Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004890

Physical Location & Seq

Genomic Coordinates Reverse (-)

25442716 .. 25444682

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013060

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGATATATCGAGACTTCAAGACGTCTAATATCCTGCTTGATTCGAACTACAATGCAAAGCTGTCAGATTTTGGCTTGGCCAAGGATGGGCCAACAGGTGATAAAAGCCAAGTCTCTACTAGGGTGATGGGCGCATATGGATATGCAGCCCCGGAATATCTAGCCATAGAGGATCATGTTCATTTAAGTCCTTACTTGTCCTACATCAGTGGAGCATTAGCAGGTTGTGCGGCTACTGTCGGATCATACCCGTTTGAGCTTCTAAGAACCTTTCTAGCTTCACAGGGGGAACCTAAGAAATGGTTGACCGAGACCTTCGACACACTTCTTACAATAAAAGGCTTGCAATTTGGTACCTATGACACACTTAAGCGCTGGAGCATGATACCTGGAAGGTTTATAATTGAGCTCAATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015101 GO:0015234 GO:0015238 GO:0015605 GO:0015695 GO:0015711 GO:0015748 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030974 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0035461 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045117 GO:0050896 GO:0051179 GO:0051180 GO:0051181 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071934 GO:0072348 GO:0072531 GO:0090422 GO:0090482 GO:0098573 GO:0098655 GO:0098656 GO:1901474 GO:1901682

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

140

Amino Acids

15.48

Weight (kDa)

6.72

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 56	5.1e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 59	8.3e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07570 AT1G07570 AT1G07570 AT1G07570 AT2G28930 AT2G28930 AT2G28930
fragaria_vesca	FvH4_3g36200 FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
malus_domestica	MD00G1012300.v1.1 MD03G1092200.v1.1
prunus_persica	Prupe.6G076200_v2.0.a1
pyrus_communis	pycom03g07390 pycom11g08870
rosa_chinensis	RchiOBHm_Chr5g0064971
rosa_laevigata	RLG00000013060 RLG00000022531 RLG00000023667 RLG00000035745
rosa_multiflora	Rmu_sc0003352.1_g000018
rosa_roxburghii	Rroxscaffold_1G00016340
rosa_rugosa	Rorug05G0366800 Rorug05G0366900 Rorug05G0367000
rosa_samantha	Rh5AG425400 Rh5BG440300 Rh5CG462900
rosa_wichuraiana	Rw5G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
AatII	GACGTC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	212
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	353
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	2 cut(s)	180, 250
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	1 cut(s)	355
AfeI	AGCGCT	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	4 cut(s)	61, 259, 278, 409
AluI	AGCT	4 cut(s)	61, 259, 278, 409
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	3 cut(s)	6, 118, 305
AlwI	GGATC	2 cut(s)	180, 250
Aor51HI	AGCGCT	1 cut(s)	374
AoxI	GGCC	2 cut(s)	78, 89
ApeKI	GCWGC	1 cut(s)	146
Asp718I	GGTACC	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	134, 375
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	110, 136
AsuII	TTCGAA	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	80, 121
BciT130I	CCWGG	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	3 cut(s)	6, 118, 305
BfaI	CTAG	3 cut(s)	120, 161, 275
BfoI	RGCGCY	1 cut(s)	376
BfrI	CTTAAG	1 cut(s)	368
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	2 cut(s)	147, 231
BlsI	GCNGC	2 cut(s)	148, 232
Bme1390I	CCNGG	2 cut(s)	152, 390
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	291, 355
BmrFI	CCNGG	2 cut(s)	152, 390
BpmI	CTGGAG	1 cut(s)	397
Bpu14I	TTCGAA	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	2 cut(s)	81, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	81, 150
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	2 cut(s)	80, 91
BshNI	GGYRCC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	3 cut(s)	6, 118, 305
BsnI	GGCC	2 cut(s)	80, 91
Bso31I	GGTCTC	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	172, 242
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	2 cut(s)	80, 91
BspLI	GGNNCC	2 cut(s)	291, 355
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	2 cut(s)	180, 250
BspT104I	TTCGAA	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	81, 150
BssMI	GATC	2 cut(s)	172, 242
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	23
BstAFI	CTTAAG	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	263, 294
BstF5I	GGATG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	2 cut(s)	134, 375
BstKTI	GATC	2 cut(s)	175, 245
BstMAI	GTCTC	3 cut(s)	6, 118, 305
BstMBI	GATC	2 cut(s)	172, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	150, 388
BstV1I	GCAGC	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	80, 91
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	2 cut(s)	134, 375
Cfr13I	GGNCC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	2 cut(s)	176, 382
CviQI	GTAC	1 cut(s)	354
DdeI	CTNAG	2 cut(s)	263, 294
DpnI	GATC	2 cut(s)	174, 244
DpnII	GATC	2 cut(s)	172, 242
EaeI	YGGCCR	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	305
Eco47III	AGCGCT	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	2 cut(s)	179, 385
FatI	CATG	2 cut(s)	175, 381
FauNDI	CATATG	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	147, 231
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	2 cut(s)	147, 231
FspBI	CTAG	3 cut(s)	120, 161, 275
GlaI	GCGC	2 cut(s)	133, 374
GluI	GCNGC	2 cut(s)	147, 231
GsuI	CTGGAG	1 cut(s)	397
HaeII	RGCGCY	1 cut(s)	376
HaeIII	GGCC	2 cut(s)	80, 91
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	2 cut(s)	134, 375
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	179, 385
Hin6I	GCGC	2 cut(s)	132, 373
HinP1I	GCGC	2 cut(s)	132, 373
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	110, 136
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	2 cut(s)	67, 242
Hpy188III	TCNNGA	2 cut(s)	11, 19
Hpy8I	GTNNAC	1 cut(s)	306
HpyAV	CCTTC	2 cut(s)	325, 387
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	56, 146, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	263, 294
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	179, 385
HspAI	GCGC	2 cut(s)	132, 373
KpnI	GGTACC	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	172, 242
LmnI	GCTCC	2 cut(s)	212, 378
LpnPI	CCDG	8 cut(s)	47, 81, 165, 207, 269, 361, 375, 402
Lsp1109I	GCAGC	1 cut(s)	158
MaeI	CTAG	3 cut(s)	120, 161, 275
MaeII	ACGT	1 cut(s)	23
MalI	GATC	2 cut(s)	174, 244
MboI	GATC	2 cut(s)	172, 242
MhlI	GDGCHC	1 cut(s)	411
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	2 cut(s)	347, 402
MluNI	TGGCCA	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	163
Mox20I	TGGCCA	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	2 cut(s)	185, 369
Msp20I	TGGCCA	1 cut(s)	80
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	152, 390
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	152
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	2 cut(s)	172, 242
NlaIII	CATG	2 cut(s)	179, 385
NlaIV	GGNNCC	2 cut(s)	291, 355
NspV	TTCGAA	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	148, 232
PsiI	TTATAA	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	291, 355
PspPI	GGNCC	1 cut(s)	89
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	2 cut(s)	185, 369
SatI	GCNGC	2 cut(s)	147, 231
Sau3AI	GATC	2 cut(s)	172, 242
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	152, 390
SduI	GDGCHC	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	347, 402
SsiI	CCGC	1 cut(s)	230
SspMI	CTAG	3 cut(s)	120, 161, 275
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	150, 388
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	10, 44, 318
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	2 cut(s)	347, 402
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	185, 369
Tru9I	TTAA	2 cut(s)	185, 369
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	214
Vha464I	CTTAAG	1 cut(s)	368
XspI	CTAG	3 cut(s)	120, 161, 275
ZraI	GACGTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.