AT3G45230

Vegetative cell wall protein gp1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013018
Physical Location & Seq
Forward (+)
16569051 .. 16569860
810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45230.1

Sequence Viewer

Length: 528 bp
ATGAAGCTCGAATTCATTATTGTTGCTATGATGCTAAGTCTCGTACTCGTCTCCGGTGAGATTTTAACTAAATCCTCACCGGCTCCGTCACCGGATCTAGCAGATTCGCCTTTAATCCACGCATCACCACCATCGAAACTCGGATCTCATAATTCTCCAGCGGAATCTCCAATTGAATACTCTTCTCCTCCAGAGCCTGAAACAGAACACTCTCCATCTCCTTCTCCGGCGAATTCTCCATCGGTTTCTCCACCATTACCGAATGATTCTCAATCTCCTTCTTCGTCTGCTTCTCCGTCTCCGTCACCGGAAGCTAGCGATGTGAATCACAGTGATATTACTGGGATCGAAGGGGAGAAGTTGCCGTCGGGAAGCGGTGGAGGAATGAGCGGCGGGAAGAAAGTTGGAGTTGCTTTTGGAGCGATTGCGGCGGTTTGTGTGGTTGGAGTCGCCGGATTTGTGTACAAGAAACGGCAAGAGAATATTCGCAGGTCTCGTTACGGTTACGCCGCCAGAGAGATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

17.94

Weight (kDa)

5.53

Isoelectric Point (pI)

107.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28440 AT3G45230 AT5G60630
fragaria_vesca FvH4_3g32420
prunus_persica Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis pycom11g11220
rosa_chinensis RchiOBHm_Chr5g0059401
rosa_laevigata RLG00000033252
rosa_multiflora Rmu_sc0004458.1_g000004
rosa_roxburghii Rroxscaffold_1G00021080
rosa_rugosa Rorug05G0322700
rosa_samantha Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana Rw5G036430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 480
AccBSI CCGCTC 1 cut(s) 390
AciI CCGC 7 cut(s) 161, 375, 390, 393, 428, 431, 510
AclWI GGATC 3 cut(s) 102, 151, 353
AcsI RAATTY 2 cut(s) 11, 232
AfaI GTAC 2 cut(s) 45, 464
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 2 cut(s) 7, 314
AluI AGCT 2 cut(s) 7, 314
Alw26I GTCTC 4 cut(s) 44, 55, 303, 498
AlwI GGATC 3 cut(s) 102, 151, 353
AlwNI CAGNNNCTG 1 cut(s) 197
ApoI RAATTY 2 cut(s) 11, 232
AsuHPI GGTGA 5 cut(s) 68, 69, 81, 117, 297
AsuNHI GCTAGC 1 cut(s) 314
BccI CCATC 3 cut(s) 139, 223, 247
BceAI ACGGC 2 cut(s) 349, 488
BcoDI GTCTC 4 cut(s) 44, 55, 303, 498
BfaI CTAG 2 cut(s) 98, 315
BfuAI ACCTGC 1 cut(s) 480
BisI GCNGC 3 cut(s) 391, 429, 510
BlsI GCNGC 3 cut(s) 392, 430, 511
BmiI GGNNCC 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 351
BmsI GCATC 2 cut(s) 21, 131
BmtI GCTAGC 1 cut(s) 318
BmuI ACTGGG 1 cut(s) 351
BpmI CTGGAG 2 cut(s) 141, 174
BsaBI GATNNNNATC 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 498
BsaWI WCCGGW 3 cut(s) 53, 91, 307
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 346
Bse8I GATNNNNATC 1 cut(s) 324
BseJI GATNNNNATC 1 cut(s) 324
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 177
BsiSI CCGG 6 cut(s) 54, 80, 92, 227, 308, 453
BsmAI GTCTC 4 cut(s) 44, 55, 303, 498
BsmBI CGTCTC 2 cut(s) 55, 303
Bso31I GGTCTC 1 cut(s) 498
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 3 cut(s) 94, 143, 345
BspACI CCGC 7 cut(s) 161, 375, 390, 393, 428, 431, 510
BspLI GGNNCC 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 480
BspOI GCTAGC 1 cut(s) 318
BspPI GGATC 3 cut(s) 102, 151, 353
BspTNI GGTCTC 1 cut(s) 498
BsrBI CCGCTC 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 79
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 79
BssMI GATC 3 cut(s) 94, 143, 345
Bst4CI ACNGT 2 cut(s) 332, 503
Bst6I CTCTTC 1 cut(s) 187
BstAUI TGTACA 1 cut(s) 462
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 35
BstKTI GATC 3 cut(s) 97, 146, 348
BstMAI GTCTC 4 cut(s) 44, 55, 303, 498
BstMBI GATC 3 cut(s) 94, 143, 345
BstMWI GCNNNNNNNGC 2 cut(s) 419, 428
BstX2I RGATCY 2 cut(s) 94, 143
BstYI RGATCY 2 cut(s) 94, 143
BtgZI GCGATG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 337
BveI ACCTGC 1 cut(s) 480
Cac8I GCNNGC 1 cut(s) 316
CaiI CAGNNNCTG 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 79
Csp6I GTAC 2 cut(s) 44, 463
CviJI RGCY 4 cut(s) 7, 83, 196, 314
CviKI_1 RGCY 4 cut(s) 7, 83, 196, 314
CviQI GTAC 2 cut(s) 44, 463
DdeI CTNAG 1 cut(s) 35
DpnI GATC 3 cut(s) 96, 145, 347
DpnII GATC 3 cut(s) 94, 143, 345
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 498
EcoRI GAATTC 2 cut(s) 11, 232
Esp3I CGTCTC 2 cut(s) 55, 303
FaiI YATR 2 cut(s) 29, 150
FauI CCCGC 1 cut(s) 386
Fnu4HI GCNGC 3 cut(s) 391, 429, 510
Fsp4HI GCNGC 3 cut(s) 391, 429, 510
FspBI CTAG 2 cut(s) 98, 315
GluI GCNGC 3 cut(s) 391, 429, 510
GsuI CTGGAG 2 cut(s) 141, 174
HapII CCGG 6 cut(s) 54, 80, 92, 227, 308, 453
HinfI GANTC 6 cut(s) 104, 164, 266, 325, 447, 520
HpaII CCGG 6 cut(s) 54, 80, 92, 227, 308, 453
HphI GGTGA 5 cut(s) 68, 69, 81, 117, 297
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 2 cut(s) 191, 369
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 3 cut(s) 231, 288, 344
HpyCH4III ACNGT 2 cut(s) 332, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 428
HpyF3I CTNAG 1 cut(s) 35
Kzo9I GATC 3 cut(s) 94, 143, 345
LmnI GCTCC 2 cut(s) 88, 419
LweI GCATC 2 cut(s) 21, 131
MaeI CTAG 2 cut(s) 98, 315
MaeIII GTNAC 4 cut(s) 87, 303, 497, 503
MalI GATC 3 cut(s) 96, 145, 347
MbiI CCGCTC 1 cut(s) 390
MboI GATC 3 cut(s) 94, 143, 345
MboII GAAGA 3 cut(s) 174, 273, 409
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 2 cut(s) 94, 143
MluCI AATT 4 cut(s) 11, 151, 171, 232
MlyI GAGTC 1 cut(s) 456
MmeI TCCRAC 2 cut(s) 385, 424
MnlI CCTC 3 cut(s) 85, 198, 374
MseI TTAA 2 cut(s) 65, 113
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 6 cut(s) 54, 80, 92, 227, 308, 453
MunI CAATTG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 419, 428
NdeII GATC 3 cut(s) 94, 143, 345
NheI GCTAGC 1 cut(s) 314
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 2 cut(s) 87, 303
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PfeI GAWTC 5 cut(s) 104, 164, 266, 325, 520
PkrI GCNGC 3 cut(s) 392, 430, 511
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PspN4I GGNNCC 1 cut(s) 84
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 2 cut(s) 94, 143
RsaI GTAC 2 cut(s) 45, 464
RsaNI GTAC 2 cut(s) 44, 463
SaqAI TTAA 2 cut(s) 65, 113
SatI GCNGC 3 cut(s) 391, 429, 510
Sau3AI GATC 3 cut(s) 94, 143, 345
SchI GAGTC 1 cut(s) 456
SetI ASST 3 cut(s) 9, 316, 494
SfaNI GCATC 2 cut(s) 21, 131
Sse9I AATT 4 cut(s) 11, 151, 171, 232
SsiI CCGC 7 cut(s) 161, 375, 390, 393, 428, 431, 510
SspI AATATT 1 cut(s) 484
SspMI CTAG 2 cut(s) 98, 315
TaaI ACNGT 2 cut(s) 332, 503
TaqI TCGA 3 cut(s) 9, 134, 348
TasI AATT 4 cut(s) 11, 151, 171, 232
TatI WGTACW 1 cut(s) 462
TauI GCSGC 3 cut(s) 393, 431, 512
TfiI GAWTC 5 cut(s) 104, 164, 266, 325, 520
Tru1I TTAA 2 cut(s) 65, 113
Tru9I TTAA 2 cut(s) 65, 113
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 2 cut(s) 87, 303
Tsp45I GTSAC 2 cut(s) 87, 303
TspDTI ATGAA 2 cut(s) 4, 17
TspGWI ACGGA 3 cut(s) 75, 285, 291
TspRI CASTG 1 cut(s) 337
XapI RAATTY 2 cut(s) 11, 232
XspI CTAG 2 cut(s) 98, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.