Prupe.6G101100_v2.0.a1

Classical arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013018
Physical Location & Seq
Reverse (-)
7040939 .. 7042177
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G101100.1

Sequence Viewer

Length: 522 bp
ATGGCGAGGTTCATCGAGCTCTGCTCGCCTCTGCTTCTTGCCTTTCTCCTAGTCCAATTCTCCATTGTATCTTCTTCGTCTCCACCACGGCCCTCGCCGACTCCATCGCCTCAACCCGCTGCCGATTCACCTTCTCCGAAATCTCCATCGACGAAATCTCCATCGCCGATTTCCCTTCCTCCATCTCCGTCGAACGCTCCAGTGAACTCACCACATCCTTCTTCACCTCCGGCGCCACCGCAATCATCTCCGTCTCAATCTCCGTCGGCCGATGACACGCCTCCAGTTCCTTCTCCAGCGCCGTCGAATCCGAGCGACGTCAACCACAGCGACGTCAACGCGGACGGAGACGGAGCTAAGAACTCCTCTGGAGGAATGAGCCCGGGAAAGAAGGCAGGGGTCGTACTTGGAGTGATCGTCGGGGTTGGCGTGGTAGGGCTTGCAGGCTTTGTCTACAAGAAACGTCAGGATAACGTTCGTCGATCTCAGTACGGATACGCCGCCAGGAGAGAGATTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

17.62

Weight (kDa)

9.46

Isoelectric Point (pI)

115.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013018)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28440 AT3G45230 AT5G60630
fragaria_vesca FvH4_3g32420
prunus_persica Prupe.2G214100_v2.0.a1 Prupe.6G101100_v2.0.a1
pyrus_communis pycom11g11220
rosa_chinensis RchiOBHm_Chr5g0059401
rosa_laevigata RLG00000033252
rosa_multiflora Rmu_sc0004458.1_g000004
rosa_roxburghii Rroxscaffold_1G00021080
rosa_rugosa Rorug05G0322700
rosa_samantha Rh5AG387200 Rh5BG398500 Rh5CG422600 Rh5DG414100 Rh6CG137900
rosa_wichuraiana Rw5G036430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 321, 336
AccB1I GGYRCC 1 cut(s) 232
AccI GTMKAC 1 cut(s) 453
AccII CGCG 1 cut(s) 341
AciI CCGC 4 cut(s) 117, 239, 341, 501
AclI AACGTT 1 cut(s) 474
AcoI YGGCCR 1 cut(s) 267
AcyI GRCGYC 3 cut(s) 233, 318, 333
AfaI GTAC 2 cut(s) 405, 491
AjnI CCWGG 1 cut(s) 503
AluBI AGCT 2 cut(s) 19, 356
AluI AGCT 2 cut(s) 19, 356
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 3 cut(s) 84, 258, 342
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 2 cut(s) 89, 267
ApeKI GCWGC 1 cut(s) 119
AspLEI GCGC 2 cut(s) 235, 301
AspS9I GGNCC 1 cut(s) 90
AsuC2I CCSGG 2 cut(s) 383, 384
AsuHPI GGTGA 3 cut(s) 120, 201, 216
AvaI CYCGRG 1 cut(s) 382
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 2 cut(s) 21, 383
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 106
BccI CCATC 4 cut(s) 112, 154, 169, 190
BceAI ACGGC 2 cut(s) 104, 286
BciT130I CCWGG 1 cut(s) 505
BciVI GTATCC 1 cut(s) 488
BcnI CCSGG 2 cut(s) 383, 384
BcoDI GTCTC 3 cut(s) 84, 258, 342
BfaI CTAG 1 cut(s) 50
BfoI RGCGCY 2 cut(s) 236, 302
BfuI GTATCC 1 cut(s) 488
BisI GCNGC 2 cut(s) 120, 501
BlsI GCNGC 2 cut(s) 121, 502
Bme1390I CCNGG 3 cut(s) 383, 384, 505
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 3 cut(s) 383, 384, 505
BplI GAGNNNNNCTC 3 cut(s) 8, 40, 501
BpmI CTGGAG 4 cut(s) 183, 267, 279, 390
BpuMI CCSGG 2 cut(s) 383, 384
BsaHI GRCGYC 3 cut(s) 233, 318, 333
BsaJI CCNNGG 2 cut(s) 86, 382
BsaXI ACNNNNNCTCC 4 cut(s) 142, 172, 402, 432
Bse1I ACTGG 2 cut(s) 200, 284
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 2 cut(s) 86, 382
BseGI GGATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 2 cut(s) 200, 284
BseRI GAGGAG 1 cut(s) 355
BseX3I CGGCCG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 341
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 2 cut(s) 91, 269
BshNI GGYRCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 382
BsiSI CCGG 2 cut(s) 230, 383
BsmAI GTCTC 3 cut(s) 84, 258, 342
BsmBI CGTCTC 3 cut(s) 84, 258, 342
BsnI GGCC 2 cut(s) 91, 269
BsoBI CYCGRG 1 cut(s) 382
Bsp1286I GDGCHC 2 cut(s) 21, 383
Bsp143I GATC 2 cut(s) 414, 482
BspACI CCGC 4 cut(s) 117, 239, 341, 501
BspANI GGCC 2 cut(s) 91, 269
BspCNI CTCAG 1 cut(s) 499
BspFNI CGCG 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 232
BsrI ACTGG 2 cut(s) 200, 284
BssECI CCNNGG 2 cut(s) 86, 382
BssMI GATC 2 cut(s) 414, 482
BssNI GRCGYC 3 cut(s) 233, 318, 333
Bst2UI CCWGG 1 cut(s) 505
BstACI GRCGYC 3 cut(s) 233, 318, 333
BstC8I GCNNGC 3 cut(s) 26, 441, 445
BstDEI CTNAG 2 cut(s) 357, 486
BstDSI CCRYGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 341
BstH2I RGCGCY 2 cut(s) 236, 302
BstHHI GCGC 2 cut(s) 235, 301
BstKTI GATC 2 cut(s) 417, 485
BstMAI GTCTC 3 cut(s) 84, 258, 342
BstMBI GATC 2 cut(s) 414, 482
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 505
BstSCI CCNGG 3 cut(s) 381, 382, 503
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 106
BstZI CGGCCG 1 cut(s) 267
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 2 cut(s) 91, 269
BtgI CCRYGG 1 cut(s) 86
BtgZI GCGATG 2 cut(s) 90, 147
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 3 cut(s) 26, 441, 445
CfoI GCGC 2 cut(s) 235, 301
Cfr13I GGNCC 1 cut(s) 90
Cfr9I CCCGGG 1 cut(s) 382
Csp6I GTAC 2 cut(s) 404, 490
CviJI RGCY 7 cut(s) 19, 91, 269, 356, 381, 439, 447
CviKI_1 RGCY 7 cut(s) 19, 91, 269, 356, 381, 439, 447
CviQI GTAC 2 cut(s) 404, 490
DdeI CTNAG 2 cut(s) 357, 486
DinI GGCGCC 1 cut(s) 234
DpnI GATC 2 cut(s) 416, 484
DpnII GATC 2 cut(s) 414, 482
EaeI YGGCCR 1 cut(s) 267
EagI CGGCCG 1 cut(s) 267
Ecl136II GAGCTC 1 cut(s) 19
EclXI CGGCCG 1 cut(s) 267
Eco24I GRGCYC 2 cut(s) 21, 383
Eco52I CGGCCG 1 cut(s) 267
Eco53kI GAGCTC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 382
EcoICRI GAGCTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 503
EcoT38I GRGCYC 2 cut(s) 21, 383
EgeI GGCGCC 1 cut(s) 234
EheI GGCGCC 1 cut(s) 234
Esp3I CGTCTC 3 cut(s) 84, 258, 342
FauI CCCGC 1 cut(s) 124
FblI GTMKAC 1 cut(s) 453
Fnu4HI GCNGC 2 cut(s) 120, 501
FokI GGATG 1 cut(s) 201
FriOI GRGCYC 2 cut(s) 21, 383
Fsp4HI GCNGC 2 cut(s) 120, 501
FspBI CTAG 1 cut(s) 50
GlaI GCGC 2 cut(s) 234, 300
GluI GCNGC 2 cut(s) 120, 501
GsuI CTGGAG 4 cut(s) 183, 267, 279, 390
HaeII RGCGCY 2 cut(s) 236, 302
HaeIII GGCC 2 cut(s) 91, 269
HapII CCGG 2 cut(s) 230, 383
HhaI GCGC 2 cut(s) 235, 301
Hin1I GRCGYC 3 cut(s) 233, 318, 333
Hin6I GCGC 2 cut(s) 233, 299
HinP1I GCGC 2 cut(s) 233, 299
HincII GTYRAC 2 cut(s) 322, 337
HindII GTYRAC 2 cut(s) 322, 337
HinfI GANTC 4 cut(s) 100, 125, 307, 514
HpaII CCGG 2 cut(s) 230, 383
HphI GGTGA 3 cut(s) 120, 201, 216
Hpy166II GTNNAC 4 cut(s) 205, 322, 337, 454
Hpy188I TCNGA 3 cut(s) 138, 312, 521
Hpy188III TCNNGA 2 cut(s) 369, 467
Hpy8I GTNNAC 4 cut(s) 205, 322, 337, 454
Hpy99I CGWCG 8 cut(s) 154, 193, 268, 307, 320, 335, 422, 483
HpyAV CCTTC 5 cut(s) 141, 185, 228, 300, 385
HpyCH4IV ACGT 4 cut(s) 318, 333, 463, 474
HpyCH4V TGCA 1 cut(s) 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 357, 486
HpySE526I ACGT 4 cut(s) 318, 333, 463, 474
Hsp92I GRCGYC 3 cut(s) 233, 318, 333
HspAI GCGC 2 cut(s) 233, 299
KasI GGCGCC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 414, 482
LmnI GCTCC 2 cut(s) 202, 353
Lsp1109I GCAGC 1 cut(s) 106
MaeI CTAG 1 cut(s) 50
MaeII ACGT 4 cut(s) 318, 333, 463, 474
MalI GATC 2 cut(s) 416, 484
MboI GATC 2 cut(s) 414, 482
MboII GAAGA 3 cut(s) 63, 66, 213
MhlI GDGCHC 2 cut(s) 21, 383
MluCI AATT 1 cut(s) 56
Mly113I GGCGCC 1 cut(s) 233
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 8 cut(s) 39, 103, 120, 189, 237, 291, 365, 376
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 2 cut(s) 230, 383
MspR9I CCNGG 3 cut(s) 383, 384, 505
MvaI CCWGG 1 cut(s) 505
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 1 cut(s) 25
NarI GGCGCC 1 cut(s) 233
NciI CCSGG 2 cut(s) 383, 384
NdeII GATC 2 cut(s) 414, 482
NlaIV GGNNCC 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PfeI GAWTC 3 cut(s) 125, 307, 514
PkrI GCNGC 2 cut(s) 121, 502
PleI GAGTC 1 cut(s) 94
PluTI GGCGCC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 21
Psp1406I AACGTT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 503
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 90
RsaI GTAC 2 cut(s) 405, 491
RsaNI GTAC 2 cut(s) 404, 490
SacI GAGCTC 1 cut(s) 21
SatI GCNGC 2 cut(s) 120, 501
Sau3AI GATC 2 cut(s) 414, 482
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 3 cut(s) 383, 384, 505
SduI GDGCHC 2 cut(s) 21, 383
SetI ASST 9 cut(s) 11, 21, 133, 229, 321, 336, 358, 466, 477
SfoI GGCGCC 1 cut(s) 234
SmaI CCCGGG 1 cut(s) 384
Sse9I AATT 1 cut(s) 56
SsiI CCGC 4 cut(s) 117, 239, 341, 501
SspDI GGCGCC 1 cut(s) 232
SspMI CTAG 1 cut(s) 50
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 381, 382, 503
TaiI ACGT 4 cut(s) 321, 336, 466, 477
TaqI TCGA 5 cut(s) 15, 149, 191, 305, 481
TasI AATT 1 cut(s) 56
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 3 cut(s) 125, 307, 514
TscAI CASTG 1 cut(s) 207
TseI GCWGC 1 cut(s) 119
TspGWI ACGGA 6 cut(s) 177, 240, 252, 360, 366, 507
TspMI CCCGGG 1 cut(s) 382
TspRI CASTG 1 cut(s) 207
XmaI CCCGGG 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 453
XspI CTAG 1 cut(s) 50
ZraI GACGTC 2 cut(s) 319, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.