Rh5BG398500

Classical arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0013018
Physical Location & Seq
Forward (+)
64669209 .. 64669969
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG398500.1

Sequence Viewer

Length: 477 bp
ATGGCGAGCCTCCTCCACTTCTTCCTCCTGGCCTTCCTCCTTCTCCAACTCACTGCTTCTTCATCTTCACCAACTCCATCTCCCCAGCCAGATTCCGATTCACCGTCTCCCTCCTCCGATTCACCCTCACCCTCCAATGCCCCGCAGATTTCAGTACCTCCGTCTCCCTCTGACTCTCCGGCGAACTCGCCGAATTCCGCTTCACCTCCTGCCCCGCCGACCTCCGATTCTCCCTCGCCGCTCCCGGATTCCGCTTCGGATGCTCCCGCGCCGGCGCCAGGTGCCAGCGACGTCAACCACAGCGATATCAACTCTGGCGGAGGACCTAAAACGGCGTCGTCCGACGGAGGGATGAGTGCGGGGAAGAAGGCCGGGATCGGACTCGGAGTCATCGTCGGGGTTGGGTTGGTCGGACTCGGAGCGGTTGTGTACAAGAGGCGCCAGGATAACATTCGCAGATCTCAGTACGTACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

15.64

Weight (kDa)

4.98

Isoelectric Point (pI)

106.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28440 AT3G45230 AT5G60630
fragaria_vesca FvH4_3g32420
prunus_persica Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis pycom11g11220
rosa_chinensis RchiOBHm_Chr5g0059401
rosa_laevigata RLG00000033252
rosa_multiflora Rmu_sc0004458.1_g000004
rosa_roxburghii Rroxscaffold_1G00021080
rosa_rugosa Rorug05G0322700
rosa_samantha Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana Rw5G036430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
AccB1I GGYRCC 3 cut(s) 274, 281, 438
AccBSI CCGCTC 2 cut(s) 241, 422
AccII CGCG 1 cut(s) 269
AciI CCGC 9 cut(s) 143, 198, 215, 239, 252, 267, 318, 359, 422
AclWI GGATC 1 cut(s) 383
AcsI RAATTY 1 cut(s) 193
AcyI GRCGYC 4 cut(s) 275, 291, 335, 439
AfaI GTAC 4 cut(s) 156, 431, 467, 471
AfiI CCNNNNNNNGG 2 cut(s) 278, 348
AhdI GACNNNNNGTC 1 cut(s) 386
AjnI CCWGG 3 cut(s) 27, 277, 441
Alw26I GTCTC 2 cut(s) 111, 168
AlwI GGATC 1 cut(s) 383
AoxI GGCC 2 cut(s) 30, 369
ApoI RAATTY 1 cut(s) 193
AspLEI GCGC 3 cut(s) 271, 277, 441
AspS9I GGNCC 1 cut(s) 323
AsuC2I CCSGG 2 cut(s) 245, 373
AsuHPI GGTGA 5 cut(s) 60, 93, 114, 120, 195
AvaII GGWCC 1 cut(s) 323
BanI GGYRCC 3 cut(s) 274, 281, 438
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 348
BciT130I CCWGG 3 cut(s) 29, 279, 443
BcnI CCSGG 2 cut(s) 245, 373
BcoDI GTCTC 2 cut(s) 111, 168
BfoI RGCGCY 2 cut(s) 278, 442
BglII AGATCT 1 cut(s) 458
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
Bme1390I CCNGG 5 cut(s) 29, 245, 279, 373, 443
Bme18I GGWCC 1 cut(s) 323
BmeRI GACNNNNNGTC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 323
BmiI GGNNCC 3 cut(s) 276, 283, 440
BmrFI CCNGG 5 cut(s) 29, 245, 279, 373, 443
BmsI GCATC 1 cut(s) 250
BpuMI CCSGG 2 cut(s) 245, 373
BsaAI YACGTR 1 cut(s) 469
BsaHI GRCGYC 4 cut(s) 275, 291, 335, 439
BsaXI ACNNNNNCTCC 6 cut(s) 64, 94, 378, 408, 411, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 348
Bse118I RCCGGY 1 cut(s) 271
BseBI CCWGG 3 cut(s) 29, 279, 443
BseGI GGATG 2 cut(s) 265, 357
BseLI CCNNNNNNNGG 2 cut(s) 278, 348
BseMII CTCAG 1 cut(s) 476
BseRI GAGGAG 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 2 cut(s) 32, 371
BshNI GGYRCC 3 cut(s) 274, 281, 438
BsiSI CCGG 4 cut(s) 179, 245, 272, 372
BslI CCNNNNNNNGG 2 cut(s) 278, 348
BsmAI GTCTC 2 cut(s) 111, 168
BsmBI CGTCTC 2 cut(s) 111, 168
BsnI GGCC 2 cut(s) 32, 371
Bsp1407I TGTACA 1 cut(s) 429
Bsp143I GATC 2 cut(s) 375, 458
BspACI CCGC 9 cut(s) 143, 198, 215, 239, 252, 267, 318, 359, 422
BspANI GGCC 2 cut(s) 32, 371
BspCNI CTCAG 1 cut(s) 475
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 3 cut(s) 276, 283, 440
BspPI GGATC 1 cut(s) 383
BspT107I GGYRCC 3 cut(s) 274, 281, 438
BsrBI CCGCTC 2 cut(s) 241, 422
BsrFI RCCGGY 1 cut(s) 271
BsrGI TGTACA 1 cut(s) 429
BssAI RCCGGY 1 cut(s) 271
BssMI GATC 2 cut(s) 375, 458
BssNI GRCGYC 4 cut(s) 275, 291, 335, 439
Bst2UI CCWGG 3 cut(s) 29, 279, 443
Bst4CI ACNGT 1 cut(s) 105
BstACI GRCGYC 4 cut(s) 275, 291, 335, 439
BstAUI TGTACA 1 cut(s) 429
BstBAI YACGTR 1 cut(s) 469
BstC8I GCNNGC 3 cut(s) 7, 273, 286
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 265, 357
BstFNI CGCG 1 cut(s) 269
BstH2I RGCGCY 2 cut(s) 278, 442
BstHHI GCGC 3 cut(s) 271, 277, 441
BstKTI GATC 2 cut(s) 378, 461
BstMAI GTCTC 2 cut(s) 111, 168
BstMBI GATC 2 cut(s) 375, 458
BstMWI GCNNNNNNNGC 2 cut(s) 260, 281
BstNI CCWGG 3 cut(s) 29, 279, 443
BstSCI CCNGG 5 cut(s) 27, 243, 277, 371, 441
BstSNI TACGTA 1 cut(s) 469
BstUI CGCG 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 2 cut(s) 32, 371
BtsCI GGATG 2 cut(s) 265, 357
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 3 cut(s) 7, 273, 286
CfoI GCGC 3 cut(s) 271, 277, 441
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 323
CseI GACGC 1 cut(s) 324
Csp6I GTAC 4 cut(s) 155, 430, 466, 470
CviJI RGCY 4 cut(s) 9, 32, 88, 371
CviKI_1 RGCY 4 cut(s) 9, 32, 88, 371
CviQI GTAC 4 cut(s) 155, 430, 466, 470
DdeI CTNAG 1 cut(s) 462
DinI GGCGCC 2 cut(s) 276, 440
DpnI GATC 2 cut(s) 377, 460
DpnII GATC 2 cut(s) 375, 458
DriI GACNNNNNGTC 1 cut(s) 386
Eam1105I GACNNNNNGTC 1 cut(s) 386
EciI GGCGGA 1 cut(s) 333
Eco105I TACGTA 1 cut(s) 469
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 3 cut(s) 27, 277, 441
EcoRV GATATC 1 cut(s) 307
EgeI GGCGCC 2 cut(s) 276, 440
EheI GGCGCC 2 cut(s) 276, 440
Esp3I CGTCTC 2 cut(s) 111, 168
FauI CCCGC 4 cut(s) 150, 222, 274, 352
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 2 cut(s) 272, 364
Fsp4HI GCNGC 1 cut(s) 239
GlaI GCGC 3 cut(s) 270, 276, 440
GluI GCNGC 1 cut(s) 239
GsaI CCCAGC 1 cut(s) 88
HaeII RGCGCY 2 cut(s) 278, 442
HaeIII GGCC 2 cut(s) 32, 371
HapII CCGG 4 cut(s) 179, 245, 272, 372
HgaI GACGC 1 cut(s) 324
HhaI GCGC 3 cut(s) 271, 277, 441
Hin1I GRCGYC 4 cut(s) 275, 291, 335, 439
Hin6I GCGC 3 cut(s) 269, 275, 439
HinP1I GCGC 3 cut(s) 269, 275, 439
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 9 cut(s) 92, 98, 119, 173, 227, 248, 381, 387, 414
HpaII CCGG 4 cut(s) 179, 245, 272, 372
HphI GGTGA 5 cut(s) 60, 93, 114, 120, 195
Hpy166II GTNNAC 2 cut(s) 295, 430
Hpy8I GTNNAC 2 cut(s) 295, 430
Hpy99I CGWCG 4 cut(s) 293, 340, 347, 398
HpyAV CCTTC 3 cut(s) 43, 50, 361
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4IV ACGT 2 cut(s) 291, 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 281
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 2 cut(s) 291, 468
Hsp92I GRCGYC 4 cut(s) 275, 291, 335, 439
HspAI GCGC 3 cut(s) 269, 275, 439
KasI GGCGCC 2 cut(s) 274, 438
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Kzo9I GATC 2 cut(s) 375, 458
LmnI GCTCC 3 cut(s) 246, 268, 419
LweI GCATC 1 cut(s) 250
MaeII ACGT 2 cut(s) 291, 468
MalI GATC 2 cut(s) 377, 460
MbiI CCGCTC 2 cut(s) 241, 422
MboI GATC 2 cut(s) 375, 458
MboII GAAGA 4 cut(s) 13, 51, 57, 376
MflI RGATCY 1 cut(s) 458
MluCI AATT 1 cut(s) 193
Mly113I GGCGCC 2 cut(s) 275, 439
MlyI GAGTC 4 cut(s) 167, 375, 396, 408
MmeI TCCRAC 3 cut(s) 70, 366, 391
MreI CGCCGGCG 1 cut(s) 271
MroNI GCCGGC 1 cut(s) 271
MspI CCGG 4 cut(s) 179, 245, 272, 372
MspR9I CCNGG 5 cut(s) 29, 245, 279, 373, 443
MvaI CCWGG 3 cut(s) 29, 279, 443
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 260, 281
NaeI GCCGGC 1 cut(s) 273
NarI GGCGCC 2 cut(s) 275, 439
NciI CCSGG 2 cut(s) 245, 373
NdeII GATC 2 cut(s) 375, 458
NgoMIV GCCGGC 1 cut(s) 271
NlaIV GGNNCC 3 cut(s) 276, 283, 440
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdiI GCCGGC 1 cut(s) 273
PfeI GAWTC 5 cut(s) 92, 98, 119, 227, 248
PfoI TCCNGGA 1 cut(s) 243
PkrI GCNGC 1 cut(s) 240
PleI GAGTC 4 cut(s) 167, 375, 395, 408
PluTI GGCGCC 2 cut(s) 278, 442
PpsI GAGTC 4 cut(s) 167, 375, 395, 408
Ppu21I YACGTR 1 cut(s) 469
PpuMI RGGWCCY 1 cut(s) 323
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 3 cut(s) 27, 277, 441
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 3 cut(s) 27, 277, 441
PspN4I GGNNCC 3 cut(s) 276, 283, 440
PspPI GGNCC 1 cut(s) 323
PspPPI RGGWCCY 1 cut(s) 323
PsuI RGATCY 1 cut(s) 458
RsaI GTAC 4 cut(s) 156, 431, 467, 471
RsaNI GTAC 4 cut(s) 155, 430, 466, 470
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 2 cut(s) 375, 458
Sau96I GGNCC 1 cut(s) 323
SchI GAGTC 4 cut(s) 167, 375, 396, 408
ScrFI CCNGG 5 cut(s) 29, 245, 279, 373, 443
SetI ASST 7 cut(s) 160, 208, 224, 283, 294, 328, 471
SfaNI GCATC 1 cut(s) 250
SfoI GGCGCC 2 cut(s) 276, 440
SgrAI CRCCGGYG 1 cut(s) 271
SinI GGWCC 1 cut(s) 323
SnaBI TACGTA 1 cut(s) 469
Sse9I AATT 1 cut(s) 193
SsiI CCGC 9 cut(s) 143, 198, 215, 239, 252, 267, 318, 359, 422
SspDI GGCGCC 2 cut(s) 274, 438
StyD4I CCNGG 5 cut(s) 27, 243, 277, 371, 441
TaaI ACNGT 1 cut(s) 105
TaiI ACGT 2 cut(s) 294, 471
TasI AATT 1 cut(s) 193
TatI WGTACW 1 cut(s) 429
TauI GCSGC 1 cut(s) 241
TfiI GAWTC 5 cut(s) 92, 98, 119, 227, 248
TscAI CASTG 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 2 cut(s) 150, 360
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 1 cut(s) 193
ZraI GACGTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.