Rroxscaffold_1G00021080

Classical arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013018
Physical Location & Seq
Reverse (-)
25792254 .. 25793765
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021080.1

Sequence Viewer

Length: 498 bp
ATGGCCAGCCTCCTCCACTTCTTCCTCCTCGCCTTCCTCCTACTCCAATTCACTGCTTCTTCATCTTCACCAACTCCATCTCCCCAGCCAGATTCCGATTCCCCATCTCCCTCCTCCGACTCACCTTCACCCTCCAATGCCCCGCAGATTTCACTACCTCCGTCTCCCTCCGACGCTCCGGCGAACTCCCCGAATTCCGCTTCACCTCCTGCCCCGCCGACCTCCGATTCTCCCTCGCCGCTCCCGGATTCCGCTTCCGATGCTCCCGCGCCGGCGCCAGGTGCCAGCGACGTCAACCACAGCGATATCAACACTGACGGAGGACCTAAAACGGCGTCGTCCGACGGAGGGATGAGTGCGGGGAAGAAAGCCGGGATCGGACTCGGAGTCATCGTCGGAGTTGGGTTGGTCGGACTCGGAGCTTTTGTTTACAAGAGGCGCCAGGATAACGTTCGCAGATCTCAGTACGGTTACGCCGCCCGGAGAGAGATGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

16.6

Weight (kDa)

5.08

Isoelectric Point (pI)

99.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28440 AT3G45230 AT5G60630
fragaria_vesca FvH4_3g32420
prunus_persica Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis pycom11g11220
rosa_chinensis RchiOBHm_Chr5g0059401
rosa_laevigata RLG00000033252
rosa_multiflora Rmu_sc0004458.1_g000004
rosa_roxburghii Rroxscaffold_1G00021080
rosa_rugosa Rorug05G0322700
rosa_samantha Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana Rw5G036430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
AccB1I GGYRCC 3 cut(s) 274, 281, 438
AccBSI CCGCTC 1 cut(s) 241
AccII CGCG 1 cut(s) 269
AciI CCGC 8 cut(s) 143, 198, 215, 239, 252, 267, 359, 477
AclI AACGTT 1 cut(s) 450
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 193
AcyI GRCGYC 4 cut(s) 275, 291, 335, 439
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 2 cut(s) 278, 348
AhdI GACNNNNNGTC 1 cut(s) 386
AjnI CCWGG 2 cut(s) 277, 441
AluBI AGCT 1 cut(s) 422
AluI AGCT 1 cut(s) 422
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 383
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 193
AspLEI GCGC 3 cut(s) 271, 277, 441
AspS9I GGNCC 1 cut(s) 323
AsuC2I CCSGG 3 cut(s) 245, 373, 481
AsuHPI GGTGA 4 cut(s) 60, 114, 120, 195
AvaII GGWCC 1 cut(s) 323
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 3 cut(s) 274, 281, 438
BccI CCATC 2 cut(s) 85, 112
BceAI ACGGC 1 cut(s) 348
BciT130I CCWGG 2 cut(s) 279, 443
BcnI CCSGG 3 cut(s) 245, 373, 481
BcoDI GTCTC 1 cut(s) 168
BfoI RGCGCY 2 cut(s) 278, 442
BglII AGATCT 1 cut(s) 458
BisI GCNGC 2 cut(s) 239, 477
BlsI GCNGC 2 cut(s) 240, 478
Bme1390I CCNGG 5 cut(s) 245, 279, 373, 443, 481
Bme18I GGWCC 1 cut(s) 323
BmeRI GACNNNNNGTC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 3 cut(s) 276, 283, 440
BmrFI CCNGG 5 cut(s) 245, 279, 373, 443, 481
BmsI GCATC 2 cut(s) 250, 480
BplI GAGNNNNNCTC 1 cut(s) 477
BpuMI CCSGG 3 cut(s) 245, 373, 481
BsaHI GRCGYC 4 cut(s) 275, 291, 335, 439
BsaXI ACNNNNNCTCC 6 cut(s) 64, 94, 378, 408, 411, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 348
Bse118I RCCGGY 1 cut(s) 271
BseBI CCWGG 2 cut(s) 279, 443
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 278, 348
BseMII CTCAG 1 cut(s) 476
BseRI GAGGAG 2 cut(s) 17, 103
BseYI CCCAGC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 3 cut(s) 274, 281, 438
BsiSI CCGG 5 cut(s) 179, 245, 272, 372, 481
BslI CCNNNNNNNGG 2 cut(s) 278, 348
BsmAI GTCTC 1 cut(s) 168
BsmBI CGTCTC 1 cut(s) 168
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 375, 458
BspACI CCGC 8 cut(s) 143, 198, 215, 239, 252, 267, 359, 477
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 475
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 3 cut(s) 276, 283, 440
BspPI GGATC 1 cut(s) 383
BspT107I GGYRCC 3 cut(s) 274, 281, 438
BsrBI CCGCTC 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssMI GATC 2 cut(s) 375, 458
BssNI GRCGYC 4 cut(s) 275, 291, 335, 439
Bst2UI CCWGG 2 cut(s) 279, 443
Bst4CI ACNGT 1 cut(s) 470
BstACI GRCGYC 4 cut(s) 275, 291, 335, 439
BstC8I GCNNGC 3 cut(s) 7, 273, 286
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 1 cut(s) 357
BstFNI CGCG 1 cut(s) 269
BstH2I RGCGCY 2 cut(s) 278, 442
BstHHI GCGC 3 cut(s) 271, 277, 441
BstKTI GATC 2 cut(s) 378, 461
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 375, 458
BstMWI GCNNNNNNNGC 2 cut(s) 260, 281
BstNI CCWGG 2 cut(s) 279, 443
BstSCI CCNGG 5 cut(s) 243, 277, 371, 441, 479
BstUI CGCG 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 357
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 51, 312
Cac8I GCNNGC 3 cut(s) 7, 273, 286
CfoI GCGC 3 cut(s) 271, 277, 441
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 2 cut(s) 182, 324
Csp6I GTAC 1 cut(s) 466
CviJI RGCY 5 cut(s) 5, 9, 88, 371, 422
CviKI_1 RGCY 5 cut(s) 5, 9, 88, 371, 422
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 1 cut(s) 462
DinI GGCGCC 2 cut(s) 276, 440
DpnI GATC 2 cut(s) 377, 460
DpnII GATC 2 cut(s) 375, 458
DriI GACNNNNNGTC 1 cut(s) 386
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 386
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 277, 441
EcoRV GATATC 1 cut(s) 307
EgeI GGCGCC 2 cut(s) 276, 440
EheI GGCGCC 2 cut(s) 276, 440
Esp3I CGTCTC 1 cut(s) 168
FauI CCCGC 4 cut(s) 150, 222, 274, 352
Fnu4HI GCNGC 2 cut(s) 239, 477
FokI GGATG 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 239, 477
GlaI GCGC 3 cut(s) 270, 276, 440
GluI GCNGC 2 cut(s) 239, 477
GsaI CCCAGC 1 cut(s) 88
HaeII RGCGCY 2 cut(s) 278, 442
HaeIII GGCC 1 cut(s) 5
HapII CCGG 5 cut(s) 179, 245, 272, 372, 481
HgaI GACGC 2 cut(s) 182, 324
HhaI GCGC 3 cut(s) 271, 277, 441
Hin1I GRCGYC 4 cut(s) 275, 291, 335, 439
Hin6I GCGC 3 cut(s) 269, 275, 439
HinP1I GCGC 3 cut(s) 269, 275, 439
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 8 cut(s) 92, 98, 119, 227, 248, 381, 387, 414
HpaII CCGG 5 cut(s) 179, 245, 272, 372, 481
HphI GGTGA 4 cut(s) 60, 114, 120, 195
Hpy166II GTNNAC 2 cut(s) 295, 430
Hpy8I GTNNAC 2 cut(s) 295, 430
Hpy99I CGWCG 5 cut(s) 176, 293, 340, 347, 398
HpyAV CCTTC 2 cut(s) 43, 135
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 2 cut(s) 291, 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 281
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 2 cut(s) 291, 450
Hsp92I GRCGYC 4 cut(s) 275, 291, 335, 439
HspAI GCGC 3 cut(s) 269, 275, 439
KasI GGCGCC 2 cut(s) 274, 438
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Kzo9I GATC 2 cut(s) 375, 458
LmnI GCTCC 4 cut(s) 181, 246, 268, 419
LweI GCATC 2 cut(s) 250, 480
MaeII ACGT 2 cut(s) 291, 450
MaeIII GTNAC 1 cut(s) 470
MalI GATC 2 cut(s) 377, 460
MbiI CCGCTC 1 cut(s) 241
MboI GATC 2 cut(s) 375, 458
MboII GAAGA 4 cut(s) 13, 51, 57, 376
MflI RGATCY 1 cut(s) 458
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 47, 193
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 2 cut(s) 275, 439
MlyI GAGTC 4 cut(s) 113, 375, 396, 408
MmeI TCCRAC 5 cut(s) 141, 195, 366, 376, 391
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 271
MroNI GCCGGC 1 cut(s) 271
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 5 cut(s) 179, 245, 272, 372, 481
MspR9I CCNGG 5 cut(s) 245, 279, 373, 443, 481
MvaI CCWGG 2 cut(s) 279, 443
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 260, 281
NaeI GCCGGC 1 cut(s) 273
NarI GGCGCC 2 cut(s) 275, 439
NciI CCSGG 3 cut(s) 245, 373, 481
NdeII GATC 2 cut(s) 375, 458
NgoMIV GCCGGC 1 cut(s) 271
NlaIV GGNNCC 3 cut(s) 276, 283, 440
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdiI GCCGGC 1 cut(s) 273
PfeI GAWTC 4 cut(s) 92, 98, 227, 248
PfoI TCCNGGA 1 cut(s) 243
PkrI GCNGC 2 cut(s) 240, 478
PleI GAGTC 4 cut(s) 113, 375, 395, 408
PluTI GGCGCC 2 cut(s) 278, 442
PpsI GAGTC 4 cut(s) 113, 375, 395, 408
PpuMI RGGWCCY 1 cut(s) 323
Psp1406I AACGTT 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 277, 441
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 2 cut(s) 277, 441
PspN4I GGNNCC 3 cut(s) 276, 283, 440
PspPI GGNCC 1 cut(s) 323
PspPPI RGGWCCY 1 cut(s) 323
PsuI RGATCY 1 cut(s) 458
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
SatI GCNGC 2 cut(s) 239, 477
Sau3AI GATC 2 cut(s) 375, 458
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 4 cut(s) 113, 375, 396, 408
ScrFI CCNGG 5 cut(s) 245, 279, 373, 443, 481
SetI ASST 9 cut(s) 127, 160, 208, 224, 283, 294, 328, 424, 453
SfaNI GCATC 2 cut(s) 250, 480
SfoI GGCGCC 2 cut(s) 276, 440
SgrAI CRCCGGYG 1 cut(s) 271
SinI GGWCC 1 cut(s) 323
Sse9I AATT 2 cut(s) 47, 193
SsiI CCGC 8 cut(s) 143, 198, 215, 239, 252, 267, 359, 477
SspDI GGCGCC 2 cut(s) 274, 438
StyD4I CCNGG 5 cut(s) 243, 277, 371, 441, 479
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 2 cut(s) 294, 453
TasI AATT 2 cut(s) 47, 193
TauI GCSGC 2 cut(s) 241, 479
TfiI GAWTC 4 cut(s) 92, 98, 227, 248
TscAI CASTG 2 cut(s) 58, 319
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 3 cut(s) 150, 333, 360
TspRI CASTG 2 cut(s) 58, 319
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 1 cut(s) 193
ZraI GACGTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.