Rh5DG414100

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013018
Physical Location & Seq
Reverse (-)
65837440 .. 65850173
12734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG414100.1

Sequence Viewer

Length: 744 bp
ATGAGTGCGGGGAAGAAGGCCGGGATCGGACTCGGAGTCATCGTCGGGGTTGGGTTGGTCGGACTCGGAGCGGTTGTGTACAAGAGGCGCCAGGATAACATTCGCAGATCTCAACTACATTTATGGGCTATAAGGACATCCAATCAGGTAGAACTAAGCCTCGCCTGTGTCGGCGGACGACAGCAGCCGCTGTCACGGTTCTTGATTAAAGCGTCTCTCGATTCTCACTGGATTCTGGTGTTCGTCGCAGTGGTGATGTTCTCGGCAGTGTTCGTGGTGTACTTCAATCAGTCGTTGAAGCCGAAGATCGAAGATGAATCACAGAGAGGCATACGCGGAGATGGAAGGTGTTTGTTTCGATTTGTGGTTCATGGAGCTTGTCTAAGAGCAGGGAAGCCATCTCCAAGTGAAAGCCATCAGAAAGAACTTGCAGATGAGCTTAGAGAGAAGGTAGCAGATGAATTCATTAAGAGGAGGGCTGACATTGAATGGTTTCTTGAAGATGATTTTGAGAGATACATTGTACAGCTGTGGCAACCCCACATTTGGGGAGGCGAGCCTGAGTTGCTTATGTCCTCACATGTCCTACATTATATACAGAAAGTTTATGTTGCATTTCATGATGAATGCTGGGGAGTTCCAGTATGTGATGACAATCAATTGTTTGAGCTGCGTGCTCTGTCTGGGATGTTGATGGACCACAATTGGACTGGAATTGGGAAAATAAGGGAGCTGCTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

247

Amino Acids

28.13

Weight (kDa)

8.26

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 112 - 209 4.2e-17 OTU-like cysteine protease
Adenine_glyco PF03352 200 - 244 8.6e-09 Methyladenine glycosylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28440 AT3G45230 AT5G60630
fragaria_vesca FvH4_3g32420
prunus_persica Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis pycom11g11220
rosa_chinensis RchiOBHm_Chr5g0059401
rosa_laevigata RLG00000033252
rosa_multiflora Rmu_sc0004458.1_g000004
rosa_roxburghii Rroxscaffold_1G00021080
rosa_rugosa Rorug05G0322700
rosa_samantha Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana Rw5G036430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 87
AccBSI CCGCTC 1 cut(s) 71
AccII CGCG 1 cut(s) 336
AciI CCGC 5 cut(s) 8, 71, 174, 188, 336
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 3 cut(s) 80, 281, 525
AfiI CCNNNNNNNGG 2 cut(s) 546, 547
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 4 cut(s) 286, 298, 488, 500
AhdI GACNNNNNGTC 1 cut(s) 35
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 5 cut(s) 377, 439, 529, 670, 733
AluI AGCT 5 cut(s) 377, 439, 529, 670, 733
Alw21I GWGCWC 1 cut(s) 679
Alw26I GTCTC 1 cut(s) 219
AlwI GGATC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 3 cut(s) 184, 670, 733
ApoI RAATTY 1 cut(s) 461
Asp700I GAANNNNTTC 1 cut(s) 492
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 697
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 697
BanI GGYRCC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 679
BbvI GCAGC 3 cut(s) 196, 657, 720
BccI CCATC 4 cut(s) 335, 406, 423, 688
BciT130I CCWGG 1 cut(s) 92
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 91
BglII AGATCT 1 cut(s) 107
BisI GCNGC 4 cut(s) 185, 188, 671, 734
BlsI GCNGC 4 cut(s) 186, 189, 672, 735
Bme1390I CCNGG 2 cut(s) 22, 92
Bme18I GGWCC 1 cut(s) 697
BmeRI GACNNNNNGTC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 2 cut(s) 22, 92
BpuEI CTTGAG 1 cut(s) 722
BpuMI CCSGG 1 cut(s) 22
BsaBI GATNNNNATC 1 cut(s) 654
BsaHI GRCGYC 1 cut(s) 88
BsaXI ACNNNNNCTCC 6 cut(s) 27, 57, 60, 90, 627, 657
Bsc4I CCNNNNNNNGG 2 cut(s) 546, 547
Bse1I ACTGG 3 cut(s) 233, 641, 715
Bse8I GATNNNNATC 1 cut(s) 654
BseBI CCWGG 1 cut(s) 92
BseGI GGATG 2 cut(s) 137, 693
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 2 cut(s) 546, 547
BseMII CTCAG 1 cut(s) 552
BseNI ACTGG 3 cut(s) 233, 641, 715
BseRI GAGGAG 1 cut(s) 487
BseXI GCAGC 3 cut(s) 196, 657, 720
BseYI CCCAGC 1 cut(s) 630
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 679
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 546, 547
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 679
Bsp1407I TGTACA 2 cut(s) 78, 523
Bsp143I GATC 3 cut(s) 24, 107, 306
BspACI CCGC 5 cut(s) 8, 71, 174, 188, 336
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 553
BspFNI CGCG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 71
BsrGI TGTACA 2 cut(s) 78, 523
BsrI ACTGG 3 cut(s) 233, 641, 715
BssMI GATC 3 cut(s) 24, 107, 306
BssNI GRCGYC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 88
BstAUI TGTACA 2 cut(s) 78, 523
BstC8I GCNNGC 2 cut(s) 557, 675
BstDEI CTNAG 4 cut(s) 155, 383, 440, 561
BstF5I GGATG 2 cut(s) 137, 693
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 3 cut(s) 27, 110, 309
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 3 cut(s) 24, 107, 306
BstMWI GCNNNNNNNGC 1 cut(s) 565
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 20, 90
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 3 cut(s) 196, 657, 720
BstX2I RGATCY 1 cut(s) 107
BstYI RGATCY 1 cut(s) 107
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 2 cut(s) 137, 693
BtsI GCAGTG 2 cut(s) 255, 273
BtsIMutI CAGTG 3 cut(s) 226, 255, 273
Cac8I GCNNGC 2 cut(s) 557, 675
CaiI CAGNNNCTG 1 cut(s) 190
CciI TCATGA 1 cut(s) 619
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 697
CseI GACGC 1 cut(s) 201
Csp6I GTAC 3 cut(s) 79, 280, 524
CviAII CATG 3 cut(s) 371, 581, 620
CviQI GTAC 3 cut(s) 79, 280, 524
DdeI CTNAG 4 cut(s) 155, 383, 440, 561
DinI GGCGCC 1 cut(s) 89
DpnI GATC 3 cut(s) 26, 109, 308
DpnII GATC 3 cut(s) 24, 107, 306
DriI GACNNNNNGTC 1 cut(s) 35
Eam1105I GACNNNNNGTC 1 cut(s) 35
EciI GGCGGA 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 697
EcoRI GAATTC 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 90
EgeI GGCGCC 1 cut(s) 89
EheI GGCGCC 1 cut(s) 89
Esp3I CGTCTC 1 cut(s) 219
FaeI CATG 3 cut(s) 374, 584, 623
FatI CATG 3 cut(s) 370, 580, 619
Fnu4HI GCNGC 4 cut(s) 185, 188, 671, 734
FokI GGATG 2 cut(s) 124, 700
Fsp4HI GCNGC 4 cut(s) 185, 188, 671, 734
GlaI GCGC 1 cut(s) 89
GluI GCNGC 4 cut(s) 185, 188, 671, 734
GsaI CCCAGC 1 cut(s) 634
HaeII RGCGCY 1 cut(s) 91
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 21
HgaI GACGC 1 cut(s) 201
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 3 cut(s) 374, 584, 623
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HinfI GANTC 6 cut(s) 30, 36, 63, 221, 232, 317
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 79, 280
Hpy188I TCNGA 5 cut(s) 29, 35, 62, 68, 420
Hpy188III TCNNGA 4 cut(s) 202, 218, 497, 620
Hpy8I GTNNAC 2 cut(s) 79, 280
Hpy99I CGWCG 2 cut(s) 47, 248
HpyAV CCTTC 3 cut(s) 10, 339, 442
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 431, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 565
HpyF3I CTNAG 4 cut(s) 155, 383, 440, 561
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 3 cut(s) 374, 584, 623
HspAI GCGC 1 cut(s) 88
KasI GGCGCC 1 cut(s) 87
Kzo9I GATC 3 cut(s) 24, 107, 306
LmnI GCTCC 3 cut(s) 68, 374, 730
Lsp1109I GCAGC 3 cut(s) 196, 657, 720
MaeIII GTNAC 1 cut(s) 192
MalI GATC 3 cut(s) 26, 109, 308
MbiI CCGCTC 1 cut(s) 71
MboI GATC 3 cut(s) 24, 107, 306
MboII GAAGA 4 cut(s) 25, 316, 323, 512
MfeI CAATTG 2 cut(s) 659, 703
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 679
MluCI AATT 4 cut(s) 461, 659, 703, 714
Mly113I GGCGCC 1 cut(s) 88
MlyI GAGTC 3 cut(s) 24, 45, 57
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 7 cut(s) 78, 170, 320, 465, 468, 545, 586
MroXI GAANNNNTTC 1 cut(s) 492
MseI TTAA 2 cut(s) 207, 468
MspA1I CMGCKG 2 cut(s) 190, 529
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 22, 92
MunI CAATTG 2 cut(s) 659, 703
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 565
NarI GGCGCC 1 cut(s) 88
NciI CCSGG 1 cut(s) 22
NdeII GATC 3 cut(s) 24, 107, 306
NlaIII CATG 3 cut(s) 374, 584, 623
NlaIV GGNNCC 1 cut(s) 89
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 192
NspI RCATGY 1 cut(s) 584
PagI TCATGA 1 cut(s) 619
PciI ACATGT 1 cut(s) 580
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 299
PctI GAATGC 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 3 cut(s) 221, 232, 317
PkrI GCNGC 4 cut(s) 186, 189, 672, 735
PleI GAGTC 3 cut(s) 24, 44, 57
PluTI GGCGCC 1 cut(s) 91
PpsI GAGTC 3 cut(s) 24, 44, 57
PscI ACATGT 1 cut(s) 580
Psp6I CCWGG 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 630
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 697
PstNI CAGNNNCTG 1 cut(s) 190
PsuI RGATCY 1 cut(s) 107
PvuII CAGCTG 1 cut(s) 529
RsaI GTAC 3 cut(s) 80, 281, 525
RsaNI GTAC 3 cut(s) 79, 280, 524
SaqAI TTAA 2 cut(s) 207, 468
SatI GCNGC 4 cut(s) 185, 188, 671, 734
Sau3AI GATC 3 cut(s) 24, 107, 306
Sau96I GGNCC 1 cut(s) 697
SchI GAGTC 3 cut(s) 24, 45, 57
ScrFI CCNGG 2 cut(s) 22, 92
SduI GDGCHC 1 cut(s) 679
SetI ASST 8 cut(s) 150, 350, 379, 441, 453, 531, 672, 735
SfoI GGCGCC 1 cut(s) 89
SinI GGWCC 1 cut(s) 697
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
Sse9I AATT 4 cut(s) 461, 659, 703, 714
SsiI CCGC 5 cut(s) 8, 71, 174, 188, 336
SspDI GGCGCC 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 20, 90
TaaI ACNGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 219, 309, 358
TasI AATT 4 cut(s) 461, 659, 703, 714
TatI WGTACW 3 cut(s) 78, 279, 523
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 3 cut(s) 221, 232, 317
Tru1I TTAA 2 cut(s) 207, 468
Tru9I TTAA 2 cut(s) 207, 468
TscAI CASTG 3 cut(s) 233, 255, 273
TseFI GTSAC 1 cut(s) 192
TseI GCWGC 3 cut(s) 184, 670, 733
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 6 cut(s) 330, 359, 454, 474, 608, 639
TspRI CASTG 3 cut(s) 233, 255, 273
VpaK11BI GGWCC 1 cut(s) 697
XapI RAATTY 1 cut(s) 461
XceI RCATGY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.