AT2G28440

Vegetative cell wall protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013018
Physical Location & Seq
Forward (+)
12160977 .. 12162032
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28440.1

Sequence Viewer

Length: 807 bp
ATGGCGAAAAAGCTCTGTTTCATTGTTATGCTATCAATATGTCTCCTAATTTTTGACTTTGCGGGTGCTCAGGAGGAATCTCCTTCACCTGCTGCTGTCTCGCCAGGACGTGAACCTTCAACGGATTCTCCTTTGTCACCGTCTTCATCACCGGAAGAAGATTCTCCTTTGTCACCGTCTTCATCACCGGAAGAAGATTCTCCTCTCCCACCATCTTCATCACCGGAAGAAGATTCTCCTCTGGCACCGTCTTCATCACCGGAAGTAGATTCTCCTCTGGCACCGTCTTCTTCACCAGAAGTAGATTCCCCTCAGCCACCGTCTTCTTCACCAGAAGCAGATTCTCCTCTGCCACCGTCTTCTTCACCAGAAGCGAATTCCCCTCAGTCACCGGCTTCATCACCGAAACCTGAATCCCTAGCGGATTCTCCTTCACCACCCCCACCTCCTCCTCAGCCGGAATCTCCTTCTTCTCCATCATATCCTGAACCAGCACCTGTTCCTGCTCCATCTGACGATGATTCGGATGATGATCCCGAGCCAGAGACCGAATATTTCCCTTCTCCGGCGCCATCTCCGGAATTGGGAATGGCACAAGACATCAAAGCAAGTGATGCTGCCGGCGAAGAACTCAATGACGAAAGAGGTGAAGATTATGGAATGAGTGGATTGGAGAAAGCCGGAATAGCCATTGGAACGATACTCGGAGTAGGAGCTATTGTAATCGGAGCTCTTGTTTACAAGAAACGAAGAGATAACATGACCAGAGCTCGTTACACTTACTTTACTGAAGGAGAGTTCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

27.74

Weight (kDa)

4.05

Isoelectric Point (pI)

131.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28440 AT3G45230 AT5G60630
fragaria_vesca FvH4_3g32420
prunus_persica Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis pycom11g11220
rosa_chinensis RchiOBHm_Chr5g0059401
rosa_laevigata RLG00000033252
rosa_multiflora Rmu_sc0004458.1_g000004
rosa_roxburghii Rroxscaffold_1G00021080
rosa_rugosa Rorug05G0322700
rosa_samantha Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana Rw5G036430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 97
Acc36I ACCTGC 1 cut(s) 97
AccB1I GGYRCC 3 cut(s) 244, 280, 568
AccIII TCCGGA 1 cut(s) 577
AciI CCGC 2 cut(s) 62, 422
AclWI GGATC 1 cut(s) 527
AcsI RAATTY 1 cut(s) 376
AcyI GRCGYC 1 cut(s) 569
AfiI CCNNNNNNNGG 2 cut(s) 565, 584
AgsI TTSAA 1 cut(s) 120
AjiI CACGTC 1 cut(s) 110
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 4 cut(s) 13, 716, 731, 770
AluI AGCT 4 cut(s) 13, 716, 731, 770
Alw21I GWGCWC 3 cut(s) 70, 733, 772
Alw26I GTCTC 3 cut(s) 47, 103, 539
AlwI GGATC 1 cut(s) 527
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 536
Aor13HI TCCGGA 1 cut(s) 577
ApeKI GCWGC 2 cut(s) 92, 617
ApoI RAATTY 1 cut(s) 376
AspLEI GCGC 1 cut(s) 571
AvaI CYCGRG 1 cut(s) 536
BanI GGYRCC 3 cut(s) 244, 280, 568
BanII GRGCYC 2 cut(s) 733, 772
BbsI GAAGAC 6 cut(s) 135, 171, 243, 279, 315, 351
Bbv12I GWGCWC 3 cut(s) 70, 733, 772
BbvCI CCTCAGC 2 cut(s) 312, 453
BbvI GCAGC 2 cut(s) 79, 604
BccI CCATC 4 cut(s) 220, 484, 517, 580
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 3 cut(s) 47, 103, 539
BfaI CTAG 1 cut(s) 419
BfoI RGCGCY 1 cut(s) 572
BfuAI ACCTGC 1 cut(s) 97
BisI GCNGC 2 cut(s) 93, 618
BlsI GCNGC 2 cut(s) 94, 619
Bme1390I CCNGG 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 536
BmgBI CACGTC 1 cut(s) 110
BmiI GGNNCC 3 cut(s) 246, 282, 570
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 604
BpiI GAAGAC 6 cut(s) 135, 171, 243, 279, 315, 351
Bpu10I CCTNAGC 3 cut(s) 69, 312, 453
BsaBI GATNNNNATC 1 cut(s) 531
BsaHI GRCGYC 1 cut(s) 569
BsaI GGTCTC 1 cut(s) 539
BsaWI WCCGGW 5 cut(s) 151, 187, 223, 259, 577
BsaXI ACNNNNNCTCC 6 cut(s) 112, 142, 705, 720, 735, 750
Bsc4I CCNNNNNNNGG 2 cut(s) 565, 584
Bse118I RCCGGY 2 cut(s) 391, 620
Bse8I GATNNNNATC 1 cut(s) 531
BseAI TCCGGA 1 cut(s) 577
BseBI CCWGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 532
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 565, 584
BseMII CTCAG 4 cut(s) 83, 326, 398, 467
BseRI GAGGAG 6 cut(s) 192, 228, 264, 336, 438, 441
BseXI GCAGC 2 cut(s) 79, 604
BshNI GGYRCC 3 cut(s) 244, 280, 568
BsiHKAI GWGCWC 3 cut(s) 70, 733, 772
BsiHKCI CYCGRG 1 cut(s) 536
BslI CCNNNNNNNGG 2 cut(s) 565, 584
BsmAI GTCTC 3 cut(s) 47, 103, 539
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 536
Bsp1286I GDGCHC 3 cut(s) 70, 733, 772
Bsp13I TCCGGA 1 cut(s) 577
Bsp143I GATC 1 cut(s) 532
BspACI CCGC 2 cut(s) 62, 422
BspCNI CTCAG 4 cut(s) 82, 325, 397, 466
BspEI TCCGGA 1 cut(s) 577
BspLI GGNNCC 3 cut(s) 246, 282, 570
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 1 cut(s) 527
BspT107I GGYRCC 3 cut(s) 244, 280, 568
BspTNI GGTCTC 1 cut(s) 539
BsrFI RCCGGY 2 cut(s) 391, 620
BssAI RCCGGY 2 cut(s) 391, 620
BssMI GATC 1 cut(s) 532
BssNI GRCGYC 1 cut(s) 569
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 6 cut(s) 141, 177, 249, 285, 321, 357
Bst6I CTCTTC 1 cut(s) 745
BstACI GRCGYC 1 cut(s) 569
BstAPI GCANNNNNTGC 1 cut(s) 614
BstC8I GCNNGC 1 cut(s) 622
BstDEI CTNAG 4 cut(s) 69, 312, 384, 453
BstF5I GGATG 1 cut(s) 532
BstH2I RGCGCY 1 cut(s) 572
BstHHI GCGC 1 cut(s) 571
BstKTI GATC 1 cut(s) 535
BstMAI GTCTC 3 cut(s) 47, 103, 539
BstMBI GATC 1 cut(s) 532
BstMWI GCNNNNNNNGC 2 cut(s) 614, 686
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 79, 604
BstV2I GAAGAC 6 cut(s) 135, 171, 243, 279, 315, 351
BtrI CACGTC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 532
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 622
CaiI CAGNNNCTG 1 cut(s) 497
CfoI GCGC 1 cut(s) 571
Cfr10I RCCGGY 2 cut(s) 391, 620
CviAII CATG 1 cut(s) 760
DdeI CTNAG 4 cut(s) 69, 312, 384, 453
DinI GGCGCC 1 cut(s) 570
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 745
EarI CTCTTC 1 cut(s) 745
Ecl136II GAGCTC 2 cut(s) 731, 770
Eco24I GRGCYC 2 cut(s) 733, 772
Eco31I GGTCTC 1 cut(s) 539
Eco53kI GAGCTC 2 cut(s) 731, 770
Eco88I CYCGRG 1 cut(s) 536
EcoICRI GAGCTC 2 cut(s) 731, 770
EcoRI GAATTC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 103
EcoT38I GRGCYC 2 cut(s) 733, 772
EgeI GGCGCC 1 cut(s) 570
EheI GGCGCC 1 cut(s) 570
FaeI CATG 1 cut(s) 763
FaiI YATR 5 cut(s) 29, 40, 481, 657, 761
FatI CATG 1 cut(s) 759
FauI CCCGC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 93, 618
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 2 cut(s) 733, 772
Fsp4HI GCNGC 2 cut(s) 93, 618
FspBI CTAG 1 cut(s) 419
GlaI GCGC 1 cut(s) 570
GluI GCNGC 2 cut(s) 93, 618
HaeII RGCGCY 1 cut(s) 572
HhaI GCGC 1 cut(s) 571
Hin1I GRCGYC 1 cut(s) 569
Hin1II CATG 1 cut(s) 763
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
Hpy166II GTNNAC 2 cut(s) 113, 739
Hpy188I TCNGA 4 cut(s) 514, 526, 707, 728
Hpy188III TCNNGA 4 cut(s) 71, 485, 536, 578
Hpy8I GTNNAC 2 cut(s) 113, 739
HpyAV CCTTC 6 cut(s) 93, 126, 441, 477, 570, 785
HpyCH4III ACNGT 6 cut(s) 141, 177, 249, 285, 321, 357
HpyCH4IV ACGT 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 2 cut(s) 614, 686
HpyF3I CTNAG 4 cut(s) 69, 312, 384, 453
HpySE526I ACGT 1 cut(s) 109
Hsp92I GRCGYC 1 cut(s) 569
Hsp92II CATG 1 cut(s) 763
HspAI GCGC 1 cut(s) 569
KasI GGCGCC 1 cut(s) 568
Kpn2I TCCGGA 1 cut(s) 577
KroI GCCGGC 1 cut(s) 620
KroNI GCCGGC 1 cut(s) 622
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 3 cut(s) 511, 713, 728
Lsp1109I GCAGC 2 cut(s) 79, 604
LweI GCATC 1 cut(s) 604
MaeI CTAG 1 cut(s) 419
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 4 cut(s) 135, 171, 387, 773
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MhlI GDGCHC 3 cut(s) 70, 733, 772
MluCI AATT 3 cut(s) 48, 376, 581
Mly113I GGCGCC 1 cut(s) 569
MroI TCCGGA 1 cut(s) 577
MroNI GCCGGC 1 cut(s) 620
MseI TTAA 1 cut(s) 805
MslI CAYNNNNRTG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 105
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 614, 686
NaeI GCCGGC 1 cut(s) 622
NarI GGCGCC 1 cut(s) 569
NdeII GATC 1 cut(s) 532
NgoMIV GCCGGC 1 cut(s) 620
NlaIII CATG 1 cut(s) 763
NlaIV GGNNCC 3 cut(s) 246, 282, 570
NmuCI GTSAC 3 cut(s) 135, 171, 387
PaqCI CACCTGC 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 622
PkrI GCNGC 2 cut(s) 94, 619
PluTI GGCGCC 1 cut(s) 572
Psp124BI GAGCTC 2 cut(s) 733, 772
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 3 cut(s) 246, 282, 570
PstNI CAGNNNCTG 1 cut(s) 497
RseI CAYNNNNRTG 1 cut(s) 26
SacI GAGCTC 2 cut(s) 733, 772
SaqAI TTAA 1 cut(s) 805
SatI GCNGC 2 cut(s) 93, 618
Sau3AI GATC 1 cut(s) 532
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 3 cut(s) 70, 733, 772
SfaNI GCATC 1 cut(s) 604
SfoI GGCGCC 1 cut(s) 570
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 3 cut(s) 48, 376, 581
SsiI CCGC 2 cut(s) 62, 422
SspDI GGCGCC 1 cut(s) 568
SspI AATATT 1 cut(s) 554
SspMI CTAG 1 cut(s) 419
SstI GAGCTC 2 cut(s) 733, 772
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 6 cut(s) 141, 177, 249, 285, 321, 357
TaiI ACGT 1 cut(s) 112
TaqII GACCGA 1 cut(s) 563
TasI AATT 3 cut(s) 48, 376, 581
Tru1I TTAA 1 cut(s) 805
Tru9I TTAA 1 cut(s) 805
TseFI GTSAC 3 cut(s) 135, 171, 387
TseI GCWGC 2 cut(s) 92, 617
Tsp45I GTSAC 3 cut(s) 135, 171, 387
TspDTI ATGAA 6 cut(s) 10, 135, 171, 207, 243, 387
TspGWI ACGGA 1 cut(s) 137
XapI RAATTY 1 cut(s) 376
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.