Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004890

Physical Location & Seq

Genomic Coordinates Reverse (-)

5900810 .. 5903380

Gene Structure 2571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07390.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGGGGTCTGCCTGAGCGCCCGAATCAAAGCTGAGAGCCCTGCAAATACAGGTTCAAAATTCGAAAGCAATGACGGGAACCTCAGCACAAGCAGTAAGGTCTCATCATATACGGCACCTCCAACTCCTCGGAGTGAGGGTGAGATCTTGCAGGCTTCCAATCTAAAGAGCTTTAGTTTTAACAACCTCAAAATGGCCACAAGGAATTTCCGTCCTGATAGTGTGTTGGGAGAAGGTGGATTTGGTTCTGTTTTTAAGGGGTGGATTGATGAAAATTCGTTTACTGCTGCAAAGCCTGGGACTGGCATAGTTTTGGCTGTGAAACGGCTTAACCAAGAAAGTTATCAGGGTCACCGAGAGTGGTTGGCAGAAGTGAATTATCTAGGACAGCTCTACCACCCGAATCTCGTGAAACTAATTGGCTTTTGCTTGGAGGATGAACACCGACTTCTGGTGTATGAATTCATGCCTCGGGGCAGCTTGGAAAATCATTTGTTCAGGAGAGGCTCTTATTTCCATCCGCTTTCTTGGAACCTCCGCATCAAGGTTGCCCTTGGTGCTGCAAAGGGTCTTGCTTTTCTTCACAGTGCTGAAACAAAAGTGATATACCGAGACTTCAAGACTTCGAACATCCTGCTCGATTCGAACTACAACGCAAAACTTTCCGACTTTGGTTTGGCCAAAGATGGGCCAACGGGTGATAAAAGCCATGTCTCTACGAGGATCATGGGTACCTATGGATATGCAGCACCGGAATATCTAGCCACAGGTCATCTAACTGCCAAGAGCGACATCTATAGTTTTGGAGTCGTTTTGTTGGAGATGTTATCTGGCCGGAGAGCAGTTGACAAGAACCGGCCATCCGGAGAACACAATCTGGTGGAGTGGGCTAAACCCTTCCTGGTAAACAAGCGTAAGATCTTTCGCATCATAGACAACCGTCTAGAAGGTCAGTATTCAATGGATGGAGCTCACAAGGCAGGTATCCTTGCAGCAAGATGCCTGTCCACAGAATCCAAGCTCAGGCCAAACATGGATGAGGTTGTAAAAACACTTGAACAACTGCCAGATTATAATCCCACCGGAGGCACTCAGAGTAATGTTCAAAGGATGCGCAGACGAAGTGCAGACGATGCTAGCAAAGCCAAGCGTGCAGCAGCAGCAGCTGATGCGATAAAGGCAGCTAACGAGGCAAGGAAAACTGTCGCCTATCCTCGGCCCTCTGCTTCCCCGCTTTACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

415

Amino Acids

45.68

Weight (kDa)

9.55

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07570 AT1G07570 AT1G07570 AT1G07570 AT2G28930 AT2G28930 AT2G28930
fragaria_vesca	FvH4_3g36200 FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
malus_domestica	MD00G1012300.v1.1 MD03G1092200.v1.1
prunus_persica	Prupe.6G076200_v2.0.a1
pyrus_communis	pycom03g07390 pycom11g08870
rosa_chinensis	RchiOBHm_Chr5g0064971
rosa_laevigata	RLG00000013060 RLG00000022531 RLG00000023667 RLG00000035745
rosa_multiflora	Rmu_sc0003352.1_g000018
rosa_roxburghii	Rroxscaffold_1G00016340
rosa_rugosa	Rorug05G0366800 Rorug05G0366900 Rorug05G0367000
rosa_samantha	Rh5AG425400 Rh5BG440300 Rh5CG462900
rosa_wichuraiana	Rw5G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1074
Acc16I	TGCGCA	1 cut(s)	1115
Acc36I	ACCTGC	1 cut(s)	971
Acc65I	GGTACC	1 cut(s)	731
AccB1I	GGYRCC	2 cut(s)	115, 731
AccIII	TCCGGA	1 cut(s)	863
AciI	CCGC	3 cut(s)	521, 538, 1232
AclWI	GGATC	1 cut(s)	731
AcoI	YGGCCR	4 cut(s)	195, 678, 832, 857
AcsI	RAATTY	4 cut(s)	59, 205, 274, 461
AfaI	GTAC	1 cut(s)	733
AfiI	CCNNNNNNNGG	8 cut(s)	193, 302, 451, 544, 687, 1023, 1085, 1215
AgsI	TTSAA	5 cut(s)	57, 619, 960, 1058, 1106
AjnI	CCWGG	2 cut(s)	295, 900
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AloI	GAACNNNNNNTCC	2 cut(s)	845, 877
AluBI	AGCT	8 cut(s)	32, 171, 391, 480, 971, 1021, 1166, 1184
AluI	AGCT	8 cut(s)	32, 171, 391, 480, 971, 1021, 1166, 1184
Alw21I	GWGCWC	1 cut(s)	973
Alw26I	GTCTC	3 cut(s)	106, 606, 718
AlwI	GGATC	1 cut(s)	731
AlwNI	CAGNNNCTG	1 cut(s)	1166
Ama87I	CYCGRG	1 cut(s)	471
Aor13HI	TCCGGA	1 cut(s)	863
AoxI	GGCC	7 cut(s)	195, 678, 689, 832, 857, 1025, 1217
ApoI	RAATTY	4 cut(s)	59, 205, 274, 461
Asp718I	GGTACC	1 cut(s)	731
AspLEI	GCGC	2 cut(s)	20, 1116
AspS9I	GGNCC	2 cut(s)	689, 1218
AsuHPI	GGTGA	3 cut(s)	152, 344, 710
AsuII	TTCGAA	3 cut(s)	63, 626, 644
AsuNHI	GCTAGC	1 cut(s)	1136
AvaI	CYCGRG	1 cut(s)	471
BalI	TGGCCA	2 cut(s)	197, 680
BanI	GGYRCC	2 cut(s)	115, 731
BanII	GRGCYC	2 cut(s)	41, 973
BauI	CACGAG	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	973
BbvCI	CCTCAGC	1 cut(s)	83
BccI	CCATC	4 cut(s)	525, 680, 868, 959
BceAI	ACGGC	2 cut(s)	129, 341
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BciT130I	CCWGG	2 cut(s)	297, 902
BciVI	GTATCC	1 cut(s)	995
BcoDI	GTCTC	3 cut(s)	106, 606, 718
BfaI	CTAG	4 cut(s)	383, 761, 944, 1137
BfmI	CTRYAG	1 cut(s)	796
BfoI	RGCGCY	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	971
BfuI	GTATCC	1 cut(s)	995
BglII	AGATCT	2 cut(s)	144, 918
Bme1390I	CCNGG	2 cut(s)	297, 902
BmeT110I	CYCGRG	1 cut(s)	471
BmgT120I	GGNCC	2 cut(s)	689, 1218
BmiI	GGNNCC	4 cut(s)	80, 117, 533, 733
BmrFI	CCNGG	2 cut(s)	297, 902
BmsI	GCATC	6 cut(s)	549, 936, 989, 1101, 1123, 1159
BmtI	GCTAGC	1 cut(s)	1140
BoxI	GACNNNNGTC	1 cut(s)	939
Bpu10I	CCTNAGC	3 cut(s)	14, 83, 1022
Bpu14I	TTCGAA	3 cut(s)	63, 626, 644
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	5 cut(s)	128, 296, 470, 553, 1214
BsaWI	WCCGGW	3 cut(s)	751, 863, 1082
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 124, 133, 154
Bsc4I	CCNNNNNNNGG	8 cut(s)	193, 302, 451, 544, 687, 1023, 1085, 1215
Bse118I	RCCGGY	1 cut(s)	855
Bse1I	ACTGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	76
Bse8I	GATNNNNATC	1 cut(s)	1074
BseAI	TCCGGA	1 cut(s)	863
BseBI	CCWGG	2 cut(s)	297, 902
BseDI	CCNNGG	5 cut(s)	128, 296, 470, 553, 1214
BseGI	GGATG	7 cut(s)	442, 517, 630, 860, 970, 1042, 1116
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	8 cut(s)	193, 302, 451, 544, 687, 1023, 1085, 1215
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	5 cut(s)	5, 24, 97, 1036, 1106
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	1 cut(s)	117
BsgI	GTGCAG	2 cut(s)	1146, 1173
BshFI	GGCC	7 cut(s)	197, 680, 691, 834, 859, 1027, 1219
BshNI	GGYRCC	2 cut(s)	115, 731
BsiHKAI	GWGCWC	1 cut(s)	973
BsiHKCI	CYCGRG	1 cut(s)	471
BsiSI	CCGG	5 cut(s)	752, 835, 856, 864, 1083
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	8 cut(s)	193, 302, 451, 544, 687, 1023, 1085, 1215
BsmAI	GTCTC	3 cut(s)	106, 606, 718
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	7 cut(s)	197, 680, 691, 834, 859, 1027, 1219
Bso31I	GGTCTC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	471
Bsp119I	TTCGAA	3 cut(s)	63, 626, 644
Bsp1286I	GDGCHC	2 cut(s)	41, 973
Bsp13I	TCCGGA	1 cut(s)	863
Bsp143I	GATC	3 cut(s)	144, 723, 918
BspACI	CCGC	3 cut(s)	521, 538, 1232
BspANI	GGCC	7 cut(s)	197, 680, 691, 834, 859, 1027, 1219
BspCNI	CTCAG	5 cut(s)	6, 25, 96, 1035, 1105
BspEI	TCCGGA	1 cut(s)	863
BspLI	GGNNCC	4 cut(s)	80, 117, 533, 733
BspMI	ACCTGC	1 cut(s)	971
BspOI	GCTAGC	1 cut(s)	1140
BspPI	GGATC	1 cut(s)	731
BspT104I	TTCGAA	3 cut(s)	63, 626, 644
BspT107I	GGYRCC	2 cut(s)	115, 731
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	855
BsrI	ACTGG	1 cut(s)	307
BssAI	RCCGGY	1 cut(s)	855
BssECI	CCNNGG	5 cut(s)	128, 296, 470, 553, 1214
BssMI	GATC	3 cut(s)	144, 723, 918
BssSI	CACGAG	1 cut(s)	407
BssT1I	CCWWGG	1 cut(s)	553
Bst2BI	CACGAG	1 cut(s)	407
Bst2UI	CCWGG	2 cut(s)	297, 902
Bst4CI	ACNGT	3 cut(s)	587, 941, 1204
BstAPI	GCANNNNNTGC	2 cut(s)	1133, 1169
BstBI	TTCGAA	3 cut(s)	63, 626, 644
BstC8I	GCNNGC	3 cut(s)	153, 1138, 1152
BstDEI	CTNAG	5 cut(s)	14, 33, 83, 1022, 1092
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	7 cut(s)	442, 517, 630, 860, 970, 1042, 1116
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	20, 1116
BstKTI	GATC	3 cut(s)	147, 726, 921
BstMAI	GTCTC	3 cut(s)	106, 606, 718
BstMBI	GATC	3 cut(s)	144, 723, 918
BstNI	CCWGG	2 cut(s)	297, 902
BstPAI	GACNNNNGTC	1 cut(s)	939
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	295, 900
BstSFI	CTRYAG	1 cut(s)	796
BstX2I	RGATCY	2 cut(s)	144, 918
BstYI	RGATCY	2 cut(s)	144, 918
BsuI	GTATCC	1 cut(s)	995
BsuRI	GGCC	7 cut(s)	197, 680, 691, 834, 859, 1027, 1219
BtsCI	GGATG	7 cut(s)	442, 517, 630, 860, 970, 1042, 1116
BtsIMutI	CAGTG	1 cut(s)	592
BveI	ACCTGC	1 cut(s)	971
Cac8I	GCNNGC	3 cut(s)	153, 1138, 1152
CaiI	CAGNNNCTG	1 cut(s)	1166
CfoI	GCGC	2 cut(s)	20, 1116
Cfr10I	RCCGGY	1 cut(s)	855
Cfr13I	GGNCC	2 cut(s)	689, 1218
Csp6I	GTAC	1 cut(s)	732
CviAII	CATG	4 cut(s)	466, 710, 727, 1033
CviQI	GTAC	1 cut(s)	732
DdeI	CTNAG	5 cut(s)	14, 33, 83, 1022, 1092
DpnI	GATC	3 cut(s)	146, 725, 920
DpnII	GATC	3 cut(s)	144, 723, 918
EaeI	YGGCCR	4 cut(s)	195, 678, 832, 857
Ecl136II	GAGCTC	1 cut(s)	971
Eco130I	CCWWGG	1 cut(s)	553
Eco24I	GRGCYC	2 cut(s)	41, 973
Eco31I	GGTCTC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	971
Eco88I	CYCGRG	1 cut(s)	471
Eco91I	GGTNACC	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	971
EcoO65I	GGTNACC	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	295, 900
EcoT14I	CCWWGG	1 cut(s)	553
EcoT38I	GRGCYC	2 cut(s)	41, 973
ErhI	CCWWGG	1 cut(s)	553
FaeI	CATG	4 cut(s)	469, 713, 730, 1036
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	4 cut(s)	465, 709, 726, 1032
FauI	CCCGC	1 cut(s)	1239
FokI	GGATG	7 cut(s)	449, 504, 617, 847, 977, 1049, 1123
FriOI	GRGCYC	2 cut(s)	41, 973
FspBI	CTAG	4 cut(s)	383, 761, 944, 1137
FspI	TGCGCA	1 cut(s)	1115
GlaI	GCGC	2 cut(s)	19, 1115
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	7 cut(s)	197, 680, 691, 834, 859, 1027, 1219
HapII	CCGG	5 cut(s)	752, 835, 856, 864, 1083
HhaI	GCGC	2 cut(s)	20, 1116
Hin1II	CATG	4 cut(s)	469, 713, 730, 1036
Hin6I	GCGC	2 cut(s)	18, 1114
HinP1I	GCGC	2 cut(s)	18, 1114
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HinfI	GANTC	5 cut(s)	24, 403, 641, 807, 1013
HpaII	CCGG	5 cut(s)	752, 835, 856, 864, 1083
HphI	GGTGA	3 cut(s)	152, 344, 710
Hpy166II	GTNNAC	4 cut(s)	282, 847, 907, 1008
Hpy188I	TCNGA	3 cut(s)	132, 667, 1095
Hpy188III	TCNNGA	6 cut(s)	215, 409, 499, 619, 864, 944
Hpy8I	GTNNAC	4 cut(s)	282, 847, 907, 1008
HpyAV	CCTTC	3 cut(s)	227, 907, 941
HpyCH4III	ACNGT	3 cut(s)	587, 941, 1204
HpyCH4V	TGCA	8 cut(s)	44, 151, 290, 563, 746, 992, 1127, 1154
HpyF3I	CTNAG	5 cut(s)	14, 33, 83, 1022, 1092
Hsp92II	CATG	4 cut(s)	469, 713, 730, 1036
HspAI	GCGC	2 cut(s)	18, 1114
Kpn2I	TCCGGA	1 cut(s)	863
KpnI	GGTACC	1 cut(s)	735
Kzo9I	GATC	3 cut(s)	144, 723, 918
LmnI	GCTCC	1 cut(s)	968
LweI	GCATC	6 cut(s)	549, 936, 989, 1101, 1123, 1159
MaeI	CTAG	4 cut(s)	383, 761, 944, 1137
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	3 cut(s)	146, 725, 920
MboI	GATC	3 cut(s)	144, 723, 918
MboII	GAAGA	1 cut(s)	572
MflI	RGATCY	2 cut(s)	144, 918
MhlI	GDGCHC	2 cut(s)	41, 973
MlsI	TGGCCA	2 cut(s)	197, 680
MluCI	AATT	6 cut(s)	59, 205, 274, 376, 417, 461
MluNI	TGGCCA	2 cut(s)	197, 680
MlyI	GAGTC	1 cut(s)	816
MmeI	TCCRAC	3 cut(s)	146, 690, 798
Mox20I	TGGCCA	2 cut(s)	197, 680
MroI	TCCGGA	1 cut(s)	863
MscI	TGGCCA	2 cut(s)	197, 680
MseI	TTAA	3 cut(s)	180, 255, 330
Msp20I	TGGCCA	2 cut(s)	197, 680
MspA1I	CMGCKG	1 cut(s)	1166
MspI	CCGG	5 cut(s)	752, 835, 856, 864, 1083
MspR9I	CCNGG	2 cut(s)	297, 902
MvaI	CCWGG	2 cut(s)	297, 902
NdeII	GATC	3 cut(s)	144, 723, 918
NheI	GCTAGC	1 cut(s)	1136
NlaIII	CATG	4 cut(s)	469, 713, 730, 1036
NlaIV	GGNNCC	4 cut(s)	80, 117, 533, 733
NmeAIII	GCCGAG	1 cut(s)	1195
NmuCI	GTSAC	1 cut(s)	350
NsbI	TGCGCA	1 cut(s)	1115
NspV	TTCGAA	3 cut(s)	63, 626, 644
PfeI	GAWTC	4 cut(s)	24, 403, 641, 1013
PleI	GAGTC	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	815
PshAI	GACNNNNGTC	1 cut(s)	939
PsiI	TTATAA	1 cut(s)	1074
Psp124BI	GAGCTC	1 cut(s)	973
Psp6I	CCWGG	2 cut(s)	295, 900
PspEI	GGTNACC	1 cut(s)	350
PspGI	CCWGG	2 cut(s)	295, 900
PspN4I	GGNNCC	4 cut(s)	80, 117, 533, 733
PspPI	GGNCC	2 cut(s)	689, 1218
PstNI	CAGNNNCTG	1 cut(s)	1166
PsuI	RGATCY	2 cut(s)	144, 918
PvuII	CAGCTG	1 cut(s)	1166
RsaI	GTAC	1 cut(s)	733
RsaNI	GTAC	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	973
SaqAI	TTAA	3 cut(s)	180, 255, 330
Sau3AI	GATC	3 cut(s)	144, 723, 918
Sau96I	GGNCC	2 cut(s)	689, 1218
SchI	GAGTC	1 cut(s)	816
ScrFI	CCNGG	2 cut(s)	297, 902
SduI	GDGCHC	2 cut(s)	41, 973
SfaNI	GCATC	6 cut(s)	549, 936, 989, 1101, 1123, 1159
SfcI	CTRYAG	1 cut(s)	796
SfuI	TTCGAA	3 cut(s)	63, 626, 644
Sse9I	AATT	6 cut(s)	59, 205, 274, 376, 417, 461
SsiI	CCGC	3 cut(s)	521, 538, 1232
SspMI	CTAG	4 cut(s)	383, 761, 944, 1137
SstI	GAGCTC	1 cut(s)	973
StyD4I	CCNGG	2 cut(s)	295, 900
StyI	CCWWGG	1 cut(s)	553
TaaI	ACNGT	3 cut(s)	587, 941, 1204
TaqI	TCGA	4 cut(s)	63, 626, 639, 644
TasI	AATT	6 cut(s)	59, 205, 274, 376, 417, 461
TfiI	GAWTC	4 cut(s)	24, 403, 641, 1013
Tru1I	TTAA	3 cut(s)	180, 255, 330
Tru9I	TTAA	3 cut(s)	180, 255, 330
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	4 cut(s)	285, 453, 454, 474
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	1 cut(s)	592
XapI	RAATTY	4 cut(s)	59, 205, 274, 461
XbaI	TCTAGA	1 cut(s)	943
XspI	CTAG	4 cut(s)	383, 761, 944, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.