Rroxscaffold_1G00023640

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011700
Physical Location & Seq
Forward (+)
29220470 .. 29222679
2210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023640.1

Sequence Viewer

Length: 675 bp
ATGCAAGCAGCACTGGCGGCCATGGCAGCCCACTCTGTGATACTCTCAGCCTACACATCCCCCACTCTCTTCGCCCCAATTCAAACCCCTAACCCCCACCCAACTCTCCACTCCTCCTTCCATGGCGTCTCTCTCAAGCTCCCCATCAAATCCCAATCCCAATCCATGTCTCTCGCCGCCGCCGCCGCCCCCAAGCCCCTCACCGTCGTCGCCGCCACCAAGAAGGCCGTCGCCGTCCTCAAGGGCACTTCAACCGTCGAAGGCGTCGTCACCTTGACCCAAGAAGATGACGGTCCTACAACTGTGAATGTTCGTATTACTGGACTTACACCTGGGCCCCATGGGTTCCACTTGCATGAGTTTGGTGACACGACAAATGGATGCATTTCCACAGGAGCACATTTCAATCCTAAAAACTTGACTCATGGAGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAATTGCTAATGCCGATGGAGTGGCAGAGGCAACAATCGTGGATAGCCAGATACCATTAACTGGTCCTAATGCTGTAATTGGAAGAGCCTTGGTGGTTCATGAACTCGAGGATGACCTTGGAAAGGGTGGACATGAACTTAGTCTAAGCACTGGCAATGCAGGTGGACGATTGGCATGTGGTAAGCAAGCAGTTTTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

224

Amino Acids

22.84

Weight (kDa)

6.14

Isoelectric Point (pI)

23.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 86 - 218 1.2e-48 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 623
Acc36I ACCTGC 1 cut(s) 623
AccB7I CCANNNNNTGG 1 cut(s) 533
AciI CCGC 7 cut(s) 17, 177, 180, 183, 186, 213, 455
AcoI YGGCCR 1 cut(s) 18
AcyI GRCGYC 2 cut(s) 126, 264
AdeI CACNNNGTG 1 cut(s) 37
AfiI CCNNNNNNNGG 3 cut(s) 454, 533, 595
AgsI TTSAA 3 cut(s) 83, 252, 406
AjnI CCWGG 2 cut(s) 331, 462
AluBI AGCT 2 cut(s) 139, 431
AluI AGCT 2 cut(s) 139, 431
Alw21I GWGCWC 2 cut(s) 400, 433
Alw26I GTCTC 2 cut(s) 133, 174
Ama87I CYCGRG 1 cut(s) 578
AoxI GGCC 3 cut(s) 18, 225, 335
ApaI GGGCCC 1 cut(s) 339
ApeKI GCWGC 2 cut(s) 8, 26
ArsI GACNNNNNNTTYG 2 cut(s) 252, 284
AspS9I GGNCC 4 cut(s) 293, 335, 336, 536
AsuHPI GGTGA 4 cut(s) 193, 262, 377, 470
AvaI CYCGRG 1 cut(s) 578
AvaII GGWCC 2 cut(s) 293, 536
AxyI CCTNAGG 1 cut(s) 435
BaeGI GKGCMC 2 cut(s) 248, 339
BanII GRGCYC 2 cut(s) 339, 433
Bbv12I GWGCWC 2 cut(s) 400, 433
BbvI GCAGC 2 cut(s) 20, 38
BccI CCATC 2 cut(s) 152, 482
BceAI ACGGC 2 cut(s) 212, 218
BciT130I CCWGG 2 cut(s) 333, 464
BcoDI GTCTC 2 cut(s) 133, 174
BfuAI ACCTGC 1 cut(s) 623
BisI GCNGC 8 cut(s) 9, 18, 27, 177, 180, 183, 186, 213
BlsI GCNGC 8 cut(s) 10, 19, 28, 178, 181, 184, 187, 214
Bme1390I CCNGG 2 cut(s) 333, 464
Bme18I GGWCC 2 cut(s) 293, 536
BmeT110I CYCGRG 1 cut(s) 578
BmgT120I GGNCC 4 cut(s) 293, 335, 336, 536
BmiI GGNNCC 3 cut(s) 337, 338, 347
BmrFI CCNGG 2 cut(s) 333, 464
BmsI GCATC 1 cut(s) 371
BpuEI CTTGAG 2 cut(s) 119, 224
BsaHI GRCGYC 2 cut(s) 126, 264
BsaJI CCNNGG 7 cut(s) 21, 121, 332, 340, 463, 561, 589
Bsc4I CCNNNNNNNGG 3 cut(s) 454, 533, 595
Bse1I ACTGG 4 cut(s) 18, 325, 538, 628
Bse21I CCTNAGG 1 cut(s) 435
Bse3DI GCAATG 1 cut(s) 634
BseBI CCWGG 2 cut(s) 333, 464
BseDI CCNNGG 7 cut(s) 21, 121, 332, 340, 463, 561, 589
BseGI GGATG 4 cut(s) 56, 386, 445, 589
BseLI CCNNNNNNNGG 3 cut(s) 454, 533, 595
BseMI GCAATG 1 cut(s) 634
BseMII CTCAG 2 cut(s) 60, 426
BseNI ACTGG 4 cut(s) 18, 325, 538, 628
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 2 cut(s) 248, 339
BseXI GCAGC 2 cut(s) 20, 38
BshFI GGCC 3 cut(s) 20, 227, 337
BsiHKAI GWGCWC 2 cut(s) 400, 433
BsiHKCI CYCGRG 1 cut(s) 578
BslI CCNNNNNNNGG 3 cut(s) 454, 533, 595
BsmAI GTCTC 2 cut(s) 133, 174
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 3 cut(s) 20, 227, 337
BsoBI CYCGRG 1 cut(s) 578
Bsp120I GGGCCC 1 cut(s) 335
Bsp1286I GDGCHC 4 cut(s) 248, 339, 400, 433
Bsp19I CCATGG 3 cut(s) 21, 121, 340
BspACI CCGC 7 cut(s) 17, 177, 180, 183, 186, 213, 455
BspANI GGCC 3 cut(s) 20, 227, 337
BspCNI CTCAG 2 cut(s) 59, 427
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 3 cut(s) 337, 338, 347
BspMI ACCTGC 1 cut(s) 623
BspQI GCTCTTC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 634
BsrI ACTGG 4 cut(s) 18, 325, 538, 628
BssECI CCNNGG 7 cut(s) 21, 121, 332, 340, 463, 561, 589
BssNI GRCGYC 2 cut(s) 126, 264
BssT1I CCWWGG 5 cut(s) 21, 121, 340, 561, 589
Bst2UI CCWGG 2 cut(s) 333, 464
Bst4CI ACNGT 4 cut(s) 205, 256, 293, 304
Bst6I CTCTTC 2 cut(s) 74, 550
BstACI GRCGYC 2 cut(s) 126, 264
BstC8I GCNNGC 2 cut(s) 6, 660
BstDEI CTNAG 4 cut(s) 46, 435, 611, 617
BstDSI CCRYGG 3 cut(s) 21, 121, 340
BstEII GGTNACC 1 cut(s) 458
BstENI CCTNNNNNAGG 1 cut(s) 593
BstF5I GGATG 4 cut(s) 56, 386, 445, 589
BstMAI GTCTC 2 cut(s) 133, 174
BstMWI GCNNNNNNNGC 6 cut(s) 14, 17, 23, 26, 182, 185
BstNI CCWGG 2 cut(s) 333, 464
BstNSI RCATGY 1 cut(s) 651
BstPI GGTNACC 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 331, 462
BstSLI GKGCMC 2 cut(s) 248, 339
BstV1I GCAGC 2 cut(s) 20, 38
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 3 cut(s) 20, 227, 337
BtgI CCRYGG 3 cut(s) 21, 121, 340
BtsCI GGATG 4 cut(s) 56, 386, 445, 589
BtsIMutI CAGTG 2 cut(s) 11, 621
BveI ACCTGC 1 cut(s) 623
Cac8I GCNNGC 2 cut(s) 6, 660
CciI TCATGA 1 cut(s) 571
Cfr13I GGNCC 4 cut(s) 293, 335, 336, 536
CseI GACGC 2 cut(s) 115, 253
CspCI CAANNNNNGTGG 4 cut(s) 492, 527, 616, 651
DdeI CTNAG 4 cut(s) 46, 435, 611, 617
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 2 cut(s) 74, 550
EarI CTCTTC 2 cut(s) 74, 550
Ecl136II GAGCTC 1 cut(s) 431
Eco130I CCWWGG 5 cut(s) 21, 121, 340, 561, 589
Eco24I GRGCYC 2 cut(s) 339, 433
Eco47I GGWCC 2 cut(s) 293, 536
Eco53kI GAGCTC 1 cut(s) 431
Eco81I CCTNAGG 1 cut(s) 435
Eco88I CYCGRG 1 cut(s) 578
Eco91I GGTNACC 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 593
EcoO109I RGGNCCY 1 cut(s) 336
EcoO65I GGTNACC 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 331, 462
EcoT14I CCWWGG 5 cut(s) 21, 121, 340, 561, 589
EcoT22I ATGCAT 1 cut(s) 386
EcoT38I GRGCYC 2 cut(s) 339, 433
ErhI CCWWGG 5 cut(s) 21, 121, 340, 561, 589
Esp3I CGTCTC 1 cut(s) 133
FauI CCCGC 1 cut(s) 448
Fnu4HI GCNGC 8 cut(s) 9, 18, 27, 177, 180, 183, 186, 213
FokI GGATG 4 cut(s) 43, 393, 452, 596
FriOI GRGCYC 2 cut(s) 339, 433
Fsp4HI GCNGC 8 cut(s) 9, 18, 27, 177, 180, 183, 186, 213
GluI GCNGC 8 cut(s) 9, 18, 27, 177, 180, 183, 186, 213
HaeIII GGCC 3 cut(s) 20, 227, 337
HgaI GACGC 2 cut(s) 115, 253
Hin1I GRCGYC 2 cut(s) 126, 264
HinfI GANTC 1 cut(s) 421
HphI GGTGA 4 cut(s) 193, 262, 377, 470
Hpy166II GTNNAC 2 cut(s) 602, 638
Hpy188III TCNNGA 2 cut(s) 434, 572
Hpy8I GTNNAC 2 cut(s) 602, 638
Hpy99I CGWCG 5 cut(s) 209, 212, 233, 260, 269
HpyAV CCTTC 3 cut(s) 127, 217, 254
HpyCH4III ACNGT 4 cut(s) 205, 256, 293, 304
HpyCH4V TGCA 4 cut(s) 4, 355, 384, 632
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 17, 23, 26, 182, 185
HpyF3I CTNAG 4 cut(s) 46, 435, 611, 617
Hsp92I GRCGYC 2 cut(s) 126, 264
LguI GCTCTTC 1 cut(s) 550
LmnI GCTCC 4 cut(s) 144, 395, 428, 436
Lsp1109I GCAGC 2 cut(s) 20, 38
LweI GCATC 1 cut(s) 371
MaeIII GTNAC 3 cut(s) 268, 365, 458
MboII GAAGA 3 cut(s) 61, 296, 567
MhlI GDGCHC 4 cut(s) 248, 339, 400, 433
MluCI AATT 3 cut(s) 78, 474, 549
MlyI GAGTC 1 cut(s) 415
MnlI CCTC 6 cut(s) 124, 209, 248, 430, 493, 574
Mph1103I ATGCAT 1 cut(s) 386
MseI TTAA 1 cut(s) 530
MslI CAYNNNNRTG 2 cut(s) 354, 456
MspR9I CCNGG 2 cut(s) 333, 464
MvaI CCWGG 2 cut(s) 333, 464
MwoI GCNNNNNNNGC 6 cut(s) 14, 17, 23, 26, 182, 185
NcoI CCATGG 3 cut(s) 21, 121, 340
NlaIV GGNNCC 3 cut(s) 337, 338, 347
NmuCI GTSAC 3 cut(s) 268, 365, 458
NsiI ATGCAT 1 cut(s) 386
NspI RCATGY 1 cut(s) 651
PaeR7I CTCGAG 1 cut(s) 578
PagI TCATGA 1 cut(s) 571
PaqCI CACCTGC 1 cut(s) 623
PciSI GCTCTTC 1 cut(s) 550
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PflMI CCANNNNNTGG 1 cut(s) 533
PkrI GCNGC 8 cut(s) 10, 19, 28, 178, 181, 184, 187, 214
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
Psp124BI GAGCTC 1 cut(s) 433
Psp6I CCWGG 2 cut(s) 331, 462
PspEI GGTNACC 1 cut(s) 458
PspGI CCWGG 2 cut(s) 331, 462
PspN4I GGNNCC 3 cut(s) 337, 338, 347
PspOMI GGGCCC 1 cut(s) 335
PspPI GGNCC 4 cut(s) 293, 335, 336, 536
PspXI VCTCGAGB 1 cut(s) 578
RseI CAYNNNNRTG 2 cut(s) 354, 456
SacI GAGCTC 1 cut(s) 433
SapI GCTCTTC 1 cut(s) 550
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 8 cut(s) 9, 18, 27, 177, 180, 183, 186, 213
Sau96I GGNCC 4 cut(s) 293, 335, 336, 536
SchI GAGTC 1 cut(s) 415
ScrFI CCNGG 2 cut(s) 333, 464
SduI GDGCHC 4 cut(s) 248, 339, 400, 433
SetI ASST 7 cut(s) 141, 275, 334, 433, 465, 591, 637
SfaNI GCATC 1 cut(s) 371
Sfr274I CTCGAG 1 cut(s) 578
SinI GGWCC 2 cut(s) 293, 536
SlaI CTCGAG 1 cut(s) 578
SmiMI CAYNNNNRTG 2 cut(s) 354, 456
SmlI CTYRAG 3 cut(s) 134, 239, 578
SmoI CTYRAG 3 cut(s) 134, 239, 578
Sse9I AATT 3 cut(s) 78, 474, 549
SsiI CCGC 7 cut(s) 17, 177, 180, 183, 186, 213, 455
SstI GAGCTC 1 cut(s) 433
StyD4I CCNGG 2 cut(s) 331, 462
StyI CCWWGG 5 cut(s) 21, 121, 340, 561, 589
TaaI ACNGT 4 cut(s) 205, 256, 293, 304
TaqI TCGA 2 cut(s) 258, 579
TasI AATT 3 cut(s) 78, 474, 549
TauI GCSGC 6 cut(s) 20, 179, 182, 185, 188, 215
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TscAI CASTG 2 cut(s) 18, 628
TseFI GTSAC 3 cut(s) 268, 365, 458
TseI GCWGC 2 cut(s) 8, 26
Tsp45I GTSAC 3 cut(s) 268, 365, 458
TspDTI ATGAA 4 cut(s) 456, 560, 588, 621
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 2 cut(s) 18, 628
Van91I CCANNNNNTGG 1 cut(s) 533
VpaK11BI GGWCC 2 cut(s) 293, 536
XagI CCTNNNNNAGG 1 cut(s) 593
XceI RCATGY 1 cut(s) 651
XhoI CTCGAG 1 cut(s) 578
Zsp2I ATGCAT 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.