RchiOBHm_Chr5g0056701

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011700
Physical Location & Seq
Reverse (-)
60486108 .. 60494285
8178 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33358

Sequence Viewer

Length: 513 bp
ATGTCTCTCGCCGCCGCCGCCGCCCCCAAGCCCCTCACCGTCGCCGCCGCCACCAAGAAGGCCGTCGCCGTTCTCAAGGGCACTTCAACCGTCGAAGGCGTCGTTACCTTGACCCAAGAAGATGAAGGTCCTACAACTGTGAATGTTCGTATTACTGGACTTACACCTGGGCCTCATGGGTTCCACTTGCATGAGTTTGGTGACACGACTAATGGATGCATTTCCACAGGAGCACATTTCAATCCTAAAAACTTGACTCATGGAGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAATTGCTAATGCCGATGGAGTGGCAGAGGCAACAATCGTGGATAGCCAGATACCATTAACTGGTCCTAATGCTGTAATTGGAAGAGCCTTGGTGGTTCATGAACTTGAGGATGACCTTGGAAAGGGTGGACATGAACTTAGTCTAAGCACTGGCAATGCAGGTGGACGATTGGCATGTGGTGTGGTTGGTTTGACTCCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

170

Amino Acids

17.07

Weight (kDa)

5.35

Isoelectric Point (pI)

15.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 31 - 165 4e-50 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 458
Acc36I ACCTGC 1 cut(s) 458
AccB7I CCANNNNNTGG 1 cut(s) 368
AciI CCGC 7 cut(s) 12, 15, 18, 21, 45, 48, 290
AcyI GRCGYC 1 cut(s) 99
AfiI CCNNNNNNNGG 3 cut(s) 289, 368, 430
AgsI TTSAA 2 cut(s) 87, 241
AjnI CCWGG 2 cut(s) 166, 297
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw21I GWGCWC 2 cut(s) 235, 268
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 2 cut(s) 60, 170
AspS9I GGNCC 3 cut(s) 128, 170, 371
AsuHPI GGTGA 3 cut(s) 28, 212, 305
AvaII GGWCC 2 cut(s) 128, 371
AxyI CCTNAGG 1 cut(s) 270
BaeGI GKGCMC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 268
Bbv12I GWGCWC 2 cut(s) 235, 268
BccI CCATC 1 cut(s) 317
BceAI ACGGC 2 cut(s) 47, 53
BciT130I CCWGG 2 cut(s) 168, 299
BcoDI GTCTC 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 458
BisI GCNGC 6 cut(s) 12, 15, 18, 21, 45, 48
BlsI GCNGC 6 cut(s) 13, 16, 19, 22, 46, 49
Bme1390I CCNGG 2 cut(s) 168, 299
Bme18I GGWCC 2 cut(s) 128, 371
BmgT120I GGNCC 3 cut(s) 128, 170, 371
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 168, 299
BmsI GCATC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 489
BpuEI CTTGAG 2 cut(s) 59, 434
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 4 cut(s) 167, 298, 396, 424
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 368, 430
Bse1I ACTGG 4 cut(s) 160, 373, 463, 506
Bse21I CCTNAGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 2 cut(s) 168, 299
BseDI CCNNGG 4 cut(s) 167, 298, 396, 424
BseGI GGATG 3 cut(s) 221, 280, 424
BseLI CCNNNNNNNGG 3 cut(s) 289, 368, 430
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 4 cut(s) 160, 373, 463, 506
BseSI GKGCMC 1 cut(s) 83
BshFI GGCC 2 cut(s) 62, 172
BsiHKAI GWGCWC 2 cut(s) 235, 268
BslI CCNNNNNNNGG 3 cut(s) 289, 368, 430
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 2 cut(s) 62, 172
Bsp1286I GDGCHC 3 cut(s) 83, 235, 268
BspACI CCGC 7 cut(s) 12, 15, 18, 21, 45, 48, 290
BspANI GGCC 2 cut(s) 62, 172
BspCNI CTCAG 1 cut(s) 262
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 182
BspMI ACCTGC 1 cut(s) 458
BspQI GCTCTTC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 469
BsrI ACTGG 4 cut(s) 160, 373, 463, 506
BssECI CCNNGG 4 cut(s) 167, 298, 396, 424
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 396, 424
Bst2UI CCWGG 2 cut(s) 168, 299
Bst4CI ACNGT 3 cut(s) 40, 91, 139
Bst6I CTCTTC 1 cut(s) 385
BstACI GRCGYC 1 cut(s) 99
BstDEI CTNAG 3 cut(s) 270, 446, 452
BstEII GGTNACC 1 cut(s) 293
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 3 cut(s) 221, 280, 424
BstMAI GTCTC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 17, 20
BstNI CCWGG 2 cut(s) 168, 299
BstNSI RCATGY 1 cut(s) 486
BstPI GGTNACC 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 166, 297
BstSLI GKGCMC 1 cut(s) 83
Bsu36I CCTNAGG 1 cut(s) 270
BsuRI GGCC 2 cut(s) 62, 172
BtsCI GGATG 3 cut(s) 221, 280, 424
BtsIMutI CAGTG 2 cut(s) 456, 513
BveI ACCTGC 1 cut(s) 458
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 3 cut(s) 128, 170, 371
CseI GACGC 1 cut(s) 88
CspCI CAANNNNNGTGG 4 cut(s) 327, 362, 451, 486
CviAII CATG 7 cut(s) 176, 191, 260, 287, 407, 440, 483
CviJI RGCY 6 cut(s) 31, 62, 172, 266, 354, 395
CviKI_1 RGCY 6 cut(s) 31, 62, 172, 266, 354, 395
DdeI CTNAG 3 cut(s) 270, 446, 452
Eam1104I CTCTTC 1 cut(s) 385
EarI CTCTTC 1 cut(s) 385
Ecl136II GAGCTC 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 396, 424
Eco24I GRGCYC 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 128, 371
Eco53kI GAGCTC 1 cut(s) 266
Eco81I CCTNAGG 1 cut(s) 270
Eco91I GGTNACC 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 166, 297
EcoT14I CCWWGG 2 cut(s) 396, 424
EcoT22I ATGCAT 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 2 cut(s) 396, 424
FaeI CATG 7 cut(s) 179, 194, 263, 290, 410, 443, 486
FaiI YATR 8 cut(s) 177, 192, 261, 288, 308, 408, 441, 484
FatI CATG 7 cut(s) 175, 190, 259, 286, 406, 439, 482
FauI CCCGC 1 cut(s) 283
Fnu4HI GCNGC 6 cut(s) 12, 15, 18, 21, 45, 48
FokI GGATG 3 cut(s) 228, 287, 431
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 6 cut(s) 12, 15, 18, 21, 45, 48
GluI GCNGC 6 cut(s) 12, 15, 18, 21, 45, 48
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 2 cut(s) 62, 172
HgaI GACGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 7 cut(s) 179, 194, 263, 290, 410, 443, 486
HinfI GANTC 2 cut(s) 256, 502
HphI GGTGA 3 cut(s) 28, 212, 305
Hpy166II GTNNAC 2 cut(s) 437, 473
Hpy188III TCNNGA 2 cut(s) 269, 407
Hpy8I GTNNAC 2 cut(s) 437, 473
Hpy99I CGWCG 4 cut(s) 44, 68, 95, 104
HpyAV CCTTC 3 cut(s) 52, 89, 119
HpyCH4III ACNGT 3 cut(s) 40, 91, 139
HpyCH4V TGCA 3 cut(s) 190, 219, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 20
HpyF3I CTNAG 3 cut(s) 270, 446, 452
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 7 cut(s) 179, 194, 263, 290, 410, 443, 486
LguI GCTCTTC 1 cut(s) 385
LmnI GCTCC 3 cut(s) 230, 263, 271
LweI GCATC 1 cut(s) 206
MaeIII GTNAC 3 cut(s) 103, 200, 293
MboII GAAGA 2 cut(s) 131, 402
MhlI GDGCHC 3 cut(s) 83, 235, 268
MluCI AATT 2 cut(s) 309, 384
MlyI GAGTC 2 cut(s) 250, 496
MnlI CCTC 5 cut(s) 44, 183, 265, 328, 409
Mph1103I ATGCAT 1 cut(s) 221
MseI TTAA 1 cut(s) 365
MslI CAYNNNNRTG 2 cut(s) 189, 291
MspR9I CCNGG 2 cut(s) 168, 299
MvaI CCWGG 2 cut(s) 168, 299
MwoI GCNNNNNNNGC 2 cut(s) 17, 20
NlaIII CATG 7 cut(s) 179, 194, 263, 290, 410, 443, 486
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 200, 293
NsiI ATGCAT 1 cut(s) 221
NspI RCATGY 1 cut(s) 486
PagI TCATGA 1 cut(s) 406
PaqCI CACCTGC 1 cut(s) 458
PciSI GCTCTTC 1 cut(s) 385
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PflMI CCANNNNNTGG 1 cut(s) 368
PkrI GCNGC 6 cut(s) 13, 16, 19, 22, 46, 49
PleI GAGTC 2 cut(s) 250, 496
PpsI GAGTC 2 cut(s) 250, 496
PpuMI RGGWCCY 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 166, 297
PspEI GGTNACC 1 cut(s) 293
PspGI CCWGG 2 cut(s) 166, 297
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 3 cut(s) 128, 170, 371
PspPPI RGGWCCY 1 cut(s) 128
RseI CAYNNNNRTG 2 cut(s) 189, 291
SacI GAGCTC 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 385
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 6 cut(s) 12, 15, 18, 21, 45, 48
Sau96I GGNCC 3 cut(s) 128, 170, 371
SchI GAGTC 2 cut(s) 250, 496
ScrFI CCNGG 2 cut(s) 168, 299
SduI GDGCHC 3 cut(s) 83, 235, 268
SetI ASST 7 cut(s) 110, 130, 169, 268, 300, 426, 472
SfaNI GCATC 1 cut(s) 206
SinI GGWCC 2 cut(s) 128, 371
SmiMI CAYNNNNRTG 2 cut(s) 189, 291
SmlI CTYRAG 2 cut(s) 74, 413
SmoI CTYRAG 2 cut(s) 74, 413
Sse9I AATT 2 cut(s) 309, 384
SsiI CCGC 7 cut(s) 12, 15, 18, 21, 45, 48, 290
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 166, 297
StyI CCWWGG 2 cut(s) 396, 424
TaaI ACNGT 3 cut(s) 40, 91, 139
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 309, 384
TauI GCSGC 6 cut(s) 14, 17, 20, 23, 47, 50
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 2 cut(s) 463, 513
TseFI GTSAC 2 cut(s) 200, 293
Tsp45I GTSAC 2 cut(s) 200, 293
TspDTI ATGAA 5 cut(s) 138, 291, 395, 423, 456
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 2 cut(s) 463, 513
Van91I CCANNNNNTGG 1 cut(s) 368
VpaK11BI GGWCC 2 cut(s) 128, 371
XagI CCTNNNNNAGG 1 cut(s) 428
XceI RCATGY 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.