FvH4_3g32420

Classical arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013018
Physical Location & Seq
Forward (+)
27727601 .. 27728424
824 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32420.t1

Sequence Viewer

Length: 477 bp
ATGGCGGAGCTCCTCCCCTTCTTCCTCCTCGCCTTCCTCCTACTCCAATTCACTTCCTCTTCCTCTTCACCATCTCCATCGCCTCAGCCGGATTCCGATTCGCCATCCCCGTCCGAATCTCCTCAGATTTCACTACCTCCCTTTCCCTCCGGCGCTCCGGCGAATTCCCCGAATGCGGCGGCGTCACCTCCGGCGCCGCCGTCGTTCGAGTCGCCATCTCCCCCGCCGGAACCCGCTTCCGATGCTCCCGTTCCGGAGCCAGCCAGCGACGTCAGCCACAGCGATATCAGCGCCGACGGAGAAGCTAAAACGGCGTCGTCCGACGGAGGGATGAGCGTGGGGAAGAAGGCCGGGATCGGACTCGGAGTGATCGTTGGGGTTGGATTGGTTGGACTCGGAGGGTTTGTGTACAAGAGGCGCCAGGATAACATTCGCCGATCTCAGTACGGCTACGCCGCCAGGAGAGAGATGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

16.12

Weight (kDa)

4.7

Isoelectric Point (pI)

112.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28440 AT3G45230 AT5G60630
fragaria_vesca FvH4_3g32420
prunus_persica Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis pycom11g11220
rosa_chinensis RchiOBHm_Chr5g0059401
rosa_laevigata RLG00000033252
rosa_multiflora Rmu_sc0004458.1_g000004
rosa_roxburghii Rroxscaffold_1G00021080
rosa_rugosa Rorug05G0322700
rosa_samantha Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana Rw5G036430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
AccB1I GGYRCC 2 cut(s) 193, 417
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 7 cut(s) 5, 176, 179, 197, 224, 234, 456
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 163
AcyI GRCGYC 5 cut(s) 182, 194, 270, 314, 418
AfaI GTAC 2 cut(s) 410, 446
AfiI CCNNNNNNNGG 2 cut(s) 175, 327
AjnI CCWGG 2 cut(s) 420, 458
AluBI AGCT 2 cut(s) 10, 305
AluI AGCT 2 cut(s) 10, 305
Alw21I GWGCWC 1 cut(s) 12
AlwI GGATC 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 1 cut(s) 348
ApoI RAATTY 1 cut(s) 163
AspLEI GCGC 4 cut(s) 155, 196, 293, 420
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 60, 177
BanI GGYRCC 2 cut(s) 193, 417
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 84
BccI CCATC 4 cut(s) 79, 85, 112, 223
BceAI ACGGC 3 cut(s) 184, 327, 463
BciT130I CCWGG 2 cut(s) 422, 460
BcnI CCSGG 1 cut(s) 352
BfoI RGCGCY 4 cut(s) 156, 197, 294, 421
BisI GCNGC 4 cut(s) 177, 180, 197, 456
BlsI GCNGC 4 cut(s) 178, 181, 198, 457
Bme1390I CCNGG 3 cut(s) 352, 422, 460
BmiI GGNNCC 4 cut(s) 195, 231, 258, 419
BmrFI CCNGG 3 cut(s) 352, 422, 460
BmsI GCATC 2 cut(s) 232, 459
BplI GAGNNNNNCTC 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 352
BsaHI GRCGYC 5 cut(s) 182, 194, 270, 314, 418
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 4 cut(s) 357, 387, 390, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 327
BseAI TCCGGA 1 cut(s) 253
BseBI CCWGG 2 cut(s) 422, 460
BseGI GGATG 2 cut(s) 104, 336
BseLI CCNNNNNNNGG 2 cut(s) 175, 327
BseMII CTCAG 3 cut(s) 98, 137, 455
BseRI GAGGAG 2 cut(s) 17, 111
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 2 cut(s) 193, 417
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 7 cut(s) 89, 150, 158, 191, 227, 254, 351
BslI CCNNNNNNNGG 2 cut(s) 175, 327
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 253
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 3 cut(s) 354, 369, 437
BspACI CCGC 7 cut(s) 5, 176, 179, 197, 224, 234, 456
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 3 cut(s) 97, 136, 454
BspEI TCCGGA 1 cut(s) 253
BspLI GGNNCC 4 cut(s) 195, 231, 258, 419
BspPI GGATC 1 cut(s) 362
BspT107I GGYRCC 2 cut(s) 193, 417
BsrGI TGTACA 1 cut(s) 408
BssMI GATC 3 cut(s) 354, 369, 437
BssNI GRCGYC 5 cut(s) 182, 194, 270, 314, 418
Bst2UI CCWGG 2 cut(s) 422, 460
Bst6I CTCTTC 2 cut(s) 64, 70
BstACI GRCGYC 5 cut(s) 182, 194, 270, 314, 418
BstAUI TGTACA 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 261, 265
BstDEI CTNAG 3 cut(s) 84, 123, 441
BstF5I GGATG 2 cut(s) 104, 336
BstH2I RGCGCY 4 cut(s) 156, 197, 294, 421
BstHHI GCGC 4 cut(s) 155, 196, 293, 420
BstKTI GATC 3 cut(s) 357, 372, 440
BstMBI GATC 3 cut(s) 354, 369, 437
BstMWI GCNNNNNNNGC 4 cut(s) 242, 273, 288, 311
BstNI CCWGG 2 cut(s) 422, 460
BstSCI CCNGG 3 cut(s) 350, 420, 458
BsuRI GGCC 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 2 cut(s) 104, 336
Cac8I GCNNGC 2 cut(s) 261, 265
CfoI GCGC 4 cut(s) 155, 196, 293, 420
CseI GACGC 2 cut(s) 171, 303
Csp6I GTAC 2 cut(s) 409, 445
CviJI RGCY 8 cut(s) 10, 88, 259, 263, 276, 305, 350, 450
CviKI_1 RGCY 8 cut(s) 10, 88, 259, 263, 276, 305, 350, 450
CviQI GTAC 2 cut(s) 409, 445
DdeI CTNAG 3 cut(s) 84, 123, 441
DinI GGCGCC 2 cut(s) 195, 419
DpnI GATC 3 cut(s) 356, 371, 439
DpnII GATC 3 cut(s) 354, 369, 437
Eam1104I CTCTTC 2 cut(s) 64, 70
EarI CTCTTC 2 cut(s) 64, 70
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 12
Eco32I GATATC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 163
EcoRII CCWGG 2 cut(s) 420, 458
EcoRV GATATC 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 12
EgeI GGCGCC 2 cut(s) 195, 419
EheI GGCGCC 2 cut(s) 195, 419
FauI CCCGC 2 cut(s) 231, 241
Fnu4HI GCNGC 4 cut(s) 177, 180, 197, 456
FokI GGATG 2 cut(s) 91, 343
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 4 cut(s) 177, 180, 197, 456
GlaI GCGC 4 cut(s) 154, 195, 292, 419
GluI GCNGC 4 cut(s) 177, 180, 197, 456
HaeII RGCGCY 4 cut(s) 156, 197, 294, 421
HaeIII GGCC 1 cut(s) 350
HapII CCGG 7 cut(s) 89, 150, 158, 191, 227, 254, 351
HgaI GACGC 2 cut(s) 171, 303
HhaI GCGC 4 cut(s) 155, 196, 293, 420
Hin1I GRCGYC 5 cut(s) 182, 194, 270, 314, 418
Hin6I GCGC 4 cut(s) 153, 194, 291, 418
HinP1I GCGC 4 cut(s) 153, 194, 291, 418
HinfI GANTC 6 cut(s) 92, 98, 116, 209, 360, 393
HpaII CCGG 7 cut(s) 89, 150, 158, 191, 227, 254, 351
HphI GGTGA 2 cut(s) 60, 177
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 9 cut(s) 97, 115, 126, 241, 322, 359, 365, 398, 476
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 5 cut(s) 205, 272, 299, 319, 326
HpyAV CCTTC 3 cut(s) 28, 43, 340
HpyCH4IV ACGT 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 273, 288, 311
HpyF3I CTNAG 3 cut(s) 84, 123, 441
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 5 cut(s) 182, 194, 270, 314, 418
HspAI GCGC 4 cut(s) 153, 194, 291, 418
KasI GGCGCC 2 cut(s) 193, 417
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 3 cut(s) 354, 369, 437
LmnI GCTCC 5 cut(s) 7, 15, 160, 250, 256
LweI GCATC 2 cut(s) 232, 459
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 183
MalI GATC 3 cut(s) 356, 371, 439
MboI GATC 3 cut(s) 354, 369, 437
MboII GAAGA 4 cut(s) 13, 51, 57, 355
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 2 cut(s) 47, 163
Mly113I GGCGCC 2 cut(s) 194, 418
MlyI GAGTC 3 cut(s) 218, 354, 387
MmeI TCCRAC 3 cut(s) 345, 361, 370
MroI TCCGGA 1 cut(s) 253
MspI CCGG 7 cut(s) 89, 150, 158, 191, 227, 254, 351
MspR9I CCNGG 3 cut(s) 352, 422, 460
Mva1269I GAATGC 1 cut(s) 178
MvaI CCWGG 2 cut(s) 422, 460
MwoI GCNNNNNNNGC 4 cut(s) 242, 273, 288, 311
NarI GGCGCC 2 cut(s) 194, 418
NciI CCSGG 1 cut(s) 352
NdeII GATC 3 cut(s) 354, 369, 437
NlaIV GGNNCC 4 cut(s) 195, 231, 258, 419
NmuCI GTSAC 1 cut(s) 183
PcsI WCGNNNNNNNCGW 2 cut(s) 107, 369
PctI GAATGC 1 cut(s) 178
PfeI GAWTC 3 cut(s) 92, 98, 116
PkrI GCNGC 4 cut(s) 178, 181, 198, 457
PleI GAGTC 3 cut(s) 217, 354, 387
PluTI GGCGCC 2 cut(s) 197, 421
PpsI GAGTC 3 cut(s) 217, 354, 387
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 420, 458
PspGI CCWGG 2 cut(s) 420, 458
PspN4I GGNNCC 4 cut(s) 195, 231, 258, 419
RsaI GTAC 2 cut(s) 410, 446
RsaNI GTAC 2 cut(s) 409, 445
SacI GAGCTC 1 cut(s) 12
SatI GCNGC 4 cut(s) 177, 180, 197, 456
Sau3AI GATC 3 cut(s) 354, 369, 437
SchI GAGTC 3 cut(s) 218, 354, 387
ScrFI CCNGG 3 cut(s) 352, 422, 460
SduI GDGCHC 1 cut(s) 12
SetI ASST 5 cut(s) 12, 139, 190, 273, 307
SfaNI GCATC 2 cut(s) 232, 459
SfoI GGCGCC 2 cut(s) 195, 419
Sse9I AATT 2 cut(s) 47, 163
SsiI CCGC 7 cut(s) 5, 176, 179, 197, 224, 234, 456
SspDI GGCGCC 2 cut(s) 193, 417
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 3 cut(s) 350, 420, 458
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 207
TasI AATT 2 cut(s) 47, 163
TatI WGTACW 1 cut(s) 408
TauI GCSGC 4 cut(s) 179, 182, 199, 458
TfiI GAWTC 3 cut(s) 92, 98, 116
TseFI GTSAC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 183
TspGWI ACGGA 2 cut(s) 312, 339
XapI RAATTY 1 cut(s) 163
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.