Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004458.1

Orthogroup ID

OG0013018

Physical Location & Seq

Genomic Coordinates Reverse (-)

12085 .. 12675

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004458.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggccactctaattcatgcagggttgtattctcttctagttttagctctctacaccaactttgtaaaccctttctaccaagttagtggatccacggcagcagtcccggcagcacccccggcagcaccacctgcagcacccccggcagcacccccagcagcaccccccgcagcaccaccagcagcaccaccggcagcacccccggcagcacccccagcagcacccccagcagcaccaccggcagcaccccccgcagcaccaccggcagcaccacctgcatcaccccccgcagcacccccggcagcaccaccggcagcaccccccgcagcacccccggcagcaccaccagcagcacccccaacagcacccccaacacctaagttaccgccgccacatgacataacacctccaggaggaccaccacagaaaaaagggtctaaaggactgagtggtggacagaaggcggggatagttttcggagtgctaatcggggtagggctgctcggttttggcgcatttgtgtacaagaaacgtagtgataacgtgagaagagaaagatatggagttgcagccaggagaacctccctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

18.83

Weight (kDa)

10.45

Isoelectric Point (pI)

90.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28440 AT3G45230 AT5G60630
fragaria_vesca	FvH4_3g32420
prunus_persica	Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis	pycom11g11220
rosa_chinensis	RchiOBHm_Chr5g0059401
rosa_laevigata	RLG00000033252
rosa_multiflora	Rmu_sc0004458.1_g000004
rosa_roxburghii	Rroxscaffold_1G00021080
rosa_rugosa	Rorug05G0322700
rosa_samantha	Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana	Rw5G036430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	139, 283
Acc36I	ACCTGC	2 cut(s)	139, 283
AciI	CCGC	7 cut(s)	168, 252, 288, 324, 386, 389, 464
AclWI	GGATC	2 cut(s)	84, 97
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	413
AjnI	CCWGG	2 cut(s)	409, 572
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
AlwI	GGATC	2 cut(s)	84, 97
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	416
AsuC2I	CCSGG	6 cut(s)	107, 119, 143, 203, 299, 335
AsuHPI	GGTGA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	2 cut(s)	411, 574
BcnI	CCSGG	6 cut(s)	107, 119, 143, 203, 299, 335
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	132
BfuAI	ACCTGC	2 cut(s)	139, 283
Bme1390I	CCNGG	8 cut(s)	107, 119, 143, 203, 299, 335, 411, 574
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	8 cut(s)	107, 119, 143, 203, 299, 335, 411, 574
BmsI	GCATC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	393
BpuMI	CCSGG	6 cut(s)	107, 119, 143, 203, 299, 335
BsaJI	CCNNGG	6 cut(s)	93, 117, 141, 201, 297, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse118I	RCCGGY	4 cut(s)	190, 238, 262, 310
BseBI	CCWGG	2 cut(s)	411, 574
BseDI	CCNNGG	6 cut(s)	93, 117, 141, 201, 297, 333
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	1 cut(s)	437
BseYI	CCCAGC	3 cut(s)	154, 214, 226
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	7 cut(s)	168, 252, 288, 324, 386, 389, 464
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	2 cut(s)	139, 283
BspPI	GGATC	2 cut(s)	84, 97
BsrFI	RCCGGY	4 cut(s)	190, 238, 262, 310
BsrGI	TGTACA	1 cut(s)	522
BssAI	RCCGGY	4 cut(s)	190, 238, 262, 310
BssECI	CCNNGG	6 cut(s)	93, 117, 141, 201, 297, 333
BssMI	GATC	1 cut(s)	89
Bst2UI	CCWGG	2 cut(s)	411, 574
Bst6I	CTCTTC	2 cut(s)	39, 544
BstAPI	GCANNNNNTGC	2 cut(s)	131, 275
BstAUI	TGTACA	1 cut(s)	522
BstDEI	CTNAG	2 cut(s)	378, 446
BstDSI	CCRYGG	1 cut(s)	93
BstENI	CCTNNNNNAGG	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	515
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstNI	CCWGG	2 cut(s)	411, 574
BstSCI	CCNGG	8 cut(s)	105, 117, 141, 201, 297, 333, 409, 572
BstSFI	CTRYAG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	93
BveI	ACCTGC	2 cut(s)	139, 283
CfoI	GCGC	1 cut(s)	515
Cfr10I	RCCGGY	4 cut(s)	190, 238, 262, 310
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	2 cut(s)	17, 395
CviJI	RGCY	4 cut(s)	5, 47, 499, 572
CviKI_1	RGCY	4 cut(s)	5, 47, 499, 572
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	2 cut(s)	378, 446
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	39, 544
EarI	CTCTTC	2 cut(s)	39, 544
Eco47I	GGWCC	1 cut(s)	416
EcoNI	CCTNNNNNAGG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	409, 572
FaeI	CATG	2 cut(s)	20, 398
FaiI	YATR	4 cut(s)	18, 396, 401, 561
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	16, 394
FauI	CCCGC	5 cut(s)	175, 259, 295, 331, 457
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	514
GsaI	CCCAGC	3 cut(s)	158, 218, 230
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	515
Hin1II	CATG	2 cut(s)	20, 398
Hin6I	GCGC	1 cut(s)	513
HinP1I	GCGC	1 cut(s)	513
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	3 cut(s)	67, 455, 523
Hpy188I	TCNGA	1 cut(s)	479
Hpy8I	GTNNAC	3 cut(s)	67, 455, 523
HpyAV	CCTTC	1 cut(s)	454
HpyCH4IV	ACGT	2 cut(s)	532, 543
HpyCH4V	TGCA	4 cut(s)	20, 134, 278, 569
HpyF3I	CTNAG	2 cut(s)	378, 446
HpySE526I	ACGT	2 cut(s)	532, 543
Hsp92II	CATG	2 cut(s)	20, 398
HspAI	GCGC	1 cut(s)	513
Kzo9I	GATC	1 cut(s)	89
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	2 cut(s)	532, 543
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	2 cut(s)	26, 561
MflI	RGATCY	1 cut(s)	89
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	12
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	407, 417
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	8 cut(s)	107, 119, 143, 203, 299, 335, 411, 574
MvaI	CCWGG	2 cut(s)	411, 574
NciI	CCSGG	6 cut(s)	107, 119, 143, 203, 299, 335
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	20, 398
NlaIV	GGNNCC	1 cut(s)	91
PaqCI	CACCTGC	2 cut(s)	139, 283
PfoI	TCCNGGA	1 cut(s)	409
Psp6I	CCWGG	2 cut(s)	409, 572
PspFI	CCCAGC	3 cut(s)	154, 214, 226
PspGI	CCWGG	2 cut(s)	409, 572
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	416
ScrFI	CCNGG	8 cut(s)	107, 119, 143, 203, 299, 335, 411, 574
SetI	ASST	8 cut(s)	49, 133, 277, 379, 409, 535, 546, 584
SfaNI	GCATC	1 cut(s)	287
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	416
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	7 cut(s)	168, 252, 288, 324, 386, 389, 464
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	8 cut(s)	105, 117, 141, 201, 297, 333, 409, 572
TaiI	ACGT	2 cut(s)	535, 546
TasI	AATT	1 cut(s)	12
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	5
VpaK11BI	GGWCC	1 cut(s)	416
XagI	CCTNNNNNAGG	1 cut(s)	411
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.