MD11G1148200.v1.1

Destroys radicals which are normally produced within the cells and which are toxic to biological systems

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011700
Physical Location & Seq
Forward (+)
13977625 .. 13981725
4101 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1148200.v1.1.491

Sequence Viewer

Length: 666 bp
ATGCAAGCAGCTTTGGCGATCATGGCAGCTCAGACTGTGATGCTTTCATCCCCCACTCTCTTCTCCCAATTCCAAAACCCTAACCCTCACTCAATTCCTCATTCCTTCTTCCATGGCGTCTCCCTCAAGCTCCCATTCAAATCCCAATCCATGTCTTTCGCCGCCTCCGCGGCCGCCCCTAAGCCTCTCACTGTCGTCGCCGCCACCAAGAAAGCCGTCGCTGTCCTCAAGGGCACTTCCAGTGTCGAAGGAGTCGTCACCTTGAGCCAAGAAAACGATGGTCCTACAACCGTGAATGTTCGTATTACTGGACTTACCCCCGGGCCTCATGGGTTTCACTTACATGAGTATGGTGATACAACAAATGGATGCATATCCACAGGACCACATTTCAATCCTAAACAGTTGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCCGATGGGGTGGCAGAGGCAACAATTGTGGATAACCAGATACCATTAACTGGTCCTAATGCTGTAATTGGAAGAGCACTTGTTGTTCATGAGCTTGAGGATGACCTTGGAAAGGGTGGACACGAACTTAGTCTAAGCACTGGCAATGCAGGTGGAAGATTGGCATGTGGCGTGGTTGGTTTGACACCGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0001101 GO:0003674 GO:0003824 GO:0004784 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008270 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009636 GO:0009642 GO:0009651 GO:0009743 GO:0009744 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010193 GO:0010224 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016209 GO:0016441 GO:0016458 GO:0016491 GO:0016721 GO:0019222 GO:0019430 GO:0031047 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0034644 GO:0035194 GO:0035195 GO:0035690 GO:0040029 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046688 GO:0046872 GO:0046914 GO:0048046 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055114 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071236 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071450 GO:0071451 GO:0071457 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071484 GO:0071493 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:0104004 GO:1901700 GO:1901701 GO:1990748
KEGG Pathways
Metabolic & Signaling
ko04146 ko04213 ko05014 ko05016 ko05020 map04146 map04213 map05014 map05016 map05020
Pfam Domains
Protein Families
Sod_Cu

Protein Analysis

222

Amino Acids

22.7

Weight (kDa)

6.09

Isoelectric Point (pI)

20.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sod_Cu PF00080 82 - 216 2.4e-49 Copper/zinc superoxide dismutase (SODC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011700)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28190
fragaria_vesca FvH4_3g30620 FvH4_3g30620
malus_domestica MD03G1128900.v1.1 MD11G1148200.v1.1
prunus_persica Prupe.6G112800_v2.0.a1
pyrus_communis pycom11g12140
rosa_chinensis RchiOBHm_Chr3g0485841 RchiOBHm_Chr5g0056701
rosa_laevigata RLG00000035122
rosa_multiflora Rmu_co8081082.1_g000001 Rmu_sc0001460.1_g000063
rosa_roxburghii Rroxscaffold_1G00023640
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371800 Rh5BG383700 Rh5CG406700 Rh5DG396700
rosa_wichuraiana Rw5G034880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 611
Acc36I ACCTGC 1 cut(s) 611
AccB7I CCANNNNNTGG 1 cut(s) 521
AccII CGCG 1 cut(s) 170
AciI CCGC 6 cut(s) 162, 168, 170, 174, 201, 443
AcoI YGGCCR 1 cut(s) 171
AcyI GRCGYC 1 cut(s) 117
AdeI CACNNNGTG 1 cut(s) 416
AfiI CCNNNNNNNGG 3 cut(s) 442, 521, 583
AgeI ACCGGT 1 cut(s) 658
AgsI TTSAA 2 cut(s) 139, 394
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 4 cut(s) 11, 29, 130, 565
AluI AGCT 4 cut(s) 11, 29, 130, 565
Alw21I GWGCWC 2 cut(s) 421, 550
Alw26I GTCTC 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 2 cut(s) 171, 323
ApeKI GCWGC 2 cut(s) 8, 26
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AsiGI ACCGGT 1 cut(s) 658
AspS9I GGNCC 4 cut(s) 281, 323, 383, 524
AsuC2I CCSGG 2 cut(s) 321, 322
AsuHPI GGTGA 3 cut(s) 250, 365, 458
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 3 cut(s) 281, 383, 524
AxyI CCTNAGG 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 236
Bbv12I GWGCWC 2 cut(s) 421, 550
BbvI GCAGC 2 cut(s) 20, 38
BccI CCATC 2 cut(s) 272, 470
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 452
BcnI CCSGG 2 cut(s) 321, 322
BcoDI GTCTC 1 cut(s) 124
BfuAI ACCTGC 1 cut(s) 611
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 6 cut(s) 9, 27, 162, 171, 174, 201
BlsI GCNGC 6 cut(s) 10, 28, 163, 172, 175, 202
Bme1390I CCNGG 3 cut(s) 321, 322, 452
Bme18I GGWCC 3 cut(s) 281, 383, 524
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 4 cut(s) 281, 323, 383, 524
BmrFI CCNGG 3 cut(s) 321, 322, 452
BmsI GCATC 2 cut(s) 30, 359
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 4 cut(s) 110, 212, 283, 587
BpuMI CCSGG 2 cut(s) 321, 322
BsaBI GATNNNNATC 1 cut(s) 373
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 6 cut(s) 112, 168, 319, 320, 451, 577
BsaWI WCCGGW 1 cut(s) 658
Bsc4I CCNNNNNNNGG 3 cut(s) 442, 521, 583
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 4 cut(s) 240, 313, 526, 616
Bse21I CCTNAGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 622
Bse8I GATNNNNATC 1 cut(s) 373
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 6 cut(s) 112, 168, 319, 320, 451, 577
BseGI GGATG 4 cut(s) 47, 374, 433, 577
BseJI GATNNNNATC 1 cut(s) 373
BseLI CCNNNNNNNGG 3 cut(s) 442, 521, 583
BseMI GCAATG 1 cut(s) 622
BseMII CTCAG 2 cut(s) 44, 414
BseNI ACTGG 4 cut(s) 240, 313, 526, 616
BseSI GKGCMC 1 cut(s) 236
BseX3I CGGCCG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 20, 38
Bsh1236I CGCG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 173, 325
BshTI ACCGGT 1 cut(s) 658
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 421, 550
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 2 cut(s) 321, 659
BslI CCNNNNNNNGG 3 cut(s) 442, 521, 583
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 2 cut(s) 173, 325
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 3 cut(s) 236, 421, 550
Bsp143I GATC 1 cut(s) 18
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 6 cut(s) 162, 168, 170, 174, 201, 443
BspANI GGCC 2 cut(s) 173, 325
BspCNI CTCAG 2 cut(s) 43, 415
BspFNI CGCG 1 cut(s) 170
BspHI TCATGA 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 611
BspQI GCTCTTC 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 658
BsrI ACTGG 4 cut(s) 240, 313, 526, 616
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 6 cut(s) 112, 168, 319, 320, 451, 577
BssMI GATC 1 cut(s) 18
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 2 cut(s) 112, 577
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 4 cut(s) 37, 193, 292, 405
Bst6I CTCTTC 2 cut(s) 65, 538
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 5 cut(s) 30, 180, 423, 599, 605
BstDSI CCRYGG 2 cut(s) 112, 168
BstEII GGTNACC 1 cut(s) 446
BstENI CCTNNNNNAGG 1 cut(s) 581
BstF5I GGATG 4 cut(s) 47, 374, 433, 577
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 1 cut(s) 18
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 4 cut(s) 14, 23, 167, 170
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 1 cut(s) 639
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 319, 320, 450
BstSLI GKGCMC 1 cut(s) 236
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 20, 38
BstZI CGGCCG 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 2 cut(s) 173, 325
BtgI CCRYGG 2 cut(s) 112, 168
BtsCI GGATG 4 cut(s) 47, 374, 433, 577
BtsIMutI CAGTG 3 cut(s) 189, 247, 609
BveI ACCTGC 1 cut(s) 611
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 559
CciNI GCGGCCGC 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 658
Cfr13I GGNCC 4 cut(s) 281, 323, 383, 524
Cfr42I CCGCGG 1 cut(s) 171
Cfr9I CCCGGG 1 cut(s) 320
CseI GACGC 1 cut(s) 106
CspAI ACCGGT 1 cut(s) 658
CspCI CAANNNNNGTGG 4 cut(s) 480, 515, 604, 639
CviAII CATG 9 cut(s) 22, 113, 151, 329, 344, 413, 440, 560, 636
CviJI RGCY 9 cut(s) 11, 29, 130, 173, 184, 215, 267, 325, 565
CviKI_1 RGCY 9 cut(s) 11, 29, 130, 173, 184, 215, 267, 325, 565
DdeI CTNAG 5 cut(s) 30, 180, 423, 599, 605
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DraIII CACNNNGTG 1 cut(s) 416
EaeI YGGCCR 1 cut(s) 171
EagI CGGCCG 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 65, 538
EarI CTCTTC 2 cut(s) 65, 538
EclXI CGGCCG 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 112, 577
Eco47I GGWCC 3 cut(s) 281, 383, 524
Eco52I CGGCCG 1 cut(s) 171
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 320
Eco91I GGTNACC 1 cut(s) 446
EcoNI CCTNNNNNAGG 1 cut(s) 581
EcoO65I GGTNACC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 450
EcoT14I CCWWGG 2 cut(s) 112, 577
EcoT22I ATGCAT 1 cut(s) 374
ErhI CCWWGG 2 cut(s) 112, 577
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 9 cut(s) 25, 116, 154, 332, 347, 416, 443, 563, 639
FatI CATG 9 cut(s) 21, 112, 150, 328, 343, 412, 439, 559, 635
FauI CCCGC 1 cut(s) 436
Fnu4HI GCNGC 6 cut(s) 9, 27, 162, 171, 174, 201
FokI GGATG 4 cut(s) 34, 381, 440, 584
Fsp4HI GCNGC 6 cut(s) 9, 27, 162, 171, 174, 201
GluI GCNGC 6 cut(s) 9, 27, 162, 171, 174, 201
HaeIII GGCC 2 cut(s) 173, 325
HapII CCGG 2 cut(s) 321, 659
HgaI GACGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 9 cut(s) 25, 116, 154, 332, 347, 416, 443, 563, 639
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HinfI GANTC 1 cut(s) 252
HpaII CCGG 2 cut(s) 321, 659
HphI GGTGA 3 cut(s) 250, 365, 458
Hpy166II GTNNAC 2 cut(s) 408, 590
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 422, 560
Hpy8I GTNNAC 2 cut(s) 408, 590
Hpy99I CGWCG 2 cut(s) 200, 221
HpyAV CCTTC 2 cut(s) 115, 242
HpyCH4III ACNGT 4 cut(s) 37, 193, 292, 405
HpyCH4V TGCA 3 cut(s) 4, 372, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 23, 167, 170
HpyF3I CTNAG 5 cut(s) 30, 180, 423, 599, 605
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 9 cut(s) 25, 116, 154, 332, 347, 416, 443, 563, 639
KspI CCGCGG 1 cut(s) 171
Kzo9I GATC 1 cut(s) 18
LguI GCTCTTC 1 cut(s) 538
LmnI GCTCC 2 cut(s) 135, 424
Lsp1109I GCAGC 2 cut(s) 20, 38
LweI GCATC 2 cut(s) 30, 359
MaeIII GTNAC 2 cut(s) 256, 446
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 4 cut(s) 52, 100, 555, 639
MfeI CAATTG 1 cut(s) 495
MhlI GDGCHC 3 cut(s) 236, 421, 550
MluCI AATT 4 cut(s) 68, 93, 495, 537
MlyI GAGTC 1 cut(s) 261
Mph1103I ATGCAT 1 cut(s) 374
MseI TTAA 1 cut(s) 518
MslI CAYNNNNRTG 3 cut(s) 342, 348, 444
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 2 cut(s) 321, 659
MspR9I CCNGG 3 cut(s) 321, 322, 452
MunI CAATTG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 452
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 4 cut(s) 14, 23, 167, 170
NciI CCSGG 2 cut(s) 321, 322
NcoI CCATGG 1 cut(s) 112
NdeII GATC 1 cut(s) 18
NlaIII CATG 9 cut(s) 25, 116, 154, 332, 347, 416, 443, 563, 639
NmuCI GTSAC 2 cut(s) 256, 446
NotI GCGGCCGC 1 cut(s) 171
NsiI ATGCAT 1 cut(s) 374
NspI RCATGY 1 cut(s) 639
PagI TCATGA 1 cut(s) 559
PaqCI CACCTGC 1 cut(s) 611
PciSI GCTCTTC 1 cut(s) 538
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PflMI CCANNNNNTGG 1 cut(s) 521
PinAI ACCGGT 1 cut(s) 658
PkrI GCNGC 6 cut(s) 10, 28, 163, 172, 175, 202
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 450
PspEI GGTNACC 1 cut(s) 446
PspGI CCWGG 1 cut(s) 450
PspPI GGNCC 4 cut(s) 281, 323, 383, 524
RseI CAYNNNNRTG 3 cut(s) 342, 348, 444
SacII CCGCGG 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 538
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 6 cut(s) 9, 27, 162, 171, 174, 201
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 4 cut(s) 281, 323, 383, 524
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 3 cut(s) 321, 322, 452
SduI GDGCHC 3 cut(s) 236, 421, 550
SetI ASST 8 cut(s) 13, 31, 132, 263, 453, 567, 579, 625
SfaNI GCATC 2 cut(s) 30, 359
Sfr303I CCGCGG 1 cut(s) 171
SgrAI CRCCGGYG 1 cut(s) 658
SgrBI CCGCGG 1 cut(s) 171
SinI GGWCC 3 cut(s) 281, 383, 524
SmaI CCCGGG 1 cut(s) 322
SmiMI CAYNNNNRTG 3 cut(s) 342, 348, 444
SmlI CTYRAG 4 cut(s) 125, 227, 262, 566
SmoI CTYRAG 4 cut(s) 125, 227, 262, 566
Sse9I AATT 4 cut(s) 68, 93, 495, 537
SsiI CCGC 6 cut(s) 162, 168, 170, 174, 201, 443
StyD4I CCNGG 3 cut(s) 319, 320, 450
StyI CCWWGG 2 cut(s) 112, 577
TaaI ACNGT 4 cut(s) 37, 193, 292, 405
TaqI TCGA 1 cut(s) 246
TasI AATT 4 cut(s) 68, 93, 495, 537
TauI GCSGC 4 cut(s) 164, 173, 176, 203
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 3 cut(s) 196, 247, 616
TseFI GTSAC 2 cut(s) 256, 446
TseI GCWGC 2 cut(s) 8, 26
Tsp45I GTSAC 2 cut(s) 256, 446
TspDTI ATGAA 3 cut(s) 36, 444, 548
TspGWI ACGGA 1 cut(s) 425
TspMI CCCGGG 1 cut(s) 320
TspRI CASTG 3 cut(s) 196, 247, 616
Van91I CCANNNNNTGG 1 cut(s) 521
VpaK11BI GGWCC 3 cut(s) 281, 383, 524
XagI CCTNNNNNAGG 1 cut(s) 581
XceI RCATGY 1 cut(s) 639
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XmaI CCCGGG 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.