pycom11g12140

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011700
Physical Location & Seq
Forward (+)
11045957 .. 11049633
3677 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12140.1

Sequence Viewer

Length: 660 bp
ATGCAAGCAGCTTTGGCCGTCATGGCAGCTCAGACTGTCTTGCTTTCATCCCCCACTCTCTTCTCCCAACTCCAAATCCCTAACCCTCACTCAATTTCTCCTTCCTCCTTCCATGGCGTCACCCTCAAGCTCCCACTCAAATCCCAATCCATGTCTTTCGCCGCCGCCGCCCCTAAGCCTCTCACTGTCGTCGCCGCCACCAAGAAAGCCGTCTCTGTCCTCAAGGGCACTTCCAGTGTGGAAGGAGTCGTCACCTTGAGCCAAGAAAACGATGGTCCTACAACCGTGAATGTTCGTATTACTGGACTTACTCCCGGTCCTCATGGGTTTCACTTACATGAGTATGGTGATACGACAAATGGATGCATATCCACAGGACCACATTTCAATCCTAAACAGTTGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGCGACCTGGGAAACATAGTTGCTAATGCCGATGGGGTGGCAGAGGCAACAATCGTGGATAACCAGATACCATTAACTGGTCCTAATGCTGTAATTGGAAGAGCACTTGTTGTTCATGAGCTTGAGGATGACCTTGGAAAGGGTGGACACGAACTTAGTCTAAGCACTGGCAATGCAGGCGGAAGATTGGCATGTGGCGTGGTTGGTTTGACACCGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

220

Amino Acids

22.36

Weight (kDa)

6.02

Isoelectric Point (pI)

25.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 80 - 214 2.4e-49 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 515
AciI CCGC 6 cut(s) 162, 165, 168, 195, 437, 618
AcoI YGGCCR 1 cut(s) 15
AcyI GRCGYC 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 410
AfiI CCNNNNNNNGG 3 cut(s) 436, 515, 577
AgeI ACCGGT 1 cut(s) 652
AgsI TTSAA 1 cut(s) 388
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 4 cut(s) 11, 29, 130, 559
AluI AGCT 4 cut(s) 11, 29, 130, 559
Alw21I GWGCWC 2 cut(s) 415, 544
Alw26I GTCTC 1 cut(s) 217
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 2 cut(s) 8, 26
AsiGI ACCGGT 1 cut(s) 652
AspS9I GGNCC 4 cut(s) 275, 317, 377, 518
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 3 cut(s) 112, 244, 359
AvaII GGWCC 4 cut(s) 275, 317, 377, 518
AxyI CCTNAGG 1 cut(s) 417
BaeGI GKGCMC 1 cut(s) 230
Bbv12I GWGCWC 2 cut(s) 415, 544
BbvI GCAGC 2 cut(s) 20, 38
BccI CCATC 2 cut(s) 266, 464
BceAI ACGGC 2 cut(s) 2, 194
BciT130I CCWGG 1 cut(s) 446
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 217
BglI GCCNNNNNGGC 1 cut(s) 23
BisI GCNGC 6 cut(s) 9, 27, 162, 165, 168, 195
BlsI GCNGC 6 cut(s) 10, 28, 163, 166, 169, 196
Bme1390I CCNGG 2 cut(s) 315, 446
Bme18I GGWCC 4 cut(s) 275, 317, 377, 518
BmgT120I GGNCC 4 cut(s) 275, 317, 377, 518
BmrFI CCNGG 2 cut(s) 315, 446
BmsI GCATC 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 174
BpuEI CTTGAG 4 cut(s) 110, 206, 277, 581
BpuMI CCSGG 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 367
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 112, 445, 571
BsaWI WCCGGW 1 cut(s) 652
Bsc4I CCNNNNNNNGG 3 cut(s) 436, 515, 577
Bse118I RCCGGY 1 cut(s) 652
Bse1I ACTGG 4 cut(s) 234, 307, 520, 610
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 616
Bse8I GATNNNNATC 1 cut(s) 367
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 3 cut(s) 112, 445, 571
BseGI GGATG 4 cut(s) 47, 368, 427, 571
BseJI GATNNNNATC 1 cut(s) 367
BseLI CCNNNNNNNGG 3 cut(s) 436, 515, 577
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 2 cut(s) 44, 408
BseNI ACTGG 4 cut(s) 234, 307, 520, 610
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 2 cut(s) 20, 38
BshFI GGCC 1 cut(s) 17
BshTI ACCGGT 1 cut(s) 652
BsiHKAI GWGCWC 2 cut(s) 415, 544
BsiSI CCGG 2 cut(s) 315, 653
BslI CCNNNNNNNGG 3 cut(s) 436, 515, 577
BsmAI GTCTC 1 cut(s) 217
BsmBI CGTCTC 1 cut(s) 217
BsnI GGCC 1 cut(s) 17
Bsp1286I GDGCHC 3 cut(s) 230, 415, 544
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 6 cut(s) 162, 165, 168, 195, 437, 618
BspANI GGCC 1 cut(s) 17
BspCNI CTCAG 2 cut(s) 43, 409
BspHI TCATGA 1 cut(s) 553
BspQI GCTCTTC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 616
BsrFI RCCGGY 1 cut(s) 652
BsrI ACTGG 4 cut(s) 234, 307, 520, 610
BssAI RCCGGY 1 cut(s) 652
BssECI CCNNGG 3 cut(s) 112, 445, 571
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 2 cut(s) 112, 571
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 4 cut(s) 37, 187, 286, 399
Bst6I CTCTTC 2 cut(s) 65, 532
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 6, 439, 616
BstDEI CTNAG 5 cut(s) 30, 174, 417, 593, 599
BstDSI CCRYGG 1 cut(s) 112
BstENI CCTNNNNNAGG 1 cut(s) 575
BstF5I GGATG 4 cut(s) 47, 368, 427, 571
BstMAI GTCTC 1 cut(s) 217
BstMWI GCNNNNNNNGC 4 cut(s) 14, 23, 167, 615
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 633
BstSCI CCNGG 2 cut(s) 313, 444
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 20, 38
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 112
BtsCI GGATG 4 cut(s) 47, 368, 427, 571
BtsIMutI CAGTG 3 cut(s) 183, 241, 603
Cac8I GCNNGC 3 cut(s) 6, 439, 616
CciI TCATGA 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 652
Cfr13I GGNCC 4 cut(s) 275, 317, 377, 518
CseI GACGC 1 cut(s) 106
CspAI ACCGGT 1 cut(s) 652
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 9 cut(s) 22, 113, 151, 323, 338, 407, 434, 554, 630
CviJI RGCY 8 cut(s) 11, 17, 29, 130, 178, 209, 261, 559
CviKI_1 RGCY 8 cut(s) 11, 17, 29, 130, 178, 209, 261, 559
DdeI CTNAG 5 cut(s) 30, 174, 417, 593, 599
DraIII CACNNNGTG 1 cut(s) 410
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 65, 532
EarI CTCTTC 2 cut(s) 65, 532
EciI GGCGGA 1 cut(s) 633
Eco130I CCWWGG 2 cut(s) 112, 571
Eco47I GGWCC 4 cut(s) 275, 317, 377, 518
Eco81I CCTNAGG 1 cut(s) 417
EcoNI CCTNNNNNAGG 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 444
EcoT14I CCWWGG 2 cut(s) 112, 571
EcoT22I ATGCAT 1 cut(s) 368
ErhI CCWWGG 2 cut(s) 112, 571
Esp3I CGTCTC 1 cut(s) 217
FaeI CATG 9 cut(s) 25, 116, 154, 326, 341, 410, 437, 557, 633
FatI CATG 9 cut(s) 21, 112, 150, 322, 337, 406, 433, 553, 629
FauI CCCGC 1 cut(s) 430
Fnu4HI GCNGC 6 cut(s) 9, 27, 162, 165, 168, 195
FokI GGATG 4 cut(s) 34, 375, 434, 578
Fsp4HI GCNGC 6 cut(s) 9, 27, 162, 165, 168, 195
GluI GCNGC 6 cut(s) 9, 27, 162, 165, 168, 195
HaeIII GGCC 1 cut(s) 17
HapII CCGG 2 cut(s) 315, 653
HgaI GACGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 9 cut(s) 25, 116, 154, 326, 341, 410, 437, 557, 633
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HinfI GANTC 1 cut(s) 246
HpaII CCGG 2 cut(s) 315, 653
HphI GGTGA 3 cut(s) 112, 244, 359
Hpy166II GTNNAC 2 cut(s) 402, 584
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 416, 554
Hpy8I GTNNAC 2 cut(s) 402, 584
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 3 cut(s) 111, 118, 236
HpyCH4III ACNGT 4 cut(s) 37, 187, 286, 399
HpyCH4V TGCA 3 cut(s) 4, 366, 614
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 23, 167, 615
HpyF3I CTNAG 5 cut(s) 30, 174, 417, 593, 599
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 9 cut(s) 25, 116, 154, 326, 341, 410, 437, 557, 633
LguI GCTCTTC 1 cut(s) 532
LmnI GCTCC 2 cut(s) 135, 418
Lsp1109I GCAGC 2 cut(s) 20, 38
LweI GCATC 1 cut(s) 353
MaeIII GTNAC 2 cut(s) 118, 250
MboII GAAGA 3 cut(s) 52, 549, 633
MhlI GDGCHC 3 cut(s) 230, 415, 544
MluCI AATT 2 cut(s) 93, 531
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 9 cut(s) 96, 115, 134, 189, 230, 330, 412, 475, 556
Mph1103I ATGCAT 1 cut(s) 368
MseI TTAA 1 cut(s) 512
MslI CAYNNNNRTG 2 cut(s) 336, 342
MspI CCGG 2 cut(s) 315, 653
MspR9I CCNGG 2 cut(s) 315, 446
MvaI CCWGG 1 cut(s) 446
MwoI GCNNNNNNNGC 4 cut(s) 14, 23, 167, 615
NciI CCSGG 1 cut(s) 315
NcoI CCATGG 1 cut(s) 112
NlaIII CATG 9 cut(s) 25, 116, 154, 326, 341, 410, 437, 557, 633
NmuCI GTSAC 2 cut(s) 118, 250
NsiI ATGCAT 1 cut(s) 368
NspI RCATGY 1 cut(s) 633
PagI TCATGA 1 cut(s) 553
PciSI GCTCTTC 1 cut(s) 532
PflMI CCANNNNNTGG 1 cut(s) 515
PinAI ACCGGT 1 cut(s) 652
PkrI GCNGC 6 cut(s) 10, 28, 163, 166, 169, 196
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspPI GGNCC 4 cut(s) 275, 317, 377, 518
RseI CAYNNNNRTG 2 cut(s) 336, 342
SapI GCTCTTC 1 cut(s) 532
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 6 cut(s) 9, 27, 162, 165, 168, 195
Sau96I GGNCC 4 cut(s) 275, 317, 377, 518
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 2 cut(s) 315, 446
SduI GDGCHC 3 cut(s) 230, 415, 544
SetI ASST 7 cut(s) 13, 31, 132, 257, 447, 561, 573
SfaNI GCATC 1 cut(s) 353
SgrAI CRCCGGYG 1 cut(s) 652
SinI GGWCC 4 cut(s) 275, 317, 377, 518
SmiMI CAYNNNNRTG 2 cut(s) 336, 342
SmlI CTYRAG 4 cut(s) 125, 221, 256, 560
SmoI CTYRAG 4 cut(s) 125, 221, 256, 560
Sse9I AATT 2 cut(s) 93, 531
SsiI CCGC 6 cut(s) 162, 165, 168, 195, 437, 618
StyD4I CCNGG 2 cut(s) 313, 444
StyI CCWWGG 2 cut(s) 112, 571
TaaI ACNGT 4 cut(s) 37, 187, 286, 399
TasI AATT 2 cut(s) 93, 531
TauI GCSGC 4 cut(s) 164, 167, 170, 197
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 3 cut(s) 190, 241, 610
TseFI GTSAC 2 cut(s) 118, 250
TseI GCWGC 2 cut(s) 8, 26
Tsp45I GTSAC 2 cut(s) 118, 250
TspDTI ATGAA 3 cut(s) 36, 438, 542
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 3 cut(s) 190, 241, 610
Van91I CCANNNNNTGG 1 cut(s) 515
VpaK11BI GGWCC 4 cut(s) 275, 317, 377, 518
XagI CCTNNNNNAGG 1 cut(s) 575
XceI RCATGY 1 cut(s) 633
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.