Rh5AG425400
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
73384292 .. 73387779
3488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG425400.1

Sequence Viewer

Length: 1308 bp
ATGATACCCAACTTTTGTTGCGTTTTGCTAGAAAGGCAGAGATTTCAGAAAAAAGGGTTGTTGGTTTCTACTTTTCTTGTGTTCATGGGGGTCTGCTGGAGCGCCCAGATCAAAGCTGAGAGCCCGTTAAACACAGGTTCAAAGTTTGTTAGTACTGATGGCAGTACAAGCAGCAAGGTCTCATCATTTTCAGCACCTCCAACTCCTCGGACGGAGGGTGAGATCTTGCAGTCAACCAATTTGAGGAGCTTCAGTTTCTCTGACCTCAAATTGGCCACCAGGAATTTCCGTCCTGATAGTGTGTTAGGAGAAGGCGGCTTTGGTTCTGTTTTTAAAGGGTGGATTGATGAAAATTCATTTACAGCTGCAAAGCCTGGGACTGGCATAGTTTTGGCTGTGAAACGGCTTAACCAAGAAAGTTTCCAGGGTCATAGGGAGTGGTTGGCAGAAGTGAATTATTTGGGGCAGTTCCATCATCCTAATCTTGTGAAACTAATTGGCTATTGCTTGGAAGATGAGCAGCGCCTTTTGGTATATGAATTCATGCCTCGAGGCAGCCTGGAAAATCATTTGTTCAGGAGAGGTTCTTATTTTCAACCTCTTTCTTGGACCCTCCGGATGAAGGTTGCCCTTGGTGCTGCAAAGGGGCTGGCCTTTTTGCATAGTGCTGAAACAAGGGTGATATATCGAGACTTCAAGACGTCTAATATCCTGCTTGATTCGAACTACAATGCAAAGCTGTCAGATTTTGGCTTGGCCAAGGATGGGCCAACAGGTGATAAAAGCCACGTCTCTACTAGGGTGATGGGCACATATGGATATGCAGCCCCAGAATATCTAGCCACAGGTCATCTTACTGCCAAGAGTGATATCTATAGTTTTGGAGTTGTCTTATTGGAGATGTTATCTGGCCGGAGAGCAGTTGACAAGAATCGGCCATCTGGGGAACACAATCTAGTTGAGTGGGCTAAACCCTTCCTGGCAAACAAGCGCAAGATCTTTCGCGTCATAGACAACCGTTTAGAAGGCCAGTATTCAATGGATGGAGCTTATAAGGCAGCTACCCTCGCATTACGATGCCTGTCCACAGAATCCAAGCTCAGGCCAAGCATGGATGAGGTCGTCAAAGCACTGGAGCAACTGCAGGATTCTAATGTCCCCACCAGCAATCAAATCCATGCACACAGGATGCGCAGGCGAAGTGCAGATGACGCTAGCAAAGCAAGGCGTGCATCTATAGAAGAAGCTAACAAAGCAAGGAATACTGTTGCTTATCCTCGGCCATCTGCTTCGCCCCTATATGCTTGA

Protein Analysis

435

Amino Acids

48.54

Weight (kDa)

9.58

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 99 - 376 1.5e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 100 - 378 3.8e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1053
AatII GACGTC 1 cut(s) 704
AbsI CCTCGAGG 1 cut(s) 549
Acc16I TGCGCA 1 cut(s) 1193
AccII CGCG 1 cut(s) 1005
AccIII TCCGGA 1 cut(s) 615
AciI CCGC 1 cut(s) 315
AcoI YGGCCR 5 cut(s) 273, 756, 910, 935, 1280
AcsI RAATTY 3 cut(s) 283, 352, 539
AcuI CTGAAG 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 701
AfaI GTAC 2 cut(s) 154, 166
AfiI CCNNNNNNNGG 6 cut(s) 243, 271, 380, 622, 765, 1101
AgsI TTSAA 4 cut(s) 141, 596, 697, 1038
AjiI CACGTC 1 cut(s) 790
AjnI CCWGG 5 cut(s) 278, 373, 423, 558, 978
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 8 cut(s) 116, 249, 365, 739, 1049, 1061, 1099, 1247
AluI AGCT 8 cut(s) 116, 249, 365, 739, 1049, 1061, 1099, 1247
Alw26I GTCTC 3 cut(s) 184, 684, 796
Ama87I CYCGRG 1 cut(s) 549
Aor13HI TCCGGA 1 cut(s) 615
AoxI GGCC 9 cut(s) 273, 651, 756, 767, 910, 935, 1027, 1103, 1280
ApeKI GCWGC 7 cut(s) 171, 365, 520, 555, 638, 824, 1058
ApoI RAATTY 3 cut(s) 283, 352, 539
AspLEI GCGC 4 cut(s) 104, 525, 993, 1194
AspS9I GGNCC 2 cut(s) 609, 767
AsuHPI GGTGA 4 cut(s) 230, 691, 788, 814
AsuII TTCGAA 1 cut(s) 722
AsuNHI GCTAGC 1 cut(s) 1214
AvaI CYCGRG 1 cut(s) 549
AvaII GGWCC 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 812
BalI TGGCCA 2 cut(s) 275, 758
BanII GRGCYC 1 cut(s) 125
BbvI GCAGC 7 cut(s) 183, 352, 532, 567, 625, 836, 1070
BccI CCATC 7 cut(s) 152, 480, 758, 799, 946, 1037, 1291
BceAI ACGGC 1 cut(s) 419
BciT130I CCWGG 5 cut(s) 280, 375, 425, 560, 980
BcoDI GTCTC 3 cut(s) 184, 684, 796
BfaI CTAG 5 cut(s) 29, 798, 839, 956, 1215
BfmI CTRYAG 3 cut(s) 874, 1142, 1236
BfoI RGCGCY 2 cut(s) 105, 526
BglII AGATCT 2 cut(s) 222, 996
BisI GCNGC 8 cut(s) 172, 316, 366, 521, 556, 639, 825, 1059
BlsI GCNGC 8 cut(s) 173, 317, 367, 522, 557, 640, 826, 1060
BmcAI AGTACT 1 cut(s) 154
Bme1390I CCNGG 5 cut(s) 280, 375, 425, 560, 980
Bme18I GGWCC 1 cut(s) 609
BmeT110I CYCGRG 1 cut(s) 549
BmgBI CACGTC 1 cut(s) 790
BmgT120I GGNCC 2 cut(s) 609, 767
BmiI GGNNCC 1 cut(s) 611
BmrFI CCNGG 5 cut(s) 280, 375, 425, 560, 980
BmsI GCATC 3 cut(s) 1067, 1179, 1241
BmtI GCTAGC 1 cut(s) 1218
BpmI CTGGAG 2 cut(s) 118, 1154
Bpu10I CCTNAGC 1 cut(s) 1100
Bpu14I TTCGAA 1 cut(s) 722
BsaHI GRCGYC 1 cut(s) 701
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 6 cut(s) 206, 374, 424, 631, 759, 1277
BsaWI WCCGGW 1 cut(s) 615
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 6 cut(s) 243, 271, 380, 622, 765, 1101
Bse1I ACTGG 3 cut(s) 385, 1030, 1137
BseAI TCCGGA 1 cut(s) 615
BseBI CCWGG 5 cut(s) 280, 375, 425, 560, 980
BseDI CCNNGG 6 cut(s) 206, 374, 424, 631, 759, 1277
BseGI GGATG 6 cut(s) 475, 624, 769, 1048, 1120, 1194
BseLI CCNNNNNNNGG 6 cut(s) 243, 271, 380, 622, 765, 1101
BseMII CTCAG 2 cut(s) 108, 1114
BseNI ACTGG 3 cut(s) 385, 1030, 1137
BseRI GAGGAG 2 cut(s) 195, 259
BseSI GKGCMC 1 cut(s) 812
BseXI GCAGC 7 cut(s) 183, 352, 532, 567, 625, 836, 1070
BsgI GTGCAG 1 cut(s) 1224
Bsh1236I CGCG 1 cut(s) 1005
BshFI GGCC 9 cut(s) 275, 653, 758, 769, 912, 937, 1029, 1105, 1282
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 2 cut(s) 616, 913
BslFI GGGAC 2 cut(s) 391, 1142
BslI CCNNNNNNNGG 6 cut(s) 243, 271, 380, 622, 765, 1101
BsmAI GTCTC 3 cut(s) 184, 684, 796
BsmBI CGTCTC 1 cut(s) 796
BsmFI GGGAC 2 cut(s) 391, 1142
BsnI GGCC 9 cut(s) 275, 653, 758, 769, 912, 937, 1029, 1105, 1282
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 549
Bsp119I TTCGAA 1 cut(s) 722
Bsp1286I GDGCHC 2 cut(s) 125, 812
Bsp13I TCCGGA 1 cut(s) 615
Bsp143I GATC 3 cut(s) 108, 222, 996
BspACI CCGC 1 cut(s) 315
BspANI GGCC 9 cut(s) 275, 653, 758, 769, 912, 937, 1029, 1105, 1282
BspCNI CTCAG 2 cut(s) 109, 1113
BspEI TCCGGA 1 cut(s) 615
BspFNI CGCG 1 cut(s) 1005
BspLI GGNNCC 1 cut(s) 611
BspMAI CTGCAG 1 cut(s) 1146
BspOI GCTAGC 1 cut(s) 1218
BspT104I TTCGAA 1 cut(s) 722
BspTNI GGTCTC 1 cut(s) 184
BsrI ACTGG 3 cut(s) 385, 1030, 1137
BssECI CCNNGG 6 cut(s) 206, 374, 424, 631, 759, 1277
BssMI GATC 3 cut(s) 108, 222, 996
BssNI GRCGYC 1 cut(s) 701
BssT1I CCWWGG 2 cut(s) 631, 759
Bst2UI CCWGG 5 cut(s) 280, 375, 425, 560, 980
Bst4CI ACNGT 2 cut(s) 1019, 1267
BstACI GRCGYC 1 cut(s) 701
BstAPI GCANNNNNTGC 1 cut(s) 1229
BstBI TTCGAA 1 cut(s) 722
BstC8I GCNNGC 4 cut(s) 651, 1196, 1216, 1230
BstDEI CTNAG 2 cut(s) 117, 1100
BstF5I GGATG 6 cut(s) 475, 624, 769, 1048, 1120, 1194
BstFNI CGCG 1 cut(s) 1005
BstH2I RGCGCY 2 cut(s) 105, 526
BstHHI GCGC 4 cut(s) 104, 525, 993, 1194
BstKTI GATC 3 cut(s) 111, 225, 999
BstMAI GTCTC 3 cut(s) 184, 684, 796
BstMBI GATC 3 cut(s) 108, 222, 996
BstMWI GCNNNNNNNGC 9 cut(s) 34, 168, 635, 1055, 1067, 1211, 1220, 1229, 1253
BstNI CCWGG 5 cut(s) 280, 375, 425, 560, 980
BstSCI CCNGG 5 cut(s) 278, 373, 423, 558, 978
BstSFI CTRYAG 3 cut(s) 874, 1142, 1236
BstSLI GKGCMC 1 cut(s) 812
BstUI CGCG 1 cut(s) 1005
BstV1I GCAGC 7 cut(s) 183, 352, 532, 567, 625, 836, 1070
BstX2I RGATCY 2 cut(s) 222, 996
BstYI RGATCY 2 cut(s) 222, 996
BsuRI GGCC 9 cut(s) 275, 653, 758, 769, 912, 937, 1029, 1105, 1282
BtrI CACGTC 1 cut(s) 790
BtsCI GGATG 6 cut(s) 475, 624, 769, 1048, 1120, 1194
BtsIMutI CAGTG 1 cut(s) 1130
Cac8I GCNNGC 4 cut(s) 651, 1196, 1216, 1230
CfoI GCGC 4 cut(s) 104, 525, 993, 1194
Cfr13I GGNCC 2 cut(s) 609, 767
CseI GACGC 2 cut(s) 994, 1220
Csp6I GTAC 2 cut(s) 153, 165
CviAII CATG 4 cut(s) 85, 544, 1111, 1178
CviQI GTAC 2 cut(s) 153, 165
DdeI CTNAG 2 cut(s) 117, 1100
DpnI GATC 3 cut(s) 110, 224, 998
DpnII GATC 3 cut(s) 108, 222, 996
DraI TTTAAA 1 cut(s) 334
EaeI YGGCCR 5 cut(s) 273, 756, 910, 935, 1280
Eco130I CCWWGG 2 cut(s) 631, 759
Eco24I GRGCYC 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 184
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 549
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 5 cut(s) 278, 373, 423, 558, 978
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 2 cut(s) 631, 759
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 2 cut(s) 631, 759
Esp3I CGTCTC 1 cut(s) 796
FaeI CATG 4 cut(s) 88, 547, 1114, 1181
FaqI GGGAC 2 cut(s) 391, 1142
FatI CATG 4 cut(s) 84, 543, 1110, 1177
FauNDI CATATG 1 cut(s) 814
Fnu4HI GCNGC 8 cut(s) 172, 316, 366, 521, 556, 639, 825, 1059
FokI GGATG 6 cut(s) 462, 631, 776, 1055, 1127, 1201
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 8 cut(s) 172, 316, 366, 521, 556, 639, 825, 1059
FspBI CTAG 5 cut(s) 29, 798, 839, 956, 1215
FspI TGCGCA 1 cut(s) 1193
GlaI GCGC 4 cut(s) 103, 524, 992, 1193
GluI GCNGC 8 cut(s) 172, 316, 366, 521, 556, 639, 825, 1059
GsuI CTGGAG 2 cut(s) 118, 1154
HaeII RGCGCY 2 cut(s) 105, 526
HaeIII GGCC 9 cut(s) 275, 653, 758, 769, 912, 937, 1029, 1105, 1282
HapII CCGG 2 cut(s) 616, 913
HgaI GACGC 2 cut(s) 994, 1220
HhaI GCGC 4 cut(s) 104, 525, 993, 1194
Hin1I GRCGYC 1 cut(s) 701
Hin1II CATG 4 cut(s) 88, 547, 1114, 1181
Hin6I GCGC 4 cut(s) 102, 523, 991, 1192
HinP1I GCGC 4 cut(s) 102, 523, 991, 1192
HincII GTYRAC 2 cut(s) 234, 925
HindII GTYRAC 2 cut(s) 234, 925
HinfI GANTC 4 cut(s) 719, 931, 1091, 1148
HpaII CCGG 2 cut(s) 616, 913
HphI GGTGA 4 cut(s) 230, 691, 788, 814
Hpy166II GTNNAC 3 cut(s) 234, 925, 1086
Hpy188I TCNGA 4 cut(s) 48, 210, 262, 745
Hpy188III TCNNGA 5 cut(s) 293, 577, 616, 689, 697
Hpy8I GTNNAC 3 cut(s) 234, 925, 1086
HpyAV CCTTC 4 cut(s) 305, 616, 985, 1019
HpyCH4III ACNGT 2 cut(s) 1019, 1267
HpyCH4IV ACGT 2 cut(s) 701, 789
HpyF10VI GCNNNNNNNGC 9 cut(s) 34, 168, 635, 1055, 1067, 1211, 1220, 1229, 1253
HpyF3I CTNAG 2 cut(s) 117, 1100
HpySE526I ACGT 2 cut(s) 701, 789
Hsp92I GRCGYC 1 cut(s) 701
Hsp92II CATG 4 cut(s) 88, 547, 1114, 1181
HspAI GCGC 4 cut(s) 102, 523, 991, 1192
Kpn2I TCCGGA 1 cut(s) 615
Kzo9I GATC 3 cut(s) 108, 222, 996
LmnI GCTCC 4 cut(s) 99, 246, 1046, 1135
Lsp1109I GCAGC 7 cut(s) 183, 352, 532, 567, 625, 836, 1070
LweI GCATC 3 cut(s) 1067, 1179, 1241
MaeI CTAG 5 cut(s) 29, 798, 839, 956, 1215
MaeII ACGT 2 cut(s) 701, 789
MalI GATC 3 cut(s) 110, 224, 998
MboI GATC 3 cut(s) 108, 222, 996
MboII GAAGA 2 cut(s) 524, 1253
MflI RGATCY 2 cut(s) 222, 996
MhlI GDGCHC 2 cut(s) 125, 812
MlsI TGGCCA 2 cut(s) 275, 758
MluCI AATT 7 cut(s) 238, 269, 283, 352, 454, 495, 539
MluNI TGGCCA 2 cut(s) 275, 758
MmeI TCCRAC 1 cut(s) 224
Mox20I TGGCCA 2 cut(s) 275, 758
MroI TCCGGA 1 cut(s) 615
MscI TGGCCA 2 cut(s) 275, 758
MseI TTAA 3 cut(s) 128, 333, 408
MslI CAYNNNNRTG 1 cut(s) 1075
Msp20I TGGCCA 2 cut(s) 275, 758
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 2 cut(s) 616, 913
MspR9I CCNGG 5 cut(s) 280, 375, 425, 560, 980
MvaI CCWGG 5 cut(s) 280, 375, 425, 560, 980
MvnI CGCG 1 cut(s) 1005
MwoI GCNNNNNNNGC 9 cut(s) 34, 168, 635, 1055, 1067, 1211, 1220, 1229, 1253
NdeI CATATG 1 cut(s) 814
NdeII GATC 3 cut(s) 108, 222, 996
NheI GCTAGC 1 cut(s) 1214
NlaIII CATG 4 cut(s) 88, 547, 1114, 1181
NlaIV GGNNCC 1 cut(s) 611
NmeAIII GCCGAG 1 cut(s) 1258
NsbI TGCGCA 1 cut(s) 1193
NspV TTCGAA 1 cut(s) 722
PaeR7I CTCGAG 1 cut(s) 549
PfeI GAWTC 4 cut(s) 719, 931, 1091, 1148
PkrI GCNGC 8 cut(s) 173, 317, 367, 522, 557, 640, 826, 1060
PsiI TTATAA 1 cut(s) 1053
Psp6I CCWGG 5 cut(s) 278, 373, 423, 558, 978
PspGI CCWGG 5 cut(s) 278, 373, 423, 558, 978
PspN4I GGNNCC 1 cut(s) 611
PspPI GGNCC 2 cut(s) 609, 767
PspXI VCTCGAGB 1 cut(s) 549
PstI CTGCAG 1 cut(s) 1146
PsuI RGATCY 2 cut(s) 222, 996
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 2 cut(s) 154, 166
RsaNI GTAC 2 cut(s) 153, 165
RseI CAYNNNNRTG 1 cut(s) 1075
SaqAI TTAA 3 cut(s) 128, 333, 408
SatI GCNGC 8 cut(s) 172, 316, 366, 521, 556, 639, 825, 1059
Sau3AI GATC 3 cut(s) 108, 222, 996
Sau96I GGNCC 2 cut(s) 609, 767
ScaI AGTACT 1 cut(s) 154
ScrFI CCNGG 5 cut(s) 280, 375, 425, 560, 980
SduI GDGCHC 2 cut(s) 125, 812
SfaNI GCATC 3 cut(s) 1067, 1179, 1241
SfcI CTRYAG 3 cut(s) 874, 1142, 1236
Sfr274I CTCGAG 1 cut(s) 549
SfuI TTCGAA 1 cut(s) 722
SinI GGWCC 1 cut(s) 609
SlaI CTCGAG 1 cut(s) 549
SmiMI CAYNNNNRTG 1 cut(s) 1075
SmlI CTYRAG 1 cut(s) 549
SmoI CTYRAG 1 cut(s) 549
Sse9I AATT 7 cut(s) 238, 269, 283, 352, 454, 495, 539
SsiI CCGC 1 cut(s) 315
SspMI CTAG 5 cut(s) 29, 798, 839, 956, 1215
StyD4I CCNGG 5 cut(s) 278, 373, 423, 558, 978
StyI CCWWGG 2 cut(s) 631, 759
TaaI ACNGT 2 cut(s) 1019, 1267
TaiI ACGT 2 cut(s) 704, 792
TaqI TCGA 3 cut(s) 550, 688, 722
TasI AATT 7 cut(s) 238, 269, 283, 352, 454, 495, 539
TatI WGTACW 2 cut(s) 152, 164
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 4 cut(s) 719, 931, 1091, 1148
Tru1I TTAA 3 cut(s) 128, 333, 408
Tru9I TTAA 3 cut(s) 128, 333, 408
TscAI CASTG 1 cut(s) 1137
TseI GCWGC 7 cut(s) 171, 365, 520, 555, 638, 824, 1058
TspDTI ATGAA 6 cut(s) 73, 345, 363, 532, 552, 635
TspGWI ACGGA 2 cut(s) 227, 278
TspRI CASTG 1 cut(s) 1137
VpaK11BI GGWCC 1 cut(s) 609
XapI RAATTY 3 cut(s) 283, 352, 539
XhoI CTCGAG 1 cut(s) 549
XspI CTAG 5 cut(s) 29, 798, 839, 956, 1215
ZraI GACGTC 1 cut(s) 702
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.