Rw5G039970
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
70596585 .. 70599034
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G039970.1

Sequence Viewer

Length: 1227 bp
ATGGGGGTCTGCTGGAGCGCCCAGATCAAAGCTGAGAGCCCGTTAAACACAGGTTCAAAGTTTGTTAGTACTGATGGCAGTACAAGCAGCAAGGTCTCATCATTTTCAGCACCTCCAACTCCTCGGACGGAGGGTGAGATCTTGCAGTCAACCAATTTGAGGAGCTTCAGTTTCTCTGACCTCAAATTGGCCACCAGGAATTTCCGTCCTGATAGTGTGTTAGGAGAAGGCGGCTTTGGTTCTGTTTTTAAAGGGTGGATTGATGAAAATTCATTTACAGCTGCAAAGCCTGGGACTGGCATAGTTTTGGCTGTGAAACGGCTTAACCAAGAAAGTTTCCAGGGTCATAGGGAGTGGTTGGCAGAAGTGAATTATTTGGGGCAGTTCCATCATCCTAATCTTGTGAAACTAATTGGCTATTGCTTGGAAGATGAGCAGCGCCTTTTGGTATATGAATTCATGCCTCGAGGCAGCCTGGAAAATCATTTGTTCAGGAGTAAGGGTTCTTATTTTCAACCTCTTTCTTGGACCCTCCGGATGAAGGTTGCCCTTGGTGCTGCAAAGGGGCTGGCCTTTTTGCATAGTGCTGAAACAAGGGTGATATATCGAGACTTCAAGACGTCTAATATCCTACTTGATTCGAACTACAATGCAAAGCTGTCAGATTTTGGCTTGGCCAAGGATGGGCCAACAGGTGATAAAAGCCACGTCTCTACTAGGGTGATGGGCACATATGGATATGCAGCCCCAGAATATCTAGCCACAGGTCATCTTACTGCCAAGAGTGATATCTATAGTTTTGGAGTTGTCTTATTGGAGATGTTATCTGGCCGGAGAGCAGTTGACAAGAATCGGCCATCTGGGGAACACAATCTAGTTGAGTGGGCTAAACCCTTCCTGGCAAACAAGCGCAAGATCTTTCGCGTCATAGACAACCGTTTAGAAGGCCAGTATTCAATGGATGGAGCTTACAAGGCAGCTACCCTCGCATTACGATGCCTGTGCACAGAATCCAAGCTCAGGCCAACCATGGATGAGGTCGTCAAAGCACTGGAGCAACTGCAGGATTCTAATGTCCCCACCAGCAATCAAATCCATGCACACAGGATGCGCAGGCGAAGTGCAGATGACGCTAGCAAAGCAAGGCGTGCATCTATAGAAGAAGCTAACAAAGCAAGGAATACTGTTGCTTATCCTCGGCCATCTGCTTCGCCCCTATATGCTTGA

Protein Analysis

408

Amino Acids

45.32

Weight (kDa)

9.47

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 71 - 349 1.2e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 72 - 351 7.1e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 623
AbsI CCTCGAGG 1 cut(s) 465
Acc16I TGCGCA 1 cut(s) 1112
AccII CGCG 1 cut(s) 924
AccIII TCCGGA 1 cut(s) 534
AciI CCGC 1 cut(s) 231
AcoI YGGCCR 5 cut(s) 189, 675, 829, 854, 1199
AcsI RAATTY 3 cut(s) 199, 268, 455
AcuI CTGAAG 1 cut(s) 151
AcyI GRCGYC 1 cut(s) 620
AfaI GTAC 2 cut(s) 70, 82
AfiI CCNNNNNNNGG 6 cut(s) 159, 187, 296, 541, 684, 1020
AgsI TTSAA 4 cut(s) 57, 515, 616, 957
AjiI CACGTC 1 cut(s) 709
AjnI CCWGG 5 cut(s) 194, 289, 339, 474, 897
AjuI GAANNNNNNNTTGG 2 cut(s) 219, 251
AloI GAACNNNNNNTCC 2 cut(s) 487, 519
AluBI AGCT 8 cut(s) 32, 165, 281, 658, 968, 980, 1018, 1166
AluI AGCT 8 cut(s) 32, 165, 281, 658, 968, 980, 1018, 1166
Alw21I GWGCWC 1 cut(s) 1007
Alw26I GTCTC 3 cut(s) 100, 603, 715
Alw44I GTGCAC 1 cut(s) 1003
Ama87I CYCGRG 1 cut(s) 465
Aor13HI TCCGGA 1 cut(s) 534
AoxI GGCC 9 cut(s) 189, 570, 675, 686, 829, 854, 946, 1022, 1199
ApaLI GTGCAC 1 cut(s) 1003
ApeKI GCWGC 7 cut(s) 87, 281, 436, 471, 557, 743, 977
ApoI RAATTY 3 cut(s) 199, 268, 455
AspLEI GCGC 4 cut(s) 20, 441, 912, 1113
AspS9I GGNCC 2 cut(s) 528, 686
AsuHPI GGTGA 4 cut(s) 146, 610, 707, 733
AsuII TTCGAA 1 cut(s) 641
AsuNHI GCTAGC 1 cut(s) 1133
AvaI CYCGRG 1 cut(s) 465
AvaII GGWCC 1 cut(s) 528
BaeGI GKGCMC 2 cut(s) 731, 1007
BalI TGGCCA 2 cut(s) 191, 677
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 1007
BbvI GCAGC 7 cut(s) 99, 268, 448, 483, 544, 755, 989
BccI CCATC 7 cut(s) 68, 396, 677, 718, 865, 956, 1210
BceAI ACGGC 1 cut(s) 335
BcgI CGANNNNNNTGC 2 cut(s) 984, 1018
BciT130I CCWGG 5 cut(s) 196, 291, 341, 476, 899
BcoDI GTCTC 3 cut(s) 100, 603, 715
BfaI CTAG 4 cut(s) 717, 758, 875, 1134
BfmI CTRYAG 3 cut(s) 793, 1061, 1155
BfoI RGCGCY 2 cut(s) 21, 442
BglII AGATCT 2 cut(s) 138, 915
BisI GCNGC 8 cut(s) 88, 232, 282, 437, 472, 558, 744, 978
BlsI GCNGC 8 cut(s) 89, 233, 283, 438, 473, 559, 745, 979
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 5 cut(s) 196, 291, 341, 476, 899
Bme18I GGWCC 1 cut(s) 528
BmeT110I CYCGRG 1 cut(s) 465
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 2 cut(s) 528, 686
BmiI GGNNCC 1 cut(s) 530
BmrFI CCNGG 5 cut(s) 196, 291, 341, 476, 899
BmsI GCATC 3 cut(s) 986, 1098, 1160
BmtI GCTAGC 1 cut(s) 1137
BpmI CTGGAG 2 cut(s) 34, 1073
Bpu10I CCTNAGC 1 cut(s) 1019
Bpu14I TTCGAA 1 cut(s) 641
BsaHI GRCGYC 1 cut(s) 620
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 7 cut(s) 122, 290, 340, 550, 678, 1029, 1196
BsaWI WCCGGW 1 cut(s) 534
BsaXI ACNNNNNCTCC 4 cut(s) 154, 184, 487, 517
Bsc4I CCNNNNNNNGG 6 cut(s) 159, 187, 296, 541, 684, 1020
Bse1I ACTGG 3 cut(s) 301, 949, 1056
BseAI TCCGGA 1 cut(s) 534
BseBI CCWGG 5 cut(s) 196, 291, 341, 476, 899
BseDI CCNNGG 7 cut(s) 122, 290, 340, 550, 678, 1029, 1196
BseGI GGATG 6 cut(s) 391, 543, 688, 967, 1039, 1113
BseLI CCNNNNNNNGG 6 cut(s) 159, 187, 296, 541, 684, 1020
BseMII CTCAG 2 cut(s) 24, 1033
BseNI ACTGG 3 cut(s) 301, 949, 1056
BseRI GAGGAG 2 cut(s) 111, 175
BseSI GKGCMC 2 cut(s) 731, 1007
BseXI GCAGC 7 cut(s) 99, 268, 448, 483, 544, 755, 989
BsgI GTGCAG 1 cut(s) 1143
Bsh1236I CGCG 1 cut(s) 924
BshFI GGCC 9 cut(s) 191, 572, 677, 688, 831, 856, 948, 1024, 1201
BsiHKAI GWGCWC 1 cut(s) 1007
BsiHKCI CYCGRG 1 cut(s) 465
BsiSI CCGG 2 cut(s) 535, 832
BslFI GGGAC 2 cut(s) 307, 1061
BslI CCNNNNNNNGG 6 cut(s) 159, 187, 296, 541, 684, 1020
BsmAI GTCTC 3 cut(s) 100, 603, 715
BsmBI CGTCTC 1 cut(s) 715
BsmFI GGGAC 2 cut(s) 307, 1061
BsnI GGCC 9 cut(s) 191, 572, 677, 688, 831, 856, 948, 1024, 1201
Bso31I GGTCTC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 465
Bsp119I TTCGAA 1 cut(s) 641
Bsp1286I GDGCHC 3 cut(s) 41, 731, 1007
Bsp13I TCCGGA 1 cut(s) 534
Bsp143I GATC 3 cut(s) 24, 138, 915
Bsp19I CCATGG 1 cut(s) 1029
BspACI CCGC 1 cut(s) 231
BspANI GGCC 9 cut(s) 191, 572, 677, 688, 831, 856, 948, 1024, 1201
BspCNI CTCAG 2 cut(s) 25, 1032
BspEI TCCGGA 1 cut(s) 534
BspFNI CGCG 1 cut(s) 924
BspLI GGNNCC 1 cut(s) 530
BspMAI CTGCAG 1 cut(s) 1065
BspOI GCTAGC 1 cut(s) 1137
BspT104I TTCGAA 1 cut(s) 641
BspTNI GGTCTC 1 cut(s) 100
BsrI ACTGG 3 cut(s) 301, 949, 1056
BssECI CCNNGG 7 cut(s) 122, 290, 340, 550, 678, 1029, 1196
BssMI GATC 3 cut(s) 24, 138, 915
BssNI GRCGYC 1 cut(s) 620
BssT1I CCWWGG 3 cut(s) 550, 678, 1029
Bst2UI CCWGG 5 cut(s) 196, 291, 341, 476, 899
Bst4CI ACNGT 2 cut(s) 938, 1186
BstACI GRCGYC 1 cut(s) 620
BstAPI GCANNNNNTGC 1 cut(s) 1148
BstBI TTCGAA 1 cut(s) 641
BstC8I GCNNGC 4 cut(s) 570, 1115, 1135, 1149
BstDEI CTNAG 2 cut(s) 33, 1019
BstDSI CCRYGG 1 cut(s) 1029
BstF5I GGATG 6 cut(s) 391, 543, 688, 967, 1039, 1113
BstFNI CGCG 1 cut(s) 924
BstH2I RGCGCY 2 cut(s) 21, 442
BstHHI GCGC 4 cut(s) 20, 441, 912, 1113
BstKTI GATC 3 cut(s) 27, 141, 918
BstMAI GTCTC 3 cut(s) 100, 603, 715
BstMBI GATC 3 cut(s) 24, 138, 915
BstMWI GCNNNNNNNGC 8 cut(s) 84, 554, 974, 986, 1130, 1139, 1148, 1172
BstNI CCWGG 5 cut(s) 196, 291, 341, 476, 899
BstSCI CCNGG 5 cut(s) 194, 289, 339, 474, 897
BstSFI CTRYAG 3 cut(s) 793, 1061, 1155
BstSLI GKGCMC 2 cut(s) 731, 1007
BstUI CGCG 1 cut(s) 924
BstV1I GCAGC 7 cut(s) 99, 268, 448, 483, 544, 755, 989
BstX2I RGATCY 2 cut(s) 138, 915
BstYI RGATCY 2 cut(s) 138, 915
BsuRI GGCC 9 cut(s) 191, 572, 677, 688, 831, 856, 948, 1024, 1201
BtgI CCRYGG 1 cut(s) 1029
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 6 cut(s) 391, 543, 688, 967, 1039, 1113
BtsIMutI CAGTG 1 cut(s) 1049
Cac8I GCNNGC 4 cut(s) 570, 1115, 1135, 1149
CfoI GCGC 4 cut(s) 20, 441, 912, 1113
Cfr13I GGNCC 2 cut(s) 528, 686
CseI GACGC 2 cut(s) 913, 1139
Csp6I GTAC 2 cut(s) 69, 81
CviAII CATG 3 cut(s) 460, 1030, 1097
CviQI GTAC 2 cut(s) 69, 81
DdeI CTNAG 2 cut(s) 33, 1019
DpnI GATC 3 cut(s) 26, 140, 917
DpnII GATC 3 cut(s) 24, 138, 915
DraI TTTAAA 1 cut(s) 250
EaeI YGGCCR 5 cut(s) 189, 675, 829, 854, 1199
Eco130I CCWWGG 3 cut(s) 550, 678, 1029
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 100
Eco32I GATATC 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 528
Eco57I CTGAAG 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 465
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 5 cut(s) 194, 289, 339, 474, 897
EcoRV GATATC 1 cut(s) 790
EcoT14I CCWWGG 3 cut(s) 550, 678, 1029
EcoT38I GRGCYC 1 cut(s) 41
ErhI CCWWGG 3 cut(s) 550, 678, 1029
Esp3I CGTCTC 1 cut(s) 715
FaeI CATG 3 cut(s) 463, 1033, 1100
FaqI GGGAC 2 cut(s) 307, 1061
FatI CATG 3 cut(s) 459, 1029, 1096
FauNDI CATATG 1 cut(s) 733
Fnu4HI GCNGC 8 cut(s) 88, 232, 282, 437, 472, 558, 744, 978
FokI GGATG 6 cut(s) 378, 550, 695, 974, 1046, 1120
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 8 cut(s) 88, 232, 282, 437, 472, 558, 744, 978
FspBI CTAG 4 cut(s) 717, 758, 875, 1134
FspI TGCGCA 1 cut(s) 1112
GlaI GCGC 4 cut(s) 19, 440, 911, 1112
GluI GCNGC 8 cut(s) 88, 232, 282, 437, 472, 558, 744, 978
GsuI CTGGAG 2 cut(s) 34, 1073
HaeII RGCGCY 2 cut(s) 21, 442
HaeIII GGCC 9 cut(s) 191, 572, 677, 688, 831, 856, 948, 1024, 1201
HapII CCGG 2 cut(s) 535, 832
HgaI GACGC 2 cut(s) 913, 1139
HhaI GCGC 4 cut(s) 20, 441, 912, 1113
Hin1I GRCGYC 1 cut(s) 620
Hin1II CATG 3 cut(s) 463, 1033, 1100
Hin6I GCGC 4 cut(s) 18, 439, 910, 1111
HinP1I GCGC 4 cut(s) 18, 439, 910, 1111
HincII GTYRAC 2 cut(s) 150, 844
HindII GTYRAC 2 cut(s) 150, 844
HinfI GANTC 4 cut(s) 638, 850, 1010, 1067
HpaII CCGG 2 cut(s) 535, 832
HphI GGTGA 4 cut(s) 146, 610, 707, 733
Hpy166II GTNNAC 3 cut(s) 150, 844, 1005
Hpy188I TCNGA 3 cut(s) 126, 178, 664
Hpy188III TCNNGA 5 cut(s) 209, 493, 535, 608, 616
Hpy8I GTNNAC 3 cut(s) 150, 844, 1005
HpyAV CCTTC 4 cut(s) 221, 535, 904, 938
HpyCH4III ACNGT 2 cut(s) 938, 1186
HpyCH4IV ACGT 2 cut(s) 620, 708
HpyF10VI GCNNNNNNNGC 8 cut(s) 84, 554, 974, 986, 1130, 1139, 1148, 1172
HpyF3I CTNAG 2 cut(s) 33, 1019
HpySE526I ACGT 2 cut(s) 620, 708
Hsp92I GRCGYC 1 cut(s) 620
Hsp92II CATG 3 cut(s) 463, 1033, 1100
HspAI GCGC 4 cut(s) 18, 439, 910, 1111
Kpn2I TCCGGA 1 cut(s) 534
Kzo9I GATC 3 cut(s) 24, 138, 915
LmnI GCTCC 4 cut(s) 15, 162, 965, 1054
Lsp1109I GCAGC 7 cut(s) 99, 268, 448, 483, 544, 755, 989
LweI GCATC 3 cut(s) 986, 1098, 1160
MaeI CTAG 4 cut(s) 717, 758, 875, 1134
MaeII ACGT 2 cut(s) 620, 708
MalI GATC 3 cut(s) 26, 140, 917
MboI GATC 3 cut(s) 24, 138, 915
MboII GAAGA 2 cut(s) 440, 1172
MflI RGATCY 2 cut(s) 138, 915
MhlI GDGCHC 3 cut(s) 41, 731, 1007
MlsI TGGCCA 2 cut(s) 191, 677
MluCI AATT 7 cut(s) 154, 185, 199, 268, 370, 411, 455
MluNI TGGCCA 2 cut(s) 191, 677
MmeI TCCRAC 1 cut(s) 140
Mox20I TGGCCA 2 cut(s) 191, 677
MroI TCCGGA 1 cut(s) 534
MscI TGGCCA 2 cut(s) 191, 677
MseI TTAA 3 cut(s) 44, 249, 324
MslI CAYNNNNRTG 1 cut(s) 994
Msp20I TGGCCA 2 cut(s) 191, 677
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 2 cut(s) 535, 832
MspR9I CCNGG 5 cut(s) 196, 291, 341, 476, 899
MvaI CCWGG 5 cut(s) 196, 291, 341, 476, 899
MvnI CGCG 1 cut(s) 924
MwoI GCNNNNNNNGC 8 cut(s) 84, 554, 974, 986, 1130, 1139, 1148, 1172
NcoI CCATGG 1 cut(s) 1029
NdeI CATATG 1 cut(s) 733
NdeII GATC 3 cut(s) 24, 138, 915
NheI GCTAGC 1 cut(s) 1133
NlaIII CATG 3 cut(s) 463, 1033, 1100
NlaIV GGNNCC 1 cut(s) 530
NmeAIII GCCGAG 1 cut(s) 1177
NsbI TGCGCA 1 cut(s) 1112
NspV TTCGAA 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 465
PfeI GAWTC 4 cut(s) 638, 850, 1010, 1067
PkrI GCNGC 8 cut(s) 89, 233, 283, 438, 473, 559, 745, 979
Psp6I CCWGG 5 cut(s) 194, 289, 339, 474, 897
PspGI CCWGG 5 cut(s) 194, 289, 339, 474, 897
PspN4I GGNNCC 1 cut(s) 530
PspPI GGNCC 2 cut(s) 528, 686
PspXI VCTCGAGB 1 cut(s) 465
PstI CTGCAG 1 cut(s) 1065
PsuI RGATCY 2 cut(s) 138, 915
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 2 cut(s) 70, 82
RsaNI GTAC 2 cut(s) 69, 81
RseI CAYNNNNRTG 1 cut(s) 994
SaqAI TTAA 3 cut(s) 44, 249, 324
SatI GCNGC 8 cut(s) 88, 232, 282, 437, 472, 558, 744, 978
Sau3AI GATC 3 cut(s) 24, 138, 915
Sau96I GGNCC 2 cut(s) 528, 686
ScaI AGTACT 1 cut(s) 70
ScrFI CCNGG 5 cut(s) 196, 291, 341, 476, 899
SduI GDGCHC 3 cut(s) 41, 731, 1007
SfaNI GCATC 3 cut(s) 986, 1098, 1160
SfcI CTRYAG 3 cut(s) 793, 1061, 1155
Sfr274I CTCGAG 1 cut(s) 465
SfuI TTCGAA 1 cut(s) 641
SinI GGWCC 1 cut(s) 528
SlaI CTCGAG 1 cut(s) 465
SmiMI CAYNNNNRTG 1 cut(s) 994
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 7 cut(s) 154, 185, 199, 268, 370, 411, 455
SsiI CCGC 1 cut(s) 231
SspMI CTAG 4 cut(s) 717, 758, 875, 1134
StyD4I CCNGG 5 cut(s) 194, 289, 339, 474, 897
StyI CCWWGG 3 cut(s) 550, 678, 1029
TaaI ACNGT 2 cut(s) 938, 1186
TaiI ACGT 2 cut(s) 623, 711
TaqI TCGA 3 cut(s) 466, 607, 641
TasI AATT 7 cut(s) 154, 185, 199, 268, 370, 411, 455
TatI WGTACW 2 cut(s) 68, 80
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 4 cut(s) 638, 850, 1010, 1067
Tru1I TTAA 3 cut(s) 44, 249, 324
Tru9I TTAA 3 cut(s) 44, 249, 324
TscAI CASTG 1 cut(s) 1056
TseI GCWGC 7 cut(s) 87, 281, 436, 471, 557, 743, 977
TspDTI ATGAA 5 cut(s) 261, 279, 448, 468, 554
TspGWI ACGGA 2 cut(s) 143, 194
TspRI CASTG 1 cut(s) 1056
VneI GTGCAC 1 cut(s) 1003
VpaK11BI GGWCC 1 cut(s) 528
XapI RAATTY 3 cut(s) 199, 268, 455
XhoI CTCGAG 1 cut(s) 465
XspI CTAG 4 cut(s) 717, 758, 875, 1134
ZraI GACGTC 1 cut(s) 621
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.