Rh5AG387200

Classical arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013018
Physical Location & Seq
Forward (+)
66987135 .. 66997577
10443 bp
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UTR
Exon/CDS
Intron
Rh5AG387200.1

Sequence Viewer

Length: 468 bp
ATGGCGAGCCTCCTCCACTTCTTCCTCCTCGCCTTCCTCCTACTCCAACTCACTGCTTCTTCATCTTCACCAACTCCATCTCCTCAGCCAGATTCCGATTCACCTTCACCCTCCAATGCCCCGCAGATTTCACTACCTCCGTCTCCCTCCGACGCTCCGGCGAACTCGCCGAATTCCGCTTCACCTCCTGCCCCGCCGACCTCCGATTCTCCCTCGCCGCTCCCGGATTCCGCTTCCGATGCTCCCGCGCCGGCGCCAGGTGCCAGCGACGTCAACCACAGCGATATCAACTCTGAAGGAGGACCTAAAACGGCGTCGTCCGACGGAGGGATGAGTGCGGGGAAGAAGGCCGGGATCGGACTCGGAGTCATCGTCGGGGTTGGGTTGGTCGGACTCGGAGCGGTTGTGTACAAGAGGCGCCAGGATAACATTCGCAGATCTCAAATTTCAAGGGCATTAGTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

15.43

Weight (kDa)

5.45

Isoelectric Point (pI)

97.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28440 AT3G45230 AT5G60630
fragaria_vesca FvH4_3g32420
prunus_persica Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis pycom11g11220
rosa_chinensis RchiOBHm_Chr5g0059401
rosa_laevigata RLG00000033252
rosa_multiflora Rmu_sc0004458.1_g000004
rosa_roxburghii Rroxscaffold_1G00021080
rosa_rugosa Rorug05G0322700
rosa_samantha Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana Rw5G036430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
AccB1I GGYRCC 3 cut(s) 253, 260, 417
AccBSI CCGCTC 2 cut(s) 220, 401
AccII CGCG 1 cut(s) 248
AciI CCGC 8 cut(s) 122, 177, 194, 218, 231, 246, 338, 401
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 2 cut(s) 172, 444
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 4 cut(s) 254, 270, 314, 418
AfaI GTAC 2 cut(s) 410, 462
AfiI CCNNNNNNNGG 2 cut(s) 257, 327
AgsI TTSAA 1 cut(s) 450
AhdI GACNNNNNGTC 1 cut(s) 365
AjnI CCWGG 2 cut(s) 256, 420
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 362
AoxI GGCC 1 cut(s) 348
ApoI RAATTY 2 cut(s) 172, 444
AspLEI GCGC 3 cut(s) 250, 256, 420
AspS9I GGNCC 1 cut(s) 302
AsuC2I CCSGG 2 cut(s) 224, 352
AsuHPI GGTGA 4 cut(s) 60, 93, 99, 174
AvaII GGWCC 1 cut(s) 302
BanI GGYRCC 3 cut(s) 253, 260, 417
BbvCI CCTCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 85
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 2 cut(s) 258, 422
BcnI CCSGG 2 cut(s) 224, 352
BcoDI GTCTC 1 cut(s) 147
BfoI RGCGCY 2 cut(s) 257, 421
BglII AGATCT 1 cut(s) 437
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
Bme1390I CCNGG 4 cut(s) 224, 258, 352, 422
Bme18I GGWCC 1 cut(s) 302
BmeRI GACNNNNNGTC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 3 cut(s) 255, 262, 419
BmrFI CCNGG 4 cut(s) 224, 258, 352, 422
BmsI GCATC 1 cut(s) 229
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 2 cut(s) 224, 352
BsaHI GRCGYC 4 cut(s) 254, 270, 314, 418
BsaXI ACNNNNNCTCC 6 cut(s) 64, 94, 357, 387, 390, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 327
Bse118I RCCGGY 1 cut(s) 250
BseBI CCWGG 2 cut(s) 258, 422
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 2 cut(s) 257, 327
BseMII CTCAG 1 cut(s) 98
BseRI GAGGAG 2 cut(s) 17, 72
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 3 cut(s) 253, 260, 417
BsiSI CCGG 4 cut(s) 158, 224, 251, 351
BslI CCNNNNNNNGG 2 cut(s) 257, 327
BsmAI GTCTC 1 cut(s) 147
BsmBI CGTCTC 1 cut(s) 147
BsnI GGCC 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 2 cut(s) 354, 437
BspACI CCGC 8 cut(s) 122, 177, 194, 218, 231, 246, 338, 401
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 3 cut(s) 255, 262, 419
BspPI GGATC 1 cut(s) 362
BspT107I GGYRCC 3 cut(s) 253, 260, 417
BsrBI CCGCTC 2 cut(s) 220, 401
BsrFI RCCGGY 1 cut(s) 250
BsrGI TGTACA 1 cut(s) 408
BssAI RCCGGY 1 cut(s) 250
BssMI GATC 2 cut(s) 354, 437
BssNI GRCGYC 4 cut(s) 254, 270, 314, 418
Bst2UI CCWGG 2 cut(s) 258, 422
Bst4CI ACNGT 1 cut(s) 465
BstACI GRCGYC 4 cut(s) 254, 270, 314, 418
BstAUI TGTACA 1 cut(s) 408
BstC8I GCNNGC 3 cut(s) 7, 252, 265
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 336
BstFNI CGCG 1 cut(s) 248
BstH2I RGCGCY 2 cut(s) 257, 421
BstHHI GCGC 3 cut(s) 250, 256, 420
BstKTI GATC 2 cut(s) 357, 440
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 2 cut(s) 354, 437
BstMWI GCNNNNNNNGC 2 cut(s) 239, 260
BstNI CCWGG 2 cut(s) 258, 422
BstSCI CCNGG 4 cut(s) 222, 256, 350, 420
BstUI CGCG 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuRI GGCC 1 cut(s) 350
BtsCI GGATG 1 cut(s) 336
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 3 cut(s) 7, 252, 265
CfoI GCGC 3 cut(s) 250, 256, 420
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 302
CseI GACGC 2 cut(s) 161, 303
Csp6I GTAC 2 cut(s) 409, 461
CviJI RGCY 3 cut(s) 9, 88, 350
CviKI_1 RGCY 3 cut(s) 9, 88, 350
CviQI GTAC 2 cut(s) 409, 461
DdeI CTNAG 1 cut(s) 84
DinI GGCGCC 2 cut(s) 255, 419
DpnI GATC 2 cut(s) 356, 439
DpnII GATC 2 cut(s) 354, 437
DriI GACNNNNNGTC 1 cut(s) 365
Eam1105I GACNNNNNGTC 1 cut(s) 365
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 256, 420
EcoRV GATATC 1 cut(s) 286
EgeI GGCGCC 2 cut(s) 255, 419
EheI GGCGCC 2 cut(s) 255, 419
Esp3I CGTCTC 1 cut(s) 147
FauI CCCGC 4 cut(s) 129, 201, 253, 331
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 218
GlaI GCGC 3 cut(s) 249, 255, 419
GluI GCNGC 1 cut(s) 218
HaeII RGCGCY 2 cut(s) 257, 421
HaeIII GGCC 1 cut(s) 350
HapII CCGG 4 cut(s) 158, 224, 251, 351
HgaI GACGC 2 cut(s) 161, 303
HhaI GCGC 3 cut(s) 250, 256, 420
Hin1I GRCGYC 4 cut(s) 254, 270, 314, 418
Hin6I GCGC 3 cut(s) 248, 254, 418
HinP1I GCGC 3 cut(s) 248, 254, 418
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 7 cut(s) 92, 98, 206, 227, 360, 366, 393
HpaII CCGG 4 cut(s) 158, 224, 251, 351
HphI GGTGA 4 cut(s) 60, 93, 99, 174
Hpy166II GTNNAC 2 cut(s) 274, 409
Hpy8I GTNNAC 2 cut(s) 274, 409
Hpy99I CGWCG 5 cut(s) 155, 272, 319, 326, 377
HpyAV CCTTC 4 cut(s) 43, 114, 290, 340
HpyCH4III ACNGT 1 cut(s) 465
HpyCH4IV ACGT 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 260
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 4 cut(s) 254, 270, 314, 418
HspAI GCGC 3 cut(s) 248, 254, 418
KasI GGCGCC 2 cut(s) 253, 417
KroI GCCGGC 1 cut(s) 250
KroNI GCCGGC 1 cut(s) 252
Kzo9I GATC 2 cut(s) 354, 437
LmnI GCTCC 4 cut(s) 160, 225, 247, 398
LweI GCATC 1 cut(s) 229
MaeII ACGT 1 cut(s) 270
MalI GATC 2 cut(s) 356, 439
MbiI CCGCTC 2 cut(s) 220, 401
MboI GATC 2 cut(s) 354, 437
MboII GAAGA 4 cut(s) 13, 51, 57, 355
MflI RGATCY 1 cut(s) 437
MluCI AATT 2 cut(s) 172, 444
Mly113I GGCGCC 2 cut(s) 254, 418
MlyI GAGTC 3 cut(s) 354, 375, 387
MmeI TCCRAC 4 cut(s) 70, 174, 345, 370
MreI CGCCGGCG 1 cut(s) 250
MroNI GCCGGC 1 cut(s) 250
MspI CCGG 4 cut(s) 158, 224, 251, 351
MspR9I CCNGG 4 cut(s) 224, 258, 352, 422
MvaI CCWGG 2 cut(s) 258, 422
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 239, 260
NaeI GCCGGC 1 cut(s) 252
NarI GGCGCC 2 cut(s) 254, 418
NciI CCSGG 2 cut(s) 224, 352
NdeII GATC 2 cut(s) 354, 437
NgoMIV GCCGGC 1 cut(s) 250
NlaIV GGNNCC 3 cut(s) 255, 262, 419
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PdiI GCCGGC 1 cut(s) 252
PfeI GAWTC 4 cut(s) 92, 98, 206, 227
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 1 cut(s) 219
PleI GAGTC 3 cut(s) 354, 374, 387
PluTI GGCGCC 2 cut(s) 257, 421
PpsI GAGTC 3 cut(s) 354, 374, 387
PpuMI RGGWCCY 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 2 cut(s) 256, 420
PspGI CCWGG 2 cut(s) 256, 420
PspN4I GGNNCC 3 cut(s) 255, 262, 419
PspPI GGNCC 1 cut(s) 302
PspPPI RGGWCCY 1 cut(s) 302
PsuI RGATCY 1 cut(s) 437
RsaI GTAC 2 cut(s) 410, 462
RsaNI GTAC 2 cut(s) 409, 461
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 2 cut(s) 354, 437
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 3 cut(s) 354, 375, 387
ScrFI CCNGG 4 cut(s) 224, 258, 352, 422
SetI ASST 7 cut(s) 106, 139, 187, 203, 262, 273, 307
SfaNI GCATC 1 cut(s) 229
SfoI GGCGCC 2 cut(s) 255, 419
SgrAI CRCCGGYG 1 cut(s) 250
SinI GGWCC 1 cut(s) 302
Sse9I AATT 2 cut(s) 172, 444
SsiI CCGC 8 cut(s) 122, 177, 194, 218, 231, 246, 338, 401
SspDI GGCGCC 2 cut(s) 253, 417
StyD4I CCNGG 4 cut(s) 222, 256, 350, 420
TaaI ACNGT 1 cut(s) 465
TaiI ACGT 1 cut(s) 273
TasI AATT 2 cut(s) 172, 444
TatI WGTACW 2 cut(s) 408, 460
TauI GCSGC 1 cut(s) 220
TfiI GAWTC 4 cut(s) 92, 98, 206, 227
TscAI CASTG 1 cut(s) 58
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 2 cut(s) 129, 339
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 2 cut(s) 172, 444
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.