Vegetative cell wall protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28440 AT3G45230 AT5G60630 |
| fragaria_vesca | FvH4_3g32420 |
| prunus_persica | Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1 |
| pyrus_communis | pycom11g11220 |
| rosa_chinensis | RchiOBHm_Chr5g0059401 |
| rosa_laevigata | RLG00000033252 |
| rosa_multiflora | Rmu_sc0004458.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00021080 |
| rosa_rugosa | Rorug05G0322700 |
| rosa_samantha | Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900 |
| rosa_wichuraiana | Rw5G036430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 120 |
| AarI | CACCTGC | 1 cut(s) | 160 |
| Acc36I | ACCTGC | 1 cut(s) | 160 |
| AcoI | YGGCCR | 1 cut(s) | 48 |
| AcuI | CTGAAG | 1 cut(s) | 237 |
| AfaI | GTAC | 1 cut(s) | 341 |
| AgsI | TTSAA | 1 cut(s) | 10 |
| AjnI | CCWGG | 1 cut(s) | 139 |
| AluBI | AGCT | 3 cut(s) | 41, 383, 389 |
| AluI | AGCT | 3 cut(s) | 41, 383, 389 |
| Alw26I | GTCTC | 1 cut(s) | 137 |
| AoxI | GGCC | 1 cut(s) | 48 |
| ApeKI | GCWGC | 2 cut(s) | 383, 386 |
| AspLEI | GCGC | 1 cut(s) | 149 |
| AspS9I | GGNCC | 1 cut(s) | 91 |
| AsuHPI | GGTGA | 2 cut(s) | 53, 129 |
| AvaII | GGWCC | 1 cut(s) | 91 |
| BalI | TGGCCA | 1 cut(s) | 50 |
| BbsI | GAAGAC | 1 cut(s) | 243 |
| BbvI | GCAGC | 2 cut(s) | 370, 398 |
| BceAI | ACGGC | 1 cut(s) | 71 |
| BciT130I | CCWGG | 1 cut(s) | 141 |
| BcoDI | GTCTC | 1 cut(s) | 137 |
| BfaI | CTAG | 1 cut(s) | 390 |
| BfmI | CTRYAG | 1 cut(s) | 384 |
| BfuAI | ACCTGC | 1 cut(s) | 160 |
| Bme1390I | CCNGG | 1 cut(s) | 141 |
| Bme18I | GGWCC | 1 cut(s) | 91 |
| BmgT120I | GGNCC | 1 cut(s) | 91 |
| BmrFI | CCNGG | 1 cut(s) | 141 |
| BpiI | GAAGAC | 1 cut(s) | 243 |
| BseBI | CCWGG | 1 cut(s) | 141 |
| BseXI | GCAGC | 2 cut(s) | 370, 398 |
| BsgI | GTGCAG | 1 cut(s) | 138 |
| BshFI | GGCC | 1 cut(s) | 50 |
| BsmAI | GTCTC | 1 cut(s) | 137 |
| BsnI | GGCC | 1 cut(s) | 50 |
| Bsp1407I | TGTACA | 1 cut(s) | 339 |
| BspANI | GGCC | 1 cut(s) | 50 |
| BspMAI | CTGCAG | 1 cut(s) | 388 |
| BspMI | ACCTGC | 1 cut(s) | 160 |
| BsrGI | TGTACA | 1 cut(s) | 339 |
| Bst2UI | CCWGG | 1 cut(s) | 141 |
| Bst6I | CTCTTC | 1 cut(s) | 361 |
| BstAUI | TGTACA | 1 cut(s) | 339 |
| BstDEI | CTNAG | 1 cut(s) | 263 |
| BstHHI | GCGC | 1 cut(s) | 149 |
| BstMAI | GTCTC | 1 cut(s) | 137 |
| BstNI | CCWGG | 1 cut(s) | 141 |
| BstSCI | CCNGG | 1 cut(s) | 139 |
| BstSFI | CTRYAG | 1 cut(s) | 384 |
| BstV1I | GCAGC | 2 cut(s) | 370, 398 |
| BstV2I | GAAGAC | 1 cut(s) | 243 |
| BsuRI | GGCC | 1 cut(s) | 50 |
| BveI | ACCTGC | 1 cut(s) | 160 |
| CfoI | GCGC | 1 cut(s) | 149 |
| Cfr13I | GGNCC | 1 cut(s) | 91 |
| Csp6I | GTAC | 1 cut(s) | 340 |
| CviAII | CATG | 2 cut(s) | 46, 361 |
| CviJI | RGCY | 5 cut(s) | 41, 50, 58, 383, 389 |
| CviKI_1 | RGCY | 5 cut(s) | 41, 50, 58, 383, 389 |
| CviQI | GTAC | 1 cut(s) | 340 |
| DdeI | CTNAG | 1 cut(s) | 263 |
| EaeI | YGGCCR | 1 cut(s) | 48 |
| Eam1104I | CTCTTC | 1 cut(s) | 361 |
| EarI | CTCTTC | 1 cut(s) | 361 |
| EciI | GGCGGA | 1 cut(s) | 345 |
| Eco47I | GGWCC | 1 cut(s) | 91 |
| Eco57I | CTGAAG | 1 cut(s) | 237 |
| EcoRII | CCWGG | 1 cut(s) | 139 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 2 cut(s) | 49, 364 |
| FaiI | YATR | 6 cut(s) | 27, 47, 67, 120, 162, 362 |
| FatI | CATG | 2 cut(s) | 45, 360 |
| FspBI | CTAG | 1 cut(s) | 390 |
| GlaI | GCGC | 1 cut(s) | 148 |
| HaeIII | GGCC | 1 cut(s) | 50 |
| HhaI | GCGC | 1 cut(s) | 149 |
| Hin1II | CATG | 2 cut(s) | 49, 364 |
| Hin6I | GCGC | 1 cut(s) | 147 |
| HinP1I | GCGC | 1 cut(s) | 147 |
| HincII | GTYRAC | 1 cut(s) | 103 |
| HindII | GTYRAC | 1 cut(s) | 103 |
| HinfI | GANTC | 1 cut(s) | 333 |
| HpaI | GTTAAC | 1 cut(s) | 103 |
| HphI | GGTGA | 2 cut(s) | 53, 129 |
| Hpy166II | GTNNAC | 2 cut(s) | 103, 340 |
| Hpy188III | TCNNGA | 2 cut(s) | 16, 255 |
| Hpy8I | GTNNAC | 2 cut(s) | 103, 340 |
| HpyAV | CCTTC | 1 cut(s) | 271 |
| HpyCH4IV | ACGT | 1 cut(s) | 349 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 155, 386 |
| HpyF3I | CTNAG | 1 cut(s) | 263 |
| HpySE526I | ACGT | 1 cut(s) | 349 |
| Hsp92II | CATG | 2 cut(s) | 49, 364 |
| HspAI | GCGC | 1 cut(s) | 147 |
| KspAI | GTTAAC | 1 cut(s) | 103 |
| LmnI | GCTCC | 1 cut(s) | 380 |
| LpnPI | CCDG | 6 cut(s) | 126, 153, 165, 240, 267, 297 |
| Lsp1109I | GCAGC | 2 cut(s) | 370, 398 |
| MaeI | CTAG | 1 cut(s) | 390 |
| MaeII | ACGT | 1 cut(s) | 349 |
| MaeIII | GTNAC | 1 cut(s) | 109 |
| MboII | GAAGA | 2 cut(s) | 243, 378 |
| MlsI | TGGCCA | 1 cut(s) | 50 |
| MluNI | TGGCCA | 1 cut(s) | 50 |
| MnlI | CCTC | 6 cut(s) | 40, 104, 124, 137, 251, 362 |
| Mox20I | TGGCCA | 1 cut(s) | 50 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MscI | TGGCCA | 1 cut(s) | 50 |
| MseI | TTAA | 1 cut(s) | 102 |
| Msp20I | TGGCCA | 1 cut(s) | 50 |
| MspR9I | CCNGG | 1 cut(s) | 141 |
| MvaI | CCWGG | 1 cut(s) | 141 |
| NlaIII | CATG | 2 cut(s) | 49, 364 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PaqCI | CACCTGC | 1 cut(s) | 160 |
| PfeI | GAWTC | 1 cut(s) | 333 |
| PsiI | TTATAA | 1 cut(s) | 120 |
| Psp6I | CCWGG | 1 cut(s) | 139 |
| PspGI | CCWGG | 1 cut(s) | 139 |
| PspPI | GGNCC | 1 cut(s) | 91 |
| PstI | CTGCAG | 1 cut(s) | 388 |
| RsaI | GTAC | 1 cut(s) | 341 |
| RsaNI | GTAC | 1 cut(s) | 340 |
| SaqAI | TTAA | 1 cut(s) | 102 |
| Sau96I | GGNCC | 1 cut(s) | 91 |
| ScrFI | CCNGG | 1 cut(s) | 141 |
| SetI | ASST | 9 cut(s) | 43, 66, 116, 154, 235, 352, 385, 391, 401 |
| SfcI | CTRYAG | 1 cut(s) | 384 |
| SinI | GGWCC | 1 cut(s) | 91 |
| SspMI | CTAG | 1 cut(s) | 390 |
| StyD4I | CCNGG | 1 cut(s) | 139 |
| TaiI | ACGT | 1 cut(s) | 352 |
| TatI | WGTACW | 1 cut(s) | 339 |
| TfiI | GAWTC | 1 cut(s) | 333 |
| Tru1I | TTAA | 1 cut(s) | 102 |
| Tru9I | TTAA | 1 cut(s) | 102 |
| TseI | GCWGC | 2 cut(s) | 383, 386 |
| TspDTI | ATGAA | 1 cut(s) | 177 |
| VpaK11BI | GGWCC | 1 cut(s) | 91 |
| XspI | CTAG | 1 cut(s) | 390 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |