Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0013018

Physical Location & Seq

Genomic Coordinates Forward (+)

17667264 .. 17700981

Gene Structure 33718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG137900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAGCATATTATACACTATCGGGGTCTTCAGGCTCATAGTCGATACGCTAAACATTTTGCCCCATTAAGATATAGCATAAAGAGACTGGAGAGACTAGAAGATCTTATATTCTACAACGACATCAACCTAAGCAATGGCATCCGGACAAGGGATTTGGTGATAGACTTGCTGGCGCTGCTACCAGTGTGTTCTCCTGCAAACTTGATTTGGCGCAAGCTTTTGGTAGCTGTAAGCCATCTGGTCTATCTCGGGAAGAAATTTAAGAGAGTGATAGTTCACCCCGCACCTCAGCCTGTTGATTTCTTGAGGAACATTGACATACCTGAAACAAAAATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

13.31

Weight (kDa)

10.06

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28440 AT3G45230 AT5G60630
fragaria_vesca	FvH4_3g32420
prunus_persica	Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis	pycom11g11220
rosa_chinensis	RchiOBHm_Chr5g0059401
rosa_laevigata	RLG00000033252
rosa_multiflora	Rmu_sc0004458.1_g000004
rosa_roxburghii	Rroxscaffold_1G00021080
rosa_rugosa	Rorug05G0322700
rosa_samantha	Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana	Rw5G036430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	144
AciI	CCGC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	151
AluBI	AGCT	2 cut(s)	220, 230
AluI	AGCT	2 cut(s)	220, 230
Alw26I	GTCTC	2 cut(s)	79, 88
Ama87I	CYCGRG	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	260
ArsI	GACNNNNNNTTYG	2 cut(s)	139, 171
AspLEI	GCGC	2 cut(s)	178, 216
AsuHPI	GGTGA	2 cut(s)	172, 272
AvaI	CYCGRG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	1 cut(s)	246
BcoDI	GTCTC	2 cut(s)	79, 88
BfaI	CTAG	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	179
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	110
Bpu10I	CCTNAGC	2 cut(s)	131, 291
BpuEI	CTTGAG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	93, 185
Bse3DI	GCAATG	1 cut(s)	142
BseAI	TCCGGA	1 cut(s)	144
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	2 cut(s)	93, 185
BseXI	GCAGC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	2 cut(s)	79, 88
BsoBI	CYCGRG	1 cut(s)	251
Bsp13I	TCCGGA	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	304
BspEI	TCCGGA	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	93, 185
BssMI	GATC	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	174, 218
BstDEI	CTNAG	2 cut(s)	131, 291
BstF5I	GGATG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	2 cut(s)	178, 216
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	2 cut(s)	79, 88
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	174, 218
CfoI	GCGC	2 cut(s)	178, 216
CviAII	CATG	1 cut(s)	342
CviJI	RGCY	5 cut(s)	35, 220, 230, 237, 295
CviKI_1	RGCY	5 cut(s)	35, 220, 230, 237, 295
DdeI	CTNAG	2 cut(s)	131, 291
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco57I	CTGAAG	1 cut(s)	14
Eco88I	CYCGRG	1 cut(s)	251
FaeI	CATG	1 cut(s)	345
FaiI	YATR	8 cut(s)	9, 14, 39, 75, 80, 110, 323, 343
FatI	CATG	1 cut(s)	341
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	1 cut(s)	98
GlaI	GCGC	2 cut(s)	177, 215
GluI	GCNGC	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	179
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	2 cut(s)	178, 216
Hin1II	CATG	1 cut(s)	345
Hin6I	GCGC	2 cut(s)	176, 214
HinP1I	GCGC	2 cut(s)	176, 214
HindIII	AAGCTT	1 cut(s)	218
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	2 cut(s)	172, 272
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188III	TCNNGA	3 cut(s)	145, 253, 307
Hpy8I	GTNNAC	1 cut(s)	280
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	2 cut(s)	131, 291
Hsp92II	CATG	1 cut(s)	345
HspAI	GCGC	2 cut(s)	176, 214
Kpn2I	TCCGGA	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	9 cut(s)	17, 74, 158, 158, 198, 210, 227, 309, 339
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	98
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	3 cut(s)	20, 113, 268
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	2 cut(s)	300, 303
MroI	TCCGGA	1 cut(s)	144
MseI	TTAA	2 cut(s)	68, 264
MspI	CCGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	178
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	345
PkrI	GCNGC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	68, 264
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	1 cut(s)	103
SetI	ASST	5 cut(s)	132, 222, 232, 292, 328
SfaNI	GCATC	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	1 cut(s)	98
TaqI	TCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	68, 264
Tru9I	TTAA	2 cut(s)	68, 264
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	192
XapI	RAATTY	1 cut(s)	260
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.