Rh5CG406700

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011700
Physical Location & Seq
Reverse (-)
54516072 .. 54523654
7583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG406700.1

Sequence Viewer

Length: 657 bp
ATGGCAGCCCACTCTATGATACTCTCAGCCTACACATCCCCCACTCTCTTCGCCCCAATTCAAACCCCCAACCCCCACCCAACTCTCCACTCCTCCTTCCATGGCGTCTCTCTCAAGCTCCCCATCAAATCCCAATCCCAATCCATGTCTCTCGCCGCCGCCGCCGCCCCCAAGCCCCTCACCGTCGCCGCCGCCACCAAGAAGGCCGTCGCCGTTCTCAAGGGCACTTCAACCGTCGAAGGCGTCGTTACCTTGACCCAAGAAGATGAAGGTCCTACAACTGTGAATGTTCGTATTACTGGACTTACACCTGGGCCTCATGGGTTCCACTTGCATGAGTTTGGTGACACGACTAATGGATGCATTTCCACAGGAGCACATTTCAATCCTAAAAACTTGACTCATGGAGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAATTGCTAATGCCGATGGAGTGGCAGAGGCAACAATCGTGGATAGCCAGATACCATTAACTGGTCCTAATGCTGTAATTGGAAGAGCCTTGGTGGTTCATGAACTTGAGGATGACCTTGGAAAGGGTGGACATGAACTTAGTCTAAGCACTGGCAATGCAGGTGGACGATTGGCATGTGGTGTGGTTGGTTTGACTCCAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

218

Amino Acids

22.21

Weight (kDa)

6.02

Isoelectric Point (pI)

23.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 79 - 213 8.8e-50 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 602
Acc36I ACCTGC 1 cut(s) 602
AccB7I CCANNNNNTGG 1 cut(s) 512
AciI CCGC 7 cut(s) 156, 159, 162, 165, 189, 192, 434
AcyI GRCGYC 2 cut(s) 105, 243
AfiI CCNNNNNNNGG 3 cut(s) 433, 512, 574
AgsI TTSAA 3 cut(s) 62, 231, 385
AjnI CCWGG 2 cut(s) 310, 441
AluBI AGCT 2 cut(s) 118, 410
AluI AGCT 2 cut(s) 118, 410
Alw21I GWGCWC 2 cut(s) 379, 412
Alw26I GTCTC 2 cut(s) 112, 153
AoxI GGCC 2 cut(s) 204, 314
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 3 cut(s) 272, 314, 515
AsuHPI GGTGA 3 cut(s) 172, 356, 449
AvaII GGWCC 2 cut(s) 272, 515
AxyI CCTNAGG 1 cut(s) 414
BaeGI GKGCMC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 412
Bbv12I GWGCWC 2 cut(s) 379, 412
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 131, 461
BceAI ACGGC 2 cut(s) 191, 197
BciT130I CCWGG 2 cut(s) 312, 443
BcoDI GTCTC 2 cut(s) 112, 153
BfuAI ACCTGC 1 cut(s) 602
BisI GCNGC 7 cut(s) 6, 156, 159, 162, 165, 189, 192
BlsI GCNGC 7 cut(s) 7, 157, 160, 163, 166, 190, 193
Bme1390I CCNGG 2 cut(s) 312, 443
Bme18I GGWCC 2 cut(s) 272, 515
BmgT120I GGNCC 3 cut(s) 272, 314, 515
BmiI GGNNCC 1 cut(s) 326
BmrFI CCNGG 2 cut(s) 312, 443
BmsI GCATC 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 633
BpuEI CTTGAG 3 cut(s) 98, 203, 578
BsaHI GRCGYC 2 cut(s) 105, 243
BsaJI CCNNGG 5 cut(s) 100, 311, 442, 540, 568
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 512, 574
Bse1I ACTGG 4 cut(s) 304, 517, 607, 650
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 613
BseBI CCWGG 2 cut(s) 312, 443
BseDI CCNNGG 5 cut(s) 100, 311, 442, 540, 568
BseGI GGATG 4 cut(s) 35, 365, 424, 568
BseLI CCNNNNNNNGG 3 cut(s) 433, 512, 574
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 2 cut(s) 39, 405
BseNI ACTGG 4 cut(s) 304, 517, 607, 650
BseRI GAGGAG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 206, 316
BsiHKAI GWGCWC 2 cut(s) 379, 412
BslI CCNNNNNNNGG 3 cut(s) 433, 512, 574
BsmAI GTCTC 2 cut(s) 112, 153
BsmBI CGTCTC 1 cut(s) 112
BsnI GGCC 2 cut(s) 206, 316
Bsp1286I GDGCHC 3 cut(s) 227, 379, 412
Bsp19I CCATGG 1 cut(s) 100
BspACI CCGC 7 cut(s) 156, 159, 162, 165, 189, 192, 434
BspANI GGCC 2 cut(s) 206, 316
BspCNI CTCAG 2 cut(s) 38, 406
BspHI TCATGA 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 326
BspMI ACCTGC 1 cut(s) 602
BspQI GCTCTTC 1 cut(s) 529
BsrDI GCAATG 1 cut(s) 613
BsrI ACTGG 4 cut(s) 304, 517, 607, 650
BssECI CCNNGG 5 cut(s) 100, 311, 442, 540, 568
BssNI GRCGYC 2 cut(s) 105, 243
BssT1I CCWWGG 3 cut(s) 100, 540, 568
Bst2UI CCWGG 2 cut(s) 312, 443
Bst4CI ACNGT 3 cut(s) 184, 235, 283
Bst6I CTCTTC 2 cut(s) 53, 529
BstACI GRCGYC 2 cut(s) 105, 243
BstDEI CTNAG 4 cut(s) 25, 414, 590, 596
BstDSI CCRYGG 1 cut(s) 100
BstEII GGTNACC 1 cut(s) 437
BstENI CCTNNNNNAGG 1 cut(s) 572
BstF5I GGATG 4 cut(s) 35, 365, 424, 568
BstMAI GTCTC 2 cut(s) 112, 153
BstMWI GCNNNNNNNGC 2 cut(s) 161, 164
BstNI CCWGG 2 cut(s) 312, 443
BstNSI RCATGY 1 cut(s) 630
BstPI GGTNACC 1 cut(s) 437
BstSCI CCNGG 2 cut(s) 310, 441
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 17
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 2 cut(s) 206, 316
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 4 cut(s) 35, 365, 424, 568
BtsIMutI CAGTG 2 cut(s) 600, 657
BveI ACCTGC 1 cut(s) 602
CciI TCATGA 1 cut(s) 550
Cfr13I GGNCC 3 cut(s) 272, 314, 515
CseI GACGC 2 cut(s) 94, 232
CspCI CAANNNNNGTGG 4 cut(s) 471, 506, 595, 630
CviAII CATG 9 cut(s) 101, 145, 320, 335, 404, 431, 551, 584, 627
CviJI RGCY 9 cut(s) 8, 29, 118, 175, 206, 316, 410, 498, 539
CviKI_1 RGCY 9 cut(s) 8, 29, 118, 175, 206, 316, 410, 498, 539
DdeI CTNAG 4 cut(s) 25, 414, 590, 596
Eam1104I CTCTTC 2 cut(s) 53, 529
EarI CTCTTC 2 cut(s) 53, 529
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 3 cut(s) 100, 540, 568
Eco24I GRGCYC 1 cut(s) 412
Eco47I GGWCC 2 cut(s) 272, 515
Eco53kI GAGCTC 1 cut(s) 410
Eco81I CCTNAGG 1 cut(s) 414
Eco91I GGTNACC 1 cut(s) 437
EcoICRI GAGCTC 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 572
EcoO109I RGGNCCY 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 310, 441
EcoT14I CCWWGG 3 cut(s) 100, 540, 568
EcoT22I ATGCAT 1 cut(s) 365
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 3 cut(s) 100, 540, 568
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 9 cut(s) 104, 148, 323, 338, 407, 434, 554, 587, 630
FatI CATG 9 cut(s) 100, 144, 319, 334, 403, 430, 550, 583, 626
FauI CCCGC 1 cut(s) 427
Fnu4HI GCNGC 7 cut(s) 6, 156, 159, 162, 165, 189, 192
FokI GGATG 4 cut(s) 22, 372, 431, 575
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 7 cut(s) 6, 156, 159, 162, 165, 189, 192
GluI GCNGC 7 cut(s) 6, 156, 159, 162, 165, 189, 192
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 2 cut(s) 206, 316
HgaI GACGC 2 cut(s) 94, 232
Hin1I GRCGYC 2 cut(s) 105, 243
Hin1II CATG 9 cut(s) 104, 148, 323, 338, 407, 434, 554, 587, 630
HinfI GANTC 2 cut(s) 400, 646
HphI GGTGA 3 cut(s) 172, 356, 449
Hpy166II GTNNAC 2 cut(s) 581, 617
Hpy188III TCNNGA 2 cut(s) 413, 551
Hpy8I GTNNAC 2 cut(s) 581, 617
Hpy99I CGWCG 4 cut(s) 188, 212, 239, 248
HpyAV CCTTC 4 cut(s) 106, 196, 233, 263
HpyCH4III ACNGT 3 cut(s) 184, 235, 283
HpyCH4V TGCA 3 cut(s) 334, 363, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 164
HpyF3I CTNAG 4 cut(s) 25, 414, 590, 596
Hsp92I GRCGYC 2 cut(s) 105, 243
Hsp92II CATG 9 cut(s) 104, 148, 323, 338, 407, 434, 554, 587, 630
LguI GCTCTTC 1 cut(s) 529
LmnI GCTCC 4 cut(s) 123, 374, 407, 415
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 350
MaeIII GTNAC 3 cut(s) 247, 344, 437
MboII GAAGA 3 cut(s) 40, 275, 546
MhlI GDGCHC 3 cut(s) 227, 379, 412
MluCI AATT 3 cut(s) 57, 453, 528
MlyI GAGTC 2 cut(s) 394, 640
MnlI CCTC 6 cut(s) 103, 188, 327, 409, 472, 553
Mph1103I ATGCAT 1 cut(s) 365
MseI TTAA 1 cut(s) 509
MslI CAYNNNNRTG 2 cut(s) 333, 435
MspR9I CCNGG 2 cut(s) 312, 443
MvaI CCWGG 2 cut(s) 312, 443
MwoI GCNNNNNNNGC 2 cut(s) 161, 164
NcoI CCATGG 1 cut(s) 100
NlaIII CATG 9 cut(s) 104, 148, 323, 338, 407, 434, 554, 587, 630
NlaIV GGNNCC 1 cut(s) 326
NmuCI GTSAC 2 cut(s) 344, 437
NsiI ATGCAT 1 cut(s) 365
NspI RCATGY 1 cut(s) 630
PagI TCATGA 1 cut(s) 550
PaqCI CACCTGC 1 cut(s) 602
PciSI GCTCTTC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PflMI CCANNNNNTGG 1 cut(s) 512
PkrI GCNGC 7 cut(s) 7, 157, 160, 163, 166, 190, 193
PleI GAGTC 2 cut(s) 394, 640
PpsI GAGTC 2 cut(s) 394, 640
PpuMI RGGWCCY 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 412
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 2 cut(s) 310, 441
PspEI GGTNACC 1 cut(s) 437
PspGI CCWGG 2 cut(s) 310, 441
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 3 cut(s) 272, 314, 515
PspPPI RGGWCCY 1 cut(s) 272
RseI CAYNNNNRTG 2 cut(s) 333, 435
SacI GAGCTC 1 cut(s) 412
SapI GCTCTTC 1 cut(s) 529
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 7 cut(s) 6, 156, 159, 162, 165, 189, 192
Sau96I GGNCC 3 cut(s) 272, 314, 515
SchI GAGTC 2 cut(s) 394, 640
ScrFI CCNGG 2 cut(s) 312, 443
SduI GDGCHC 3 cut(s) 227, 379, 412
SetI ASST 8 cut(s) 120, 254, 274, 313, 412, 444, 570, 616
SfaNI GCATC 1 cut(s) 350
SinI GGWCC 2 cut(s) 272, 515
SmiMI CAYNNNNRTG 2 cut(s) 333, 435
SmlI CTYRAG 3 cut(s) 113, 218, 557
SmoI CTYRAG 3 cut(s) 113, 218, 557
Sse9I AATT 3 cut(s) 57, 453, 528
SsiI CCGC 7 cut(s) 156, 159, 162, 165, 189, 192, 434
SstI GAGCTC 1 cut(s) 412
StyD4I CCNGG 2 cut(s) 310, 441
StyI CCWWGG 3 cut(s) 100, 540, 568
TaaI ACNGT 3 cut(s) 184, 235, 283
TaqI TCGA 1 cut(s) 237
TasI AATT 3 cut(s) 57, 453, 528
TauI GCSGC 6 cut(s) 158, 161, 164, 167, 191, 194
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 2 cut(s) 607, 657
TseFI GTSAC 2 cut(s) 344, 437
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 344, 437
TspDTI ATGAA 5 cut(s) 282, 435, 539, 567, 600
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 2 cut(s) 607, 657
Van91I CCANNNNNTGG 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 272, 515
XagI CCTNNNNNAGG 1 cut(s) 572
XceI RCATGY 1 cut(s) 630
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.