Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004890

Physical Location & Seq

Genomic Coordinates Forward (+)

48975573 .. 48976673

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0366900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGTAGAAGACTTCGACATGACTGATGGGGATTATTCTTACTCTGCTGGTAAGCATGGTCTCAACGTCTCCTTTTCTCAGAAAATTCATAATAAACTCGATTATGACTGGCGTAGTGCTGTAATTGTCAAATTGATGGGGAAGCCAAATTCTACTAATGCGTTTGATTTTATGCTAAGGGGCTTAAGGAGAAAATGGCAGCTAAAGGGTGGTTGGCATTTGATTGATCTTCCTAATGACTATTTCATTGTTAAATTCAACCTTGATGAAGATATGAATCAGGTTCTTTGTGGTGGACCTTGGATCCTAGCTGGGCAAACATTGGTGGTGCAGAAATGGAGACCTGGGTTTGATCCAGCTGAGGAGAAAATAAGTCGAATGGCTTTATGGGTAAGACTATGTGGTTTGCCTGTGAAATACTTTAAGGAATTCACAATTGCTAATATTGGTAGGATAATTGGGGATGTTGTGAAGATTGATCAGGTGACTCTTGGCCAAGCTAGAGGTAAATTTGCCAGTGTCTGTATTGAAGTTGACCTGAGTAAACCTTTGAGACCATTTGTAGAAGTCGAGGGTGTGGCTTATGGAGTTGTCTATGAAGGAATTTCTATGATCTGTTTTGAATGCGGCTGCTATGGTCATGTTAAGGATAAATGTCCCCATATTCACACTGAGAATGCTATTGGCGCAAATGCTTCTGCGAATGCTAAACCTACATCCAATGATGGTAGTGGTCCCGATGATTCCAATGATAATACTCAGCAAGATATGGATACAGCCCAAGTGAATATGGTTCCCTCTCCGCCCGTCATGAAGAAGGACATGGGTCCTTGGATGTTGATGACATATAAGAATAAAAGGAGAACTAATGCTGACAATGGGGACGTTAAGAAAGTTCAAGGCTCTGGATCTCGTTTTGCAGTGCTTCAGGATAGGCCTGGGATCGGGTCGGTTCTAGTTAAAAAGTGGTGGAACCGACAAGAAAAACTAACTCTTAAAATCGGTTCGGTTATGATAACAATTTTTGAAGAACCGTTTAGGAACCGAACCGACTCTAAACGGTTCGGTTCCTGCCTTTTCCCGGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

363

Amino Acids

40.79

Weight (kDa)

8.76

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	36 - 121	4.6e-16	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07570 AT1G07570 AT1G07570 AT1G07570 AT2G28930 AT2G28930 AT2G28930
fragaria_vesca	FvH4_3g36200 FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
malus_domestica	MD00G1012300.v1.1 MD03G1092200.v1.1
prunus_persica	Prupe.6G076200_v2.0.a1
pyrus_communis	pycom03g07390 pycom11g08870
rosa_chinensis	RchiOBHm_Chr5g0064971
rosa_laevigata	RLG00000013060 RLG00000022531 RLG00000023667 RLG00000035745
rosa_multiflora	Rmu_sc0003352.1_g000018
rosa_roxburghii	Rroxscaffold_1G00016340
rosa_rugosa	Rorug05G0366800 Rorug05G0366900 Rorug05G0367000
rosa_samantha	Rh5AG425400 Rh5BG440300 Rh5CG462900
rosa_wichuraiana	Rw5G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	627, 803
AclWI	GGATC	5 cut(s)	298, 311, 347, 916, 950
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	6 cut(s)	84, 148, 254, 428, 509, 603
AcuI	CTGAAG	1 cut(s)	911
AfiI	CCNNNNNNNGG	2 cut(s)	944, 1081
AflII	CTTAAG	1 cut(s)	184
AgsI	TTSAA	5 cut(s)	259, 530, 623, 899, 1028
AjnI	CCWGG	2 cut(s)	343, 937
AluBI	AGCT	4 cut(s)	202, 311, 359, 500
AluI	AGCT	4 cut(s)	202, 311, 359, 500
Alw26I	GTCTC	4 cut(s)	65, 73, 334, 547
AlwI	GGATC	5 cut(s)	298, 311, 347, 916, 950
AlwNI	CAGNNNCTG	1 cut(s)	522
AoxI	GGCC	2 cut(s)	493, 935
ApeKI	GCWGC	2 cut(s)	199, 630
ApoI	RAATTY	6 cut(s)	84, 148, 254, 428, 509, 603
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	3 cut(s)	296, 734, 827
AsuC2I	CCSGG	1 cut(s)	1082
AsuHPI	GGTGA	1 cut(s)	496
AvaII	GGWCC	3 cut(s)	296, 734, 827
BalI	TGGCCA	1 cut(s)	495
BamHI	GGATCC	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	211, 617
BccI	CCATC	3 cut(s)	20, 130, 719
BciT130I	CCWGG	2 cut(s)	345, 939
BciVI	GTATCC	1 cut(s)	766
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	1 cut(s)	1082
BcoDI	GTCTC	4 cut(s)	65, 73, 334, 547
BfaI	CTAG	3 cut(s)	308, 501, 956
BfrI	CTTAAG	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	766
BisI	GCNGC	3 cut(s)	200, 628, 631
BlsI	GCNGC	3 cut(s)	201, 629, 632
Bme1390I	CCNGG	3 cut(s)	345, 939, 1082
Bme18I	GGWCC	3 cut(s)	296, 734, 827
BmgT120I	GGNCC	3 cut(s)	296, 734, 827
BmiI	GGNNCC	8 cut(s)	305, 736, 795, 828, 974, 1043, 1069, 1086
BmrFI	CCNGG	3 cut(s)	345, 939, 1082
BoxI	GACNNNNGTC	1 cut(s)	825
BpiI	GAAGAC	1 cut(s)	15
Bpu10I	CCTNAGC	2 cut(s)	176, 360
BpuMI	CCSGG	1 cut(s)	1082
BsaBI	GATNNNNATC	1 cut(s)	276
BsaI	GGTCTC	3 cut(s)	65, 334, 547
BsaJI	CCNNGG	4 cut(s)	299, 344, 830, 938
Bsc4I	CCNNNNNNNGG	2 cut(s)	944, 1081
Bse1I	ACTGG	2 cut(s)	113, 516
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	345, 939
BseDI	CCNNGG	4 cut(s)	299, 344, 830, 938
BseGI	GGATG	3 cut(s)	469, 716, 840
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	944, 1081
BseMII	CTCAG	5 cut(s)	92, 351, 530, 663, 773
BseNI	ACTGG	2 cut(s)	113, 516
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	211, 617
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	350
BshFI	GGCC	2 cut(s)	495, 937
BsiSI	CCGG	1 cut(s)	1082
BslFI	GGGAC	3 cut(s)	642, 720, 896
BslI	CCNNNNNNNGG	2 cut(s)	944, 1081
BsmAI	GTCTC	4 cut(s)	65, 73, 334, 547
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	3 cut(s)	642, 720, 896
BsmI	GAATGC	3 cut(s)	629, 682, 709
BsnI	GGCC	2 cut(s)	495, 937
Bso31I	GGTCTC	3 cut(s)	65, 334, 547
Bsp143I	GATC	7 cut(s)	226, 303, 352, 478, 612, 908, 942
BspACI	CCGC	2 cut(s)	627, 803
BspANI	GGCC	2 cut(s)	495, 937
BspCNI	CTCAG	5 cut(s)	91, 352, 531, 664, 772
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	8 cut(s)	305, 736, 795, 828, 974, 1043, 1069, 1086
BspPI	GGATC	5 cut(s)	298, 311, 347, 916, 950
BspTI	CTTAAG	1 cut(s)	184
BspTNI	GGTCTC	3 cut(s)	65, 334, 547
BsrI	ACTGG	2 cut(s)	113, 516
BssECI	CCNNGG	4 cut(s)	299, 344, 830, 938
BssMI	GATC	7 cut(s)	226, 303, 352, 478, 612, 908, 942
BssT1I	CCWWGG	2 cut(s)	299, 830
Bst2UI	CCWGG	2 cut(s)	345, 939
Bst4CI	ACNGT	2 cut(s)	1035, 1062
BstAFI	CTTAAG	1 cut(s)	184
BstDEI	CTNAG	6 cut(s)	78, 176, 360, 539, 672, 759
BstF5I	GGATG	3 cut(s)	469, 716, 840
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	7 cut(s)	229, 306, 355, 481, 615, 911, 945
BstMAI	GTCTC	4 cut(s)	65, 73, 334, 547
BstMBI	GATC	7 cut(s)	226, 303, 352, 478, 612, 908, 942
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNI	CCWGG	2 cut(s)	345, 939
BstPAI	GACNNNNGTC	1 cut(s)	825
BstSCI	CCNGG	3 cut(s)	343, 937, 1080
BstV1I	GCAGC	2 cut(s)	211, 617
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	2 cut(s)	303, 908
BstYI	RGATCY	2 cut(s)	303, 908
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	2 cut(s)	495, 937
BtsCI	GGATG	3 cut(s)	469, 716, 840
BtsI	GCAGTG	1 cut(s)	927
BtsIMutI	CAGTG	3 cut(s)	523, 669, 927
CaiI	CAGNNNCTG	1 cut(s)	522
CciI	TCATGA	1 cut(s)	810
CfoI	GCGC	1 cut(s)	689
Cfr13I	GGNCC	3 cut(s)	296, 734, 827
CviAII	CATG	5 cut(s)	19, 56, 641, 811, 823
DdeI	CTNAG	6 cut(s)	78, 176, 360, 539, 672, 759
DpnI	GATC	7 cut(s)	228, 305, 354, 480, 614, 910, 944
DpnII	GATC	7 cut(s)	226, 303, 352, 478, 612, 908, 942
EaeI	YGGCCR	1 cut(s)	493
EciI	GGCGGA	1 cut(s)	792
Eco130I	CCWWGG	2 cut(s)	299, 830
Eco147I	AGGCCT	1 cut(s)	937
Eco31I	GGTCTC	3 cut(s)	65, 334, 547
Eco47I	GGWCC	3 cut(s)	296, 734, 827
Eco57I	CTGAAG	1 cut(s)	911
EcoO109I	RGGNCCY	1 cut(s)	827
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	2 cut(s)	343, 937
EcoT14I	CCWWGG	2 cut(s)	299, 830
ErhI	CCWWGG	2 cut(s)	299, 830
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	5 cut(s)	22, 59, 644, 814, 826
FaqI	GGGAC	3 cut(s)	642, 720, 896
FatI	CATG	5 cut(s)	18, 55, 640, 810, 822
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	200, 628, 631
FokI	GGATG	3 cut(s)	476, 703, 847
Fsp4HI	GCNGC	3 cut(s)	200, 628, 631
FspBI	CTAG	3 cut(s)	308, 501, 956
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	3 cut(s)	200, 628, 631
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	495, 937
HapII	CCGG	1 cut(s)	1082
HhaI	GCGC	1 cut(s)	689
Hin1II	CATG	5 cut(s)	22, 59, 644, 814, 826
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	4 cut(s)	277, 487, 743, 1052
HpaII	CCGG	1 cut(s)	1082
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	3 cut(s)	296, 535, 545
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	4 cut(s)	737, 811, 906, 929
Hpy8I	GTNNAC	3 cut(s)	296, 535, 545
HpyAV	CCTTC	2 cut(s)	593, 811
HpyCH4III	ACNGT	2 cut(s)	1035, 1062
HpyCH4IV	ACGT	2 cut(s)	66, 885
HpyCH4V	TGCA	2 cut(s)	331, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	6 cut(s)	78, 176, 360, 539, 672, 759
HpySE526I	ACGT	2 cut(s)	66, 885
Hsp92II	CATG	5 cut(s)	22, 59, 644, 814, 826
HspAI	GCGC	1 cut(s)	687
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	7 cut(s)	226, 303, 352, 478, 612, 908, 942
Lsp1109I	GCAGC	2 cut(s)	211, 617
MaeI	CTAG	3 cut(s)	308, 501, 956
MaeII	ACGT	2 cut(s)	66, 885
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	7 cut(s)	228, 305, 354, 480, 614, 910, 944
MboI	GATC	7 cut(s)	226, 303, 352, 478, 612, 908, 942
MboII	GAAGA	6 cut(s)	20, 221, 281, 484, 826, 1040
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	2 cut(s)	303, 908
MlsI	TGGCCA	1 cut(s)	495
MluNI	TGGCCA	1 cut(s)	495
MlyI	GAGTC	2 cut(s)	481, 1046
MnlI	CCTC	4 cut(s)	355, 497, 565, 808
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	8 cut(s)	185, 252, 423, 645, 888, 960, 996, 1090
Msp20I	TGGCCA	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	359
MspCI	CTTAAG	1 cut(s)	184
MspI	CCGG	1 cut(s)	1082
MspR9I	CCNGG	3 cut(s)	345, 939, 1082
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	3 cut(s)	629, 682, 709
MvaI	CCWGG	2 cut(s)	345, 939
MwoI	GCNNNNNNNGC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	1082
NdeII	GATC	7 cut(s)	226, 303, 352, 478, 612, 908, 942
NlaIII	CATG	5 cut(s)	22, 59, 644, 814, 826
NlaIV	GGNNCC	8 cut(s)	305, 736, 795, 828, 974, 1043, 1069, 1086
NmuCI	GTSAC	1 cut(s)	484
PagI	TCATGA	1 cut(s)	810
PceI	AGGCCT	1 cut(s)	937
PctI	GAATGC	3 cut(s)	629, 682, 709
PfeI	GAWTC	2 cut(s)	277, 743
PkrI	GCNGC	3 cut(s)	201, 629, 632
PleI	GAGTC	2 cut(s)	481, 1046
PpsI	GAGTC	2 cut(s)	481, 1046
PpuMI	RGGWCCY	1 cut(s)	827
PshAI	GACNNNNGTC	1 cut(s)	825
Psp5II	RGGWCCY	1 cut(s)	827
Psp6I	CCWGG	2 cut(s)	343, 937
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	2 cut(s)	343, 937
PspN4I	GGNNCC	8 cut(s)	305, 736, 795, 828, 974, 1043, 1069, 1086
PspPI	GGNCC	3 cut(s)	296, 734, 827
PspPPI	RGGWCCY	1 cut(s)	827
PstNI	CAGNNNCTG	1 cut(s)	522
PsuI	RGATCY	2 cut(s)	303, 908
PvuII	CAGCTG	1 cut(s)	359
SaqAI	TTAA	8 cut(s)	185, 252, 423, 645, 888, 960, 996, 1090
SatI	GCNGC	3 cut(s)	200, 628, 631
Sau3AI	GATC	7 cut(s)	226, 303, 352, 478, 612, 908, 942
Sau96I	GGNCC	3 cut(s)	296, 734, 827
SchI	GAGTC	2 cut(s)	481, 1046
ScrFI	CCNGG	3 cut(s)	345, 939, 1082
SinI	GGWCC	3 cut(s)	296, 734, 827
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SseBI	AGGCCT	1 cut(s)	937
SsiI	CCGC	2 cut(s)	627, 803
SspI	AATATT	1 cut(s)	445
SspMI	CTAG	3 cut(s)	308, 501, 956
StuI	AGGCCT	1 cut(s)	937
StyD4I	CCNGG	3 cut(s)	343, 937, 1080
StyI	CCWWGG	2 cut(s)	299, 830
TaaI	ACNGT	2 cut(s)	1035, 1062
TaiI	ACGT	2 cut(s)	69, 888
TaqI	TCGA	4 cut(s)	15, 99, 376, 570
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	2 cut(s)	277, 743
Tru1I	TTAA	8 cut(s)	185, 252, 423, 645, 888, 960, 996, 1090
Tru9I	TTAA	8 cut(s)	185, 252, 423, 645, 888, 960, 996, 1090
TscAI	CASTG	3 cut(s)	523, 676, 927
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	2 cut(s)	199, 630
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	6 cut(s)	77, 235, 282, 290, 612, 827
TspRI	CASTG	3 cut(s)	523, 676, 927
Vha464I	CTTAAG	1 cut(s)	184
VpaK11BI	GGWCC	3 cut(s)	296, 734, 827
XapI	RAATTY	6 cut(s)	84, 148, 254, 428, 509, 603
XspI	CTAG	3 cut(s)	308, 501, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.