s) 235, 604
Van91I CCANNNNNTGG 1 cut(s) 509
VpaK11BI GGWCC 2 cut(s) 269, 512
XceI RCATGY 1 cut(s) 627
XcmI CCANNNNNNNNNTGG 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.