Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004890

Physical Location & Seq

Genomic Coordinates Reverse (-)

26875477 .. 26879055

Gene Structure 3579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023667

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCAGTACAAGCAGCAAGTCTCATCATTTTCAGCACCTCCAACTCCTCAGACAGAGGGGAGATCTTGCAGTCATCCAATTTGAGGAGCTTTAGTTTCTCTGACCTCAAATTGGCCACTAGGAATTTCCGTCCTGATAGTGTGTTAGGAGAATGCGGCTTTGGTTATGTTTTTAAAGGGTGGATTGATGAAAATTCATTTACAGCTGCAAAGCCTGGGATTGGCATAGTTTTGGCAAAAGTGAATTATTTGGGGCAGTTCTATCATCCTAATCTTGTGAAACTAATTGGCTATTGCTTGGAAGATGAGCAGCGCCTTTTGGGAGGTTCTTATTTTCAACCTCTTTCTTGGACCCTCCGGATGAAGGTTGCCCTTGGTGCTGCAAAGGGGCTTGCCTTTTTGCATAGTGCTGAAACAAGGATGATATATCGAGACTTCAAGTCGTCTAATATCCTGCTTGATTCGGATGGGCCAACAGGTGATAAAAGCCACGTCTCTAATAGGGTGATGGGCGCATATGGATATGCAGCCCCGGAATATCTAGCCATAGAGGATCATGTTCATTTAAGTCCTTACTTGTCCTACATCAGTGGAGCATTAGCAGGTTGTGCGGCTACTGTCGGATCATACCCGTTTGAGCTTCTAAGAAACTTTCTAGCTTCACAGGGGGAACCTAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

228

Amino Acids

24.8

Weight (kDa)

6.96

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	77 - 181	3.4e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07570 AT1G07570 AT1G07570 AT1G07570 AT2G28930 AT2G28930 AT2G28930
fragaria_vesca	FvH4_3g36200 FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
malus_domestica	MD00G1012300.v1.1 MD03G1092200.v1.1
prunus_persica	Prupe.6G076200_v2.0.a1
pyrus_communis	pycom03g07390 pycom11g08870
rosa_chinensis	RchiOBHm_Chr5g0064971
rosa_laevigata	RLG00000013060 RLG00000022531 RLG00000023667 RLG00000035745
rosa_multiflora	Rmu_sc0003352.1_g000018
rosa_roxburghii	Rroxscaffold_1G00016340
rosa_rugosa	Rorug05G0366800 Rorug05G0366900 Rorug05G0367000
rosa_samantha	Rh5AG425400 Rh5BG440300 Rh5CG462900
rosa_wichuraiana	Rw5G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	593
AccIII	TCCGGA	1 cut(s)	357
AciI	CCGC	2 cut(s)	156, 611
AclWI	GGATC	2 cut(s)	561, 631
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	124, 193
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	4 cut(s)	84, 112, 221, 364
AgsI	TTSAA	2 cut(s)	338, 439
AhdI	GACNNNNNGTC	1 cut(s)	439
AjiI	CACGTC	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AluBI	AGCT	4 cut(s)	90, 206, 640, 659
AluI	AGCT	4 cut(s)	90, 206, 640, 659
Alw26I	GTCTC	3 cut(s)	26, 426, 499
AlwI	GGATC	2 cut(s)	561, 631
Aor13HI	TCCGGA	1 cut(s)	357
AoxI	GGCC	2 cut(s)	114, 470
ApeKI	GCWGC	5 cut(s)	14, 206, 310, 380, 527
ApoI	RAATTY	2 cut(s)	124, 193
AspLEI	GCGC	2 cut(s)	315, 515
AspS9I	GGNCC	2 cut(s)	351, 470
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	491, 517
AvaII	GGWCC	1 cut(s)	351
AxyI	CCTNAGG	1 cut(s)	675
BalI	TGGCCA	1 cut(s)	116
BbvI	GCAGC	5 cut(s)	26, 193, 322, 367, 539
BccI	CCATC	2 cut(s)	461, 502
BciT130I	CCWGG	1 cut(s)	216
BcnI	CCSGG	1 cut(s)	533
BcoDI	GTCTC	3 cut(s)	26, 426, 499
BfaI	CTAG	3 cut(s)	120, 542, 656
BfoI	RGCGCY	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	593
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	7 cut(s)	15, 157, 207, 311, 381, 528, 612
BlsI	GCNGC	7 cut(s)	16, 158, 208, 312, 382, 529, 613
Bme1390I	CCNGG	2 cut(s)	216, 533
Bme18I	GGWCC	1 cut(s)	351
BmeRI	GACNNNNNGTC	1 cut(s)	439
BmgBI	CACGTC	1 cut(s)	493
BmgT120I	GGNCC	2 cut(s)	351, 470
BmiI	GGNNCC	2 cut(s)	353, 672
BmrFI	CCNGG	2 cut(s)	216, 533
BpuMI	CCSGG	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	215, 373, 531
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 112, 221, 364
Bse21I	CCTNAGG	1 cut(s)	675
BseAI	TCCGGA	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	3 cut(s)	215, 373, 531
BseGI	GGATG	5 cut(s)	74, 265, 366, 426, 472
BseLI	CCNNNNNNNGG	4 cut(s)	84, 112, 221, 364
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	37, 100
BseXI	GCAGC	5 cut(s)	26, 193, 322, 367, 539
BshFI	GGCC	2 cut(s)	116, 472
BsiSI	CCGG	2 cut(s)	358, 533
BslI	CCNNNNNNNGG	4 cut(s)	84, 112, 221, 364
BsmAI	GTCTC	3 cut(s)	26, 426, 499
BsmBI	CGTCTC	1 cut(s)	499
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	116, 472
Bsp13I	TCCGGA	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	63, 553, 623
BspACI	CCGC	2 cut(s)	156, 611
BspANI	GGCC	2 cut(s)	116, 472
BspCNI	CTCAG	1 cut(s)	62
BspEI	TCCGGA	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	353, 672
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	2 cut(s)	561, 631
BssECI	CCNNGG	3 cut(s)	215, 373, 531
BssMI	GATC	3 cut(s)	63, 553, 623
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	619
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	3 cut(s)	49, 644, 675
BstF5I	GGATG	5 cut(s)	74, 265, 366, 426, 472
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	2 cut(s)	315, 515
BstKTI	GATC	3 cut(s)	66, 556, 626
BstMAI	GTCTC	3 cut(s)	26, 426, 499
BstMBI	GATC	3 cut(s)	63, 553, 623
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 377, 608
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	214, 531
BstV1I	GCAGC	5 cut(s)	26, 193, 322, 367, 539
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
Bsu36I	CCTNAGG	1 cut(s)	675
BsuRI	GGCC	2 cut(s)	116, 472
BtrI	CACGTC	1 cut(s)	493
BtsCI	GGATG	5 cut(s)	74, 265, 366, 426, 472
BtsIMutI	CAGTG	1 cut(s)	595
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	2 cut(s)	315, 515
Cfr13I	GGNCC	2 cut(s)	351, 470
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	1 cut(s)	557
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	3 cut(s)	49, 644, 675
DpnI	GATC	3 cut(s)	65, 555, 625
DpnII	GATC	3 cut(s)	63, 553, 623
DraI	TTTAAA	1 cut(s)	175
DriI	GACNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	114
Eam1105I	GACNNNNNGTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	351
Eco81I	CCTNAGG	1 cut(s)	675
EcoRII	CCWGG	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	499
FaeI	CATG	1 cut(s)	560
FatI	CATG	1 cut(s)	556
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	7 cut(s)	15, 157, 207, 311, 381, 528, 612
FokI	GGATG	5 cut(s)	61, 252, 373, 433, 479
Fsp4HI	GCNGC	7 cut(s)	15, 157, 207, 311, 381, 528, 612
FspBI	CTAG	3 cut(s)	120, 542, 656
GlaI	GCGC	2 cut(s)	314, 514
GluI	GCNGC	7 cut(s)	15, 157, 207, 311, 381, 528, 612
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	116, 472
HapII	CCGG	2 cut(s)	358, 533
HhaI	GCGC	2 cut(s)	315, 515
Hin1II	CATG	1 cut(s)	560
Hin6I	GCGC	2 cut(s)	313, 513
HinP1I	GCGC	2 cut(s)	313, 513
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	2 cut(s)	358, 533
HphI	GGTGA	2 cut(s)	491, 517
Hpy188I	TCNGA	4 cut(s)	52, 103, 466, 623
Hpy188III	TCNNGA	3 cut(s)	134, 358, 431
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	5 cut(s)	70, 209, 383, 403, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 377, 608
HpyF3I	CTNAG	3 cut(s)	49, 644, 675
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	1 cut(s)	560
HspAI	GCGC	2 cut(s)	313, 513
Kpn2I	TCCGGA	1 cut(s)	357
Kzo9I	GATC	3 cut(s)	63, 553, 623
LmnI	GCTCC	2 cut(s)	87, 593
LpnPI	CCDG	9 cut(s)	147, 201, 228, 371, 462, 467, 546, 588, 650
Lsp1109I	GCAGC	5 cut(s)	26, 193, 322, 367, 539
MaeI	CTAG	3 cut(s)	120, 542, 656
MaeII	ACGT	1 cut(s)	492
MalI	GATC	3 cut(s)	65, 555, 625
MboI	GATC	3 cut(s)	63, 553, 623
MboII	GAAGA	1 cut(s)	314
MflI	RGATCY	1 cut(s)	63
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	6 cut(s)	79, 110, 124, 193, 244, 285
MluNI	TGGCCA	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	66, 601
MnlI	CCTC	9 cut(s)	49, 50, 58, 78, 116, 317, 351, 365, 544
Mox20I	TGGCCA	1 cut(s)	116
MroI	TCCGGA	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	2 cut(s)	174, 566
Msp20I	TGGCCA	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	358, 533
MspR9I	CCNGG	2 cut(s)	216, 533
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	11, 377, 608
NciI	CCSGG	1 cut(s)	533
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	3 cut(s)	63, 553, 623
NlaIII	CATG	1 cut(s)	560
NlaIV	GGNNCC	2 cut(s)	353, 672
PctI	GAATGC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	7 cut(s)	16, 158, 208, 312, 382, 529, 613
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	353, 672
PspPI	GGNCC	2 cut(s)	351, 470
PsuI	RGATCY	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	174, 566
SatI	GCNGC	7 cut(s)	15, 157, 207, 311, 381, 528, 612
Sau3AI	GATC	3 cut(s)	63, 553, 623
Sau96I	GGNCC	2 cut(s)	351, 470
ScrFI	CCNGG	2 cut(s)	216, 533
SinI	GGWCC	1 cut(s)	351
Sse9I	AATT	6 cut(s)	79, 110, 124, 193, 244, 285
SsiI	CCGC	2 cut(s)	156, 611
SspMI	CTAG	3 cut(s)	120, 542, 656
StyD4I	CCNGG	2 cut(s)	214, 531
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	430
TasI	AATT	6 cut(s)	79, 110, 124, 193, 244, 285
TatI	WGTACW	1 cut(s)	7
TauI	GCSGC	2 cut(s)	159, 614
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	2 cut(s)	174, 566
Tru9I	TTAA	2 cut(s)	174, 566
TscAI	CASTG	1 cut(s)	595
TseI	GCWGC	5 cut(s)	14, 206, 310, 380, 527
TspDTI	ATGAA	4 cut(s)	186, 204, 377, 551
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	351
XapI	RAATTY	2 cut(s)	124, 193
XspI	CTAG	3 cut(s)	120, 542, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.