Rorug05G0322700

Classical arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013018
Physical Location & Seq
Reverse (-)
38616008 .. 38619654
3647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0322700.1

Sequence Viewer

Length: 744 bp
ATGGAGCAAGCTCGCAGCACAATCGGAAAACCAGTGAAGACGAAGTTCGAAGACCCCGAATCATCACCTTCCTCTTCTTCCGAAGATGAAGAGGAGGAGGAGGAGATAGAGGAGGAGCTTGCAGATGTGACATTCGGGGACTTGCAGAGGGCGCGCTCCAATGGGTCGCATGTAGTGTTGCCGAAGCCCAAAGAAGAGAAGAAGGGTGGCCGAGCAAACAAGAACCGGCCAATGGAGGTGAGCTGCAAGAAGCCTGTCAGTAGATTTAGAGAGGTCATTCAAGCTCCGAAAAAGGTGGTACGTGATCCGCGTTTTGAATCTTTATGTGGAACTCTGAATGTTGATGGGTTTAGGAAGAGATATGATTTTTTGTTTTCAAACGAGCTTCCTGCTGAAAAGCAGGATCTAAAGAAACAATTGAACAAATCGAAGGATCCAGAAGTCATTGAAGATCTAAAGCAGCGCATATCTTGGATTGATAAACAGCTAAAATCTGATTCATCTAAGCGCACTGAAGCTGAAATTCTAGCTGAGCACAAGAAAAAAGAGAGAGAAAAAGCAAAGCAAGGAAAACAACCCTTCTTTATCAAGAAATCTGAGATCCGAAAGAAACGACTTGTTGAAAAGTACAAAAATCTCAAGGGATCTGGCAAGCTTGAAGCCTTCTTGGAGCAAAGGCGAAAGAAGAATGCTACAAAGGACCACAGATACATGCCGTACCGTAGACCTGACAACATTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

28.86

Weight (kDa)

9.56

Isoelectric Point (pI)

74.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP36 PF06102 71 - 236 2e-53 rRNA biogenesis protein RRP36
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28440 AT3G45230 AT5G60630
fragaria_vesca FvH4_3g32420
prunus_persica Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis pycom11g11220
rosa_chinensis RchiOBHm_Chr5g0059401
rosa_laevigata RLG00000033252
rosa_multiflora Rmu_sc0004458.1_g000004
rosa_roxburghii Rroxscaffold_1G00021080
rosa_rugosa Rorug05G0322700
rosa_samantha Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana Rw5G036430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 724
AccII CGCG 2 cut(s) 154, 310
AciI CCGC 1 cut(s) 308
AclWI GGATC 6 cut(s) 299, 411, 428, 441, 595, 652
AcoI YGGCCR 2 cut(s) 208, 227
AcsI RAATTY 1 cut(s) 522
AcuI CTGAAG 1 cut(s) 534
AfaI GTAC 3 cut(s) 300, 629, 719
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 7 cut(s) 281, 317, 378, 421, 449, 623, 659
AluBI AGCT 9 cut(s) 11, 118, 243, 284, 385, 487, 518, 530, 655
AluI AGCT 9 cut(s) 11, 118, 243, 284, 385, 487, 518, 530, 655
Alw21I GWGCWC 1 cut(s) 537
AlwI GGATC 6 cut(s) 299, 411, 428, 441, 595, 652
AoxI GGCC 2 cut(s) 208, 227
ApeKI GCWGC 3 cut(s) 15, 243, 460
ApoI RAATTY 1 cut(s) 522
AspLEI GCGC 4 cut(s) 154, 156, 465, 510
AspS9I GGNCC 1 cut(s) 700
AsuHPI GGTGA 2 cut(s) 57, 250
AsuII TTCGAA 1 cut(s) 48
AvaII GGWCC 1 cut(s) 700
BamHI GGATCC 1 cut(s) 433
BbsI GAAGAC 2 cut(s) 44, 57
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 3 cut(s) 27, 230, 472
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 700
BcgI CGANNNNNNTGC 4 cut(s) 4, 38, 371, 405
BfaI CTAG 1 cut(s) 527
BglII AGATCT 1 cut(s) 451
BisI GCNGC 3 cut(s) 16, 244, 461
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 3 cut(s) 17, 245, 462
Bme18I GGWCC 1 cut(s) 700
BmgT120I GGNCC 1 cut(s) 700
BmiI GGNNCC 1 cut(s) 435
BpiI GAAGAC 2 cut(s) 44, 57
Bpu1102I GCTNAGC 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 623
BsaAI YACGTR 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 522, 588
BseNI ACTGG 1 cut(s) 32
BsePI GCGCGC 1 cut(s) 152
BseRI GAGGAG 6 cut(s) 107, 110, 113, 116, 125, 128
BseXI GCAGC 3 cut(s) 27, 230, 472
Bsh1236I CGCG 2 cut(s) 154, 310
BshFI GGCC 2 cut(s) 210, 229
BsiHKAI GWGCWC 1 cut(s) 537
BsiSI CCGG 1 cut(s) 226
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 2 cut(s) 210, 229
Bsp119I TTCGAA 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 537
Bsp143I GATC 6 cut(s) 304, 403, 433, 451, 600, 644
Bsp1720I GCTNAGC 1 cut(s) 531
BspACI CCGC 1 cut(s) 308
BspANI GGCC 2 cut(s) 210, 229
BspCNI CTCAG 2 cut(s) 523, 589
BspFNI CGCG 2 cut(s) 154, 310
BspLI GGNNCC 1 cut(s) 435
BspPI GGATC 6 cut(s) 299, 411, 428, 441, 595, 652
BspT104I TTCGAA 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 225
BssHII GCGCGC 1 cut(s) 152
BssMI GATC 6 cut(s) 304, 403, 433, 451, 600, 644
Bst4CI ACNGT 1 cut(s) 722
Bst6I CTCTTC 4 cut(s) 79, 84, 189, 350
BstBAI YACGTR 1 cut(s) 302
BstBI TTCGAA 1 cut(s) 48
BstC8I GCNNGC 5 cut(s) 9, 13, 120, 154, 653
BstDEI CTNAG 3 cut(s) 504, 531, 597
BstFNI CGCG 2 cut(s) 154, 310
BstHHI GCGC 4 cut(s) 154, 156, 465, 510
BstKTI GATC 6 cut(s) 307, 406, 436, 454, 603, 647
BstMBI GATC 6 cut(s) 304, 403, 433, 451, 600, 644
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNSI RCATGY 2 cut(s) 173, 715
BstUI CGCG 2 cut(s) 154, 310
BstV1I GCAGC 3 cut(s) 27, 230, 472
BstV2I GAAGAC 2 cut(s) 44, 57
BstX2I RGATCY 5 cut(s) 403, 433, 451, 600, 644
BstYI RGATCY 5 cut(s) 403, 433, 451, 600, 644
BsuRI GGCC 2 cut(s) 210, 229
BtsIMutI CAGTG 2 cut(s) 39, 510
Cac8I GCNNGC 5 cut(s) 9, 13, 120, 154, 653
CfoI GCGC 4 cut(s) 154, 156, 465, 510
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 700
Csp6I GTAC 3 cut(s) 299, 628, 718
CviAII CATG 2 cut(s) 170, 712
CviQI GTAC 3 cut(s) 299, 628, 718
DdeI CTNAG 3 cut(s) 504, 531, 597
DpnI GATC 6 cut(s) 306, 405, 435, 453, 602, 646
DpnII GATC 6 cut(s) 304, 403, 433, 451, 600, 644
EaeI YGGCCR 2 cut(s) 208, 227
Eam1104I CTCTTC 4 cut(s) 79, 84, 189, 350
EarI CTCTTC 4 cut(s) 79, 84, 189, 350
Eco47I GGWCC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 534
FaeI CATG 2 cut(s) 173, 715
FaiI YATR 5 cut(s) 171, 325, 363, 467, 713
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 169, 711
FblI GTMKAC 1 cut(s) 724
Fnu4HI GCNGC 3 cut(s) 16, 244, 461
Fsp4HI GCNGC 3 cut(s) 16, 244, 461
FspBI CTAG 1 cut(s) 527
GlaI GCGC 4 cut(s) 153, 155, 464, 509
GluI GCNGC 3 cut(s) 16, 244, 461
HaeIII GGCC 2 cut(s) 210, 229
HapII CCGG 1 cut(s) 226
HhaI GCGC 4 cut(s) 154, 156, 465, 510
Hin1II CATG 2 cut(s) 173, 715
Hin6I GCGC 4 cut(s) 152, 154, 463, 508
HinP1I GCGC 4 cut(s) 152, 154, 463, 508
HindIII AAGCTT 1 cut(s) 653
HinfI GANTC 3 cut(s) 59, 317, 497
HpaII CCGG 1 cut(s) 226
HphI GGTGA 2 cut(s) 57, 250
Hpy166II GTNNAC 1 cut(s) 725
Hpy188I TCNGA 7 cut(s) 26, 82, 288, 336, 496, 598, 605
Hpy188III TCNNGA 2 cut(s) 437, 589
Hpy8I GTNNAC 1 cut(s) 725
HpyAV CCTTC 5 cut(s) 78, 196, 424, 589, 673
HpyCH4III ACNGT 1 cut(s) 722
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 3 cut(s) 122, 145, 246
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 3 cut(s) 504, 531, 597
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 2 cut(s) 173, 715
HspAI GCGC 4 cut(s) 152, 154, 463, 508
Kzo9I GATC 6 cut(s) 304, 403, 433, 451, 600, 644
LmnI GCTCC 5 cut(s) 4, 115, 161, 289, 670
LpnPI CCDG 7 cut(s) 45, 239, 267, 386, 402, 450, 633
Lsp1109I GCAGC 3 cut(s) 27, 230, 472
MaeI CTAG 1 cut(s) 527
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 127
MalI GATC 6 cut(s) 306, 405, 435, 453, 602, 646
MboI GATC 6 cut(s) 304, 403, 433, 451, 600, 644
MfeI CAATTG 1 cut(s) 416
MflI RGATCY 5 cut(s) 403, 433, 451, 600, 644
MhlI GDGCHC 1 cut(s) 537
MluCI AATT 2 cut(s) 416, 522
MspI CCGG 1 cut(s) 226
MunI CAATTG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 694
MvnI CGCG 2 cut(s) 154, 310
MwoI GCNNNNNNNGC 1 cut(s) 151
NdeII GATC 6 cut(s) 304, 403, 433, 451, 600, 644
NlaIII CATG 2 cut(s) 173, 715
NlaIV GGNNCC 1 cut(s) 435
NmeAIII GCCGAG 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 2 cut(s) 173, 715
NspV TTCGAA 1 cut(s) 48
PauI GCGCGC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 2 cut(s) 54, 307
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 3 cut(s) 59, 317, 497
PkrI GCNGC 3 cut(s) 17, 245, 462
Ppu21I YACGTR 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 1 cut(s) 700
PsuI RGATCY 5 cut(s) 403, 433, 451, 600, 644
PteI GCGCGC 1 cut(s) 152
RsaI GTAC 3 cut(s) 300, 629, 719
RsaNI GTAC 3 cut(s) 299, 628, 718
SatI GCNGC 3 cut(s) 16, 244, 461
Sau3AI GATC 6 cut(s) 304, 403, 433, 451, 600, 644
Sau96I GGNCC 1 cut(s) 700
SduI GDGCHC 1 cut(s) 537
SfuI TTCGAA 1 cut(s) 48
SinI GGWCC 1 cut(s) 700
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 2 cut(s) 416, 522
SsiI CCGC 1 cut(s) 308
SspMI CTAG 1 cut(s) 527
TaaI ACNGT 1 cut(s) 722
TaiI ACGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 48, 428
TasI AATT 2 cut(s) 416, 522
TatI WGTACW 1 cut(s) 627
TfiI GAWTC 3 cut(s) 59, 317, 497
TscAI CASTG 2 cut(s) 39, 517
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 3 cut(s) 15, 243, 460
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 102, 489
TspRI CASTG 2 cut(s) 39, 517
VpaK11BI GGWCC 1 cut(s) 700
XapI RAATTY 1 cut(s) 522
XceI RCATGY 2 cut(s) 173, 715
XmiI GTMKAC 1 cut(s) 724
XspI CTAG 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.