Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004890

Physical Location & Seq

Genomic Coordinates Forward (+)

12424303 .. 12426674

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAAAATGGGATTTGTCGAAAAAGTGAAGTCTAACGTTTTTTTGTATGCAAACTATGTGTTTGGTTGTTGTATAGGTGCAAGTCCGAAGTATATGAGCTCAGAGGCTAATGATTCACTGGGAAGTAAAAGCTCTTCTGTGTCAATCAGAACAAACCCAAGAACTGAAGGAGAGATCTTGCAATCTCCTAATCTCAAAAGTTTCACTTTTGCTGAGCTTAAAGCAGCAACTAGGAATTTTAGACCAGATAGTGTTCTTGGTGAAGGTGGTTTTGGTTCTGTTTTCAAAGGTTGGATTGATGAACAGACTCTTACTGCTTCTAAACCGGGAACCGGTGTGGTTATTGCTGTCAAAAAACTTAACCAAGATGGTTGGCAAGGTCACCAGGAATGGCTGGCGGAAGTGAATTACTTGGGGCAGTTTTCGCATCCTAATCTTGTGAAACTGATTGGTTATTGCTTAGAGGATGAGCATCGTCTTCTTGTTTATGAGTTCATGCCTCGTGGAAGCTTAGAGAATCATTTGTTCAGAAGAGGTTCTTATTTTCAACCTTTATCTTGGACTCTCCGGTTGAAAGTTGCTCTTGGTGCAGCGAAAGGTCTTGCGTTTCTTCATAACGCCGAGACTAGTGTCATATACCGCGATTTCAAAACGTCGAATATACTGCTTGATTCGGAGTACAATGCTAAGCTTTCTGATTTCGGGCTAGCTAAAGACGGTCCAACGGGTGATAAAAGCCATGTCTCTACGCGGATCATGGGTACTTACGGATACGCAGCTCCTGAATATCTTGCAACTGGTCATTTAACAACCAAAAGTGATGTCTATAGCTACGGTGTTGTGCTTTTGGAGGTGTTGTCTGGACGGAGAGCTGTAGACAAGAACCGTCCACCAGGAGAGCAAAAGCTAGTGGAATGGGCAAGACCGTTACTTGCTAACAAAAGGAAGTTATTCCGAGTTATCGATAACCGTCTACAAGATCAATACTCAATGGAAGAAGCTTGTAAAGTAGCTACTCTTGCGCTGAGATGCCTCACATTCGAGATAAAGCTGAGACCAAACATGAACGAGGTTGTTTCTCACCTCGAACACATCCAAACTTTGAATGAAGCAGGAGGAAGAAATATTGATATGGTCCAGAGGAGAATGCGTAGGAGAAGCGATAGTGTTGCTATCAACCAAAAACCAAATGCAGGTTTTGCTCGACAAACTGCTGTAGGCGTCATAGCTACTGCTTATCCACGCCCGTCTGATTCGCCTCTGTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

423

Amino Acids

47.22

Weight (kDa)

9.34

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	72 - 350	1.6e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	73 - 351	1.1e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07570 AT1G07570 AT1G07570 AT1G07570 AT2G28930 AT2G28930 AT2G28930
fragaria_vesca	FvH4_3g36200 FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
malus_domestica	MD00G1012300.v1.1 MD03G1092200.v1.1
prunus_persica	Prupe.6G076200_v2.0.a1
pyrus_communis	pycom03g07390 pycom11g08870
rosa_chinensis	RchiOBHm_Chr5g0064971
rosa_laevigata	RLG00000013060 RLG00000022531 RLG00000023667 RLG00000035745
rosa_multiflora	Rmu_sc0003352.1_g000018
rosa_roxburghii	Rroxscaffold_1G00016340
rosa_rugosa	Rorug05G0366800 Rorug05G0366900 Rorug05G0367000
rosa_samantha	Rh5AG425400 Rh5BG440300 Rh5CG462900
rosa_wichuraiana	Rw5G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1184
AccI	GTMKAC	2 cut(s)	876, 973
AccII	CGCG	2 cut(s)	642, 751
AciI	CCGC	3 cut(s)	398, 640, 751
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	1 cut(s)	761
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	186
AcyI	GRCGYC	1 cut(s)	1221
AfaI	GTAC	2 cut(s)	680, 763
AfiI	CCNNNNNNNGG	2 cut(s)	332, 1193
AgeI	ACCGGT	1 cut(s)	332
AgsI	TTSAA	5 cut(s)	286, 548, 574, 649, 1105
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	2 cut(s)	384, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	3 cut(s)	617, 748, 1048
AlwI	GGATC	1 cut(s)	761
AlwNI	CAGNNNCTG	1 cut(s)	782
ApeKI	GCWGC	3 cut(s)	224, 590, 776
ApoI	RAATTY	1 cut(s)	235
ArsI	GACNNNNNNTTYG	2 cut(s)	807, 839
AsiGI	ACCGGT	1 cut(s)	332
Asp700I	GAANNNNTTC	2 cut(s)	535, 950
AspLEI	GCGC	1 cut(s)	1024
AspS9I	GGNCC	2 cut(s)	719, 1135
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	4 cut(s)	272, 374, 740, 1073
AsuNHI	GCTAGC	1 cut(s)	706
AvaII	GGWCC	2 cut(s)	719, 1135
BanII	GRGCYC	1 cut(s)	101
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
BauI	CACGAG	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	3 cut(s)	236, 602, 788
BccI	CCATC	1 cut(s)	362
BcgI	CGANNNNNNTGC	4 cut(s)	646, 680, 1151, 1185
BciT130I	CCWGG	2 cut(s)	386, 894
BciVI	GTATCC	1 cut(s)	764
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	617, 748, 1048
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	4 cut(s)	231, 627, 707, 908
BfmI	CTRYAG	3 cut(s)	826, 873, 1215
BfuAI	ACCTGC	1 cut(s)	1184
BfuI	GTATCC	1 cut(s)	764
BglII	AGATCT	1 cut(s)	174
BisI	GCNGC	3 cut(s)	225, 591, 777
BlpI	GCTNAGC	2 cut(s)	213, 687
BlsI	GCNGC	3 cut(s)	226, 592, 778
Bme1390I	CCNGG	3 cut(s)	327, 386, 894
Bme18I	GGWCC	2 cut(s)	719, 1135
BmgT120I	GGNCC	2 cut(s)	719, 1135
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	3 cut(s)	327, 386, 894
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	3 cut(s)	436, 481, 1019
BmtI	GCTAGC	1 cut(s)	710
BmuI	ACTGGG	1 cut(s)	128
BoxI	GACNNNNGTC	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	470
Bpu1102I	GCTNAGC	2 cut(s)	213, 687
BpuMI	CCSGG	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	963
BsaBI	GATNNNNATC	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	1221
BsaI	GGTCTC	1 cut(s)	1048
BsaWI	WCCGGW	2 cut(s)	332, 567
BsaXI	ACNNNNNCTCC	4 cut(s)	842, 872, 1135, 1165
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 1193
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	123, 802
Bse8I	GATNNNNATC	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	386, 894
BseCI	ATCGAT	1 cut(s)	963
BseGI	GGATG	3 cut(s)	427, 472, 1092
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	2 cut(s)	332, 1193
BseMII	CTCAG	4 cut(s)	114, 204, 1016, 1043
BseNI	ACTGG	2 cut(s)	123, 802
BseRI	GAGGAG	1 cut(s)	1156
BseXI	GCAGC	3 cut(s)	236, 602, 788
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	2 cut(s)	642, 751
BshTI	ACCGGT	1 cut(s)	332
BshVI	ATCGAT	1 cut(s)	963
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	3 cut(s)	326, 333, 568
BslI	CCNNNNNNNGG	2 cut(s)	332, 1193
BsmAI	GTCTC	3 cut(s)	617, 748, 1048
BsmI	GAATGC	1 cut(s)	1152
Bso31I	GGTCTC	1 cut(s)	1048
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	3 cut(s)	174, 753, 979
Bsp1720I	GCTNAGC	2 cut(s)	213, 687
BspACI	CCGC	3 cut(s)	398, 640, 751
BspCNI	CTCAG	4 cut(s)	113, 205, 1017, 1044
BspDI	ATCGAT	1 cut(s)	963
BspFNI	CGCG	2 cut(s)	642, 751
BspLI	GGNNCC	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	1184
BspOI	GCTAGC	1 cut(s)	710
BspPI	GGATC	1 cut(s)	761
BspQI	GCTCTTC	1 cut(s)	139
BspTNI	GGTCTC	1 cut(s)	1048
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	123, 802
BssAI	RCCGGY	1 cut(s)	332
BssMI	GATC	3 cut(s)	174, 753, 979
BssNI	GRCGYC	1 cut(s)	1221
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	386, 894
Bst4CI	ACNGT	5 cut(s)	719, 836, 887, 927, 971
Bst6I	CTCTTC	2 cut(s)	139, 526
BstACI	GRCGYC	1 cut(s)	1221
BstAPI	GCANNNNNTGC	1 cut(s)	1199
BstC8I	GCNNGC	2 cut(s)	396, 708
BstDEI	CTNAG	7 cut(s)	100, 213, 460, 511, 687, 1025, 1052
BstEII	GGTNACC	1 cut(s)	380
BstF5I	GGATG	3 cut(s)	427, 472, 1092
BstFNI	CGCG	2 cut(s)	642, 751
BstHHI	GCGC	1 cut(s)	1024
BstKTI	GATC	3 cut(s)	177, 756, 982
BstMAI	GTCTC	3 cut(s)	617, 748, 1048
BstMBI	GATC	3 cut(s)	174, 753, 979
BstMWI	GCNNNNNNNGC	4 cut(s)	424, 587, 1019, 1199
BstNI	CCWGG	2 cut(s)	386, 894
BstPAI	GACNNNNGTC	1 cut(s)	629
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	325, 384, 892
BstSFI	CTRYAG	3 cut(s)	826, 873, 1215
BstUI	CGCG	2 cut(s)	642, 751
BstV1I	GCAGC	3 cut(s)	236, 602, 788
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	963
BsuI	GTATCC	1 cut(s)	764
BsuTUI	ATCGAT	1 cut(s)	963
BtsCI	GGATG	3 cut(s)	427, 472, 1092
BtsIMutI	CAGTG	1 cut(s)	116
BveI	ACCTGC	1 cut(s)	1184
Cac8I	GCNNGC	2 cut(s)	396, 708
CaiI	CAGNNNCTG	1 cut(s)	782
CfoI	GCGC	1 cut(s)	1024
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	719, 1135
ClaI	ATCGAT	1 cut(s)	963
CseI	GACGC	1 cut(s)	1210
Csp6I	GTAC	2 cut(s)	679, 762
CspAI	ACCGGT	1 cut(s)	332
CviAII	CATG	4 cut(s)	496, 740, 757, 1063
CviQI	GTAC	2 cut(s)	679, 762
DdeI	CTNAG	7 cut(s)	100, 213, 460, 511, 687, 1025, 1052
DpnI	GATC	3 cut(s)	176, 755, 981
DpnII	GATC	3 cut(s)	174, 753, 979
Eam1104I	CTCTTC	2 cut(s)	139, 526
EarI	CTCTTC	2 cut(s)	139, 526
EciI	GGCGGA	1 cut(s)	413
Ecl136II	GAGCTC	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	101
Eco31I	GGTCTC	1 cut(s)	1048
Eco47I	GGWCC	2 cut(s)	719, 1135
Eco53kI	GAGCTC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	186
Eco91I	GGTNACC	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	99
EcoO65I	GGTNACC	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	384, 892
EcoT38I	GRGCYC	1 cut(s)	101
FaeI	CATG	4 cut(s)	499, 743, 760, 1066
FalI	AAGNNNNNCTT	6 cut(s)	190, 222, 523, 555, 567, 599
FatI	CATG	4 cut(s)	495, 739, 756, 1062
FblI	GTMKAC	2 cut(s)	876, 973
Fnu4HI	GCNGC	3 cut(s)	225, 591, 777
FokI	GGATG	3 cut(s)	414, 479, 1079
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	225, 591, 777
FspBI	CTAG	4 cut(s)	231, 627, 707, 908
GlaI	GCGC	1 cut(s)	1023
GluI	GCNGC	3 cut(s)	225, 591, 777
HapII	CCGG	3 cut(s)	326, 333, 568
HgaI	GACGC	1 cut(s)	1210
HhaI	GCGC	1 cut(s)	1024
Hin1I	GRCGYC	1 cut(s)	1221
Hin1II	CATG	4 cut(s)	499, 743, 760, 1066
Hin6I	GCGC	1 cut(s)	1022
HinP1I	GCGC	1 cut(s)	1022
HindIII	AAGCTT	3 cut(s)	508, 689, 999
HinfI	GANTC	6 cut(s)	113, 307, 517, 562, 671, 1253
HpaII	CCGG	3 cut(s)	326, 333, 568
HphI	GGTGA	4 cut(s)	272, 374, 740, 1073
Hpy166II	GTNNAC	3 cut(s)	877, 890, 974
Hpy188I	TCNGA	8 cut(s)	87, 103, 149, 530, 676, 697, 956, 1252
Hpy188III	TCNNGA	4 cut(s)	782, 861, 1042, 1138
Hpy8I	GTNNAC	3 cut(s)	877, 890, 974
Hpy99I	CGWCG	1 cut(s)	658
HpyAV	CCTTC	2 cut(s)	161, 257
HpyCH4III	ACNGT	5 cut(s)	719, 836, 887, 927, 971
HpyCH4IV	ACGT	2 cut(s)	36, 653
HpyCH4V	TGCA	6 cut(s)	50, 80, 181, 590, 794, 1193
HpyF10VI	GCNNNNNNNGC	4 cut(s)	424, 587, 1019, 1199
HpyF3I	CTNAG	7 cut(s)	100, 213, 460, 511, 687, 1025, 1052
HpySE526I	ACGT	2 cut(s)	36, 653
Hsp92I	GRCGYC	1 cut(s)	1221
Hsp92II	CATG	4 cut(s)	499, 743, 760, 1066
HspAI	GCGC	1 cut(s)	1022
Kzo9I	GATC	3 cut(s)	174, 753, 979
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	784
Lsp1109I	GCAGC	3 cut(s)	236, 602, 788
LweI	GCATC	3 cut(s)	436, 481, 1019
MaeI	CTAG	4 cut(s)	231, 627, 707, 908
MaeII	ACGT	2 cut(s)	36, 653
MaeIII	GTNAC	2 cut(s)	380, 927
MalI	GATC	3 cut(s)	176, 755, 981
MboI	GATC	3 cut(s)	174, 753, 979
MboII	GAAGA	6 cut(s)	126, 470, 543, 602, 1007, 1131
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	2 cut(s)	235, 406
MlyI	GAGTC	2 cut(s)	301, 556
MmeI	TCCRAC	2 cut(s)	272, 746
MroXI	GAANNNNTTC	2 cut(s)	535, 950
MseI	TTAA	3 cut(s)	219, 360, 806
MspI	CCGG	3 cut(s)	326, 333, 568
MspR9I	CCNGG	3 cut(s)	327, 386, 894
Mva1269I	GAATGC	1 cut(s)	1152
MvaI	CCWGG	2 cut(s)	386, 894
MvnI	CGCG	2 cut(s)	642, 751
MwoI	GCNNNNNNNGC	4 cut(s)	424, 587, 1019, 1199
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	3 cut(s)	174, 753, 979
NheI	GCTAGC	1 cut(s)	706
NlaIII	CATG	4 cut(s)	499, 743, 760, 1066
NlaIV	GGNNCC	1 cut(s)	331
NmeAIII	GCCGAG	1 cut(s)	646
NmuCI	GTSAC	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	139
PctI	GAATGC	1 cut(s)	1152
PdmI	GAANNNNTTC	2 cut(s)	535, 950
PfeI	GAWTC	4 cut(s)	113, 517, 671, 1253
PinAI	ACCGGT	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	226, 592, 778
PleI	GAGTC	2 cut(s)	301, 556
PpsI	GAGTC	2 cut(s)	301, 556
PshAI	GACNNNNGTC	1 cut(s)	629
Psp124BI	GAGCTC	1 cut(s)	101
Psp1406I	AACGTT	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	384, 892
PspEI	GGTNACC	1 cut(s)	380
PspGI	CCWGG	2 cut(s)	384, 892
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	2 cut(s)	719, 1135
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	2 cut(s)	680, 763
RsaNI	GTAC	2 cut(s)	679, 762
SacI	GAGCTC	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	219, 360, 806
SatI	GCNGC	3 cut(s)	225, 591, 777
Sau3AI	GATC	3 cut(s)	174, 753, 979
Sau96I	GGNCC	2 cut(s)	719, 1135
SchI	GAGTC	2 cut(s)	301, 556
ScrFI	CCNGG	3 cut(s)	327, 386, 894
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	3 cut(s)	436, 481, 1019
SfcI	CTRYAG	3 cut(s)	826, 873, 1215
SinI	GGWCC	2 cut(s)	719, 1135
SpeI	ACTAGT	1 cut(s)	626
Sse9I	AATT	2 cut(s)	235, 406
SsiI	CCGC	3 cut(s)	398, 640, 751
SspI	AATATT	1 cut(s)	1126
SspMI	CTAG	4 cut(s)	231, 627, 707, 908
SstI	GAGCTC	1 cut(s)	101
StyD4I	CCNGG	3 cut(s)	325, 384, 892
TaaI	ACNGT	5 cut(s)	719, 836, 887, 927, 971
TaiI	ACGT	2 cut(s)	39, 656
TaqI	TCGA	6 cut(s)	18, 656, 963, 1041, 1086, 1204
TasI	AATT	2 cut(s)	235, 406
TatI	WGTACW	1 cut(s)	678
TfiI	GAWTC	4 cut(s)	113, 517, 671, 1253
Tru1I	TTAA	3 cut(s)	219, 360, 806
Tru9I	TTAA	3 cut(s)	219, 360, 806
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	3 cut(s)	224, 590, 776
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	6 cut(s)	17, 315, 484, 602, 1079, 1122
TspGWI	ACGGA	2 cut(s)	783, 880
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	719, 1135
XapI	RAATTY	1 cut(s)	235
XmiI	GTMKAC	2 cut(s)	876, 973
XmnI	GAANNNNTTC	2 cut(s)	535, 950
XspI	CTAG	4 cut(s)	231, 627, 707, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.