Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004890

Physical Location & Seq

Genomic Coordinates Reverse (-)

2933502 .. 2934598

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022531

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGCAGCGCCTTTTGGATATATGAATTCATGCCTCGAGGCAGCCTGGAAAATCATTTGTTCAGTAGAGGTTCTTATTTTCAACCTCTTTCTTGGACCCTCCGGATGAAGGTTGCCCTTGGTGCTGCAAAGGGGCTTGCCTTTTTGCATAGTGCTGAAACAAGGATGATATATCGAGACTTCAAGACGTCTAATATCCTGCTTGATTCGAACTACAATGCAAAGCTGTCAGATTTTGGCTTGGCCAAGGATGGGCCAACAGGTGATAAAAGCCACGTCTCTACTAGGGTGATGGGCGCATATGGATATGCAGCCCCGGAATATCTAGCCATAGAGGATCATGTTCATTTAAGTCCTTACTTGTCCTACATCAGTGGAGCATTAGCAGGTTGTGCGGCTACTGTCGGATCATACCCGTTTGAGCTTCTAAGAACCTTTCTAGCTTCACAGGGGGAACCTAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0010119 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1902456 GO:1902458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

156

Amino Acids

17.1

Weight (kDa)

7.86

Isoelectric Point (pI)

30.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 113	1.2e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 111	1.3e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07570 AT1G07570 AT1G07570 AT1G07570 AT2G28930 AT2G28930 AT2G28930
fragaria_vesca	FvH4_3g36200 FvH4_3g36200 FvH4_3g36200 FvH4_3g36200
malus_domestica	MD00G1012300.v1.1 MD03G1092200.v1.1
prunus_persica	Prupe.6G076200_v2.0.a1
pyrus_communis	pycom03g07390 pycom11g08870
rosa_chinensis	RchiOBHm_Chr5g0064971
rosa_laevigata	RLG00000013060 RLG00000022531 RLG00000023667 RLG00000035745
rosa_multiflora	Rmu_sc0003352.1_g000018
rosa_roxburghii	Rroxscaffold_1G00016340
rosa_rugosa	Rorug05G0366800 Rorug05G0366900 Rorug05G0367000
rosa_samantha	Rh5AG425400 Rh5BG440300 Rh5CG462900
rosa_wichuraiana	Rw5G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	191
AbsI	CCTCGAGG	1 cut(s)	36
Acc36I	ACCTGC	1 cut(s)	377
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	2 cut(s)	345, 415
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	109, 252
AgsI	TTSAA	2 cut(s)	83, 184
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	3 cut(s)	226, 424, 443
AluI	AGCT	3 cut(s)	226, 424, 443
Alw26I	GTCTC	2 cut(s)	171, 283
AlwI	GGATC	2 cut(s)	345, 415
Ama87I	CYCGRG	1 cut(s)	36
Aor13HI	TCCGGA	1 cut(s)	102
AoxI	GGCC	2 cut(s)	243, 254
ApeKI	GCWGC	4 cut(s)	6, 42, 125, 311
ApoI	RAATTY	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	11, 299
AspS9I	GGNCC	2 cut(s)	96, 254
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	275, 301
AsuII	TTCGAA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	96
AxyI	CCTNAGG	1 cut(s)	459
BalI	TGGCCA	1 cut(s)	245
BbvI	GCAGC	4 cut(s)	18, 54, 112, 323
BccI	CCATC	2 cut(s)	245, 286
BciT130I	CCWGG	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	2 cut(s)	171, 283
BfaI	CTAG	3 cut(s)	285, 326, 440
BfoI	RGCGCY	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	377
BisI	GCNGC	5 cut(s)	7, 43, 126, 312, 396
BlsI	GCNGC	5 cut(s)	8, 44, 127, 313, 397
Bme1390I	CCNGG	2 cut(s)	47, 317
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	96, 254
BmiI	GGNNCC	2 cut(s)	98, 456
BmrFI	CCNGG	2 cut(s)	47, 317
Bpu14I	TTCGAA	1 cut(s)	209
BpuMI	CCSGG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	118, 246, 315
BsaWI	WCCGGW	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 252
Bse21I	CCTNAGG	1 cut(s)	459
BseAI	TCCGGA	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	3 cut(s)	118, 246, 315
BseGI	GGATG	3 cut(s)	111, 171, 256
BseLI	CCNNNNNNNGG	2 cut(s)	109, 252
BseXI	GCAGC	4 cut(s)	18, 54, 112, 323
BshFI	GGCC	2 cut(s)	245, 256
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	103, 317
BslI	CCNNNNNNNGG	2 cut(s)	109, 252
BsmAI	GTCTC	2 cut(s)	171, 283
BsmBI	CGTCTC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	245, 256
BsoBI	CYCGRG	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	209
Bsp13I	TCCGGA	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	337, 407
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	2 cut(s)	245, 256
BspEI	TCCGGA	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	98, 456
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	2 cut(s)	345, 415
BspT104I	TTCGAA	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	118, 246, 315
BssMI	GATC	2 cut(s)	337, 407
BssNI	GRCGYC	1 cut(s)	188
BssT1I	CCWWGG	2 cut(s)	118, 246
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	403
BstACI	GRCGYC	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	428, 459
BstF5I	GGATG	3 cut(s)	111, 171, 256
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	11, 299
BstKTI	GATC	2 cut(s)	340, 410
BstMAI	GTCTC	2 cut(s)	171, 283
BstMBI	GATC	2 cut(s)	337, 407
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 392
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	45, 315
BstV1I	GCAGC	4 cut(s)	18, 54, 112, 323
Bsu36I	CCTNAGG	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	245, 256
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	111, 171, 256
BtsIMutI	CAGTG	1 cut(s)	379
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	2 cut(s)	11, 299
Cfr13I	GGNCC	2 cut(s)	96, 254
CviAII	CATG	2 cut(s)	31, 341
DdeI	CTNAG	2 cut(s)	428, 459
DpnI	GATC	2 cut(s)	339, 409
DpnII	GATC	2 cut(s)	337, 407
EaeI	YGGCCR	1 cut(s)	243
Eco130I	CCWWGG	2 cut(s)	118, 246
Eco47I	GGWCC	1 cut(s)	96
Eco81I	CCTNAGG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	2 cut(s)	118, 246
ErhI	CCWWGG	2 cut(s)	118, 246
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	2 cut(s)	34, 344
FatI	CATG	2 cut(s)	30, 340
FauNDI	CATATG	1 cut(s)	301
Fnu4HI	GCNGC	5 cut(s)	7, 43, 126, 312, 396
FokI	GGATG	3 cut(s)	118, 178, 263
Fsp4HI	GCNGC	5 cut(s)	7, 43, 126, 312, 396
FspBI	CTAG	3 cut(s)	285, 326, 440
GlaI	GCGC	2 cut(s)	10, 298
GluI	GCNGC	5 cut(s)	7, 43, 126, 312, 396
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	245, 256
HapII	CCGG	2 cut(s)	103, 317
HhaI	GCGC	2 cut(s)	11, 299
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	34, 344
Hin6I	GCGC	2 cut(s)	9, 297
HinP1I	GCGC	2 cut(s)	9, 297
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	2 cut(s)	103, 317
HphI	GGTGA	2 cut(s)	275, 301
Hpy188I	TCNGA	2 cut(s)	232, 407
Hpy188III	TCNNGA	3 cut(s)	103, 176, 184
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	2 cut(s)	188, 276
HpyCH4V	TGCA	4 cut(s)	128, 148, 221, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 392
HpyF3I	CTNAG	2 cut(s)	428, 459
HpySE526I	ACGT	2 cut(s)	188, 276
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	2 cut(s)	34, 344
HspAI	GCGC	2 cut(s)	9, 297
Kpn2I	TCCGGA	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	337, 407
LmnI	GCTCC	1 cut(s)	377
LpnPI	CCDG	8 cut(s)	32, 59, 116, 212, 246, 330, 372, 434
Lsp1109I	GCAGC	4 cut(s)	18, 54, 112, 323
MaeI	CTAG	3 cut(s)	285, 326, 440
MaeII	ACGT	2 cut(s)	188, 276
MalI	GATC	2 cut(s)	339, 409
MboI	GATC	2 cut(s)	337, 407
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	6 cut(s)	32, 45, 62, 96, 110, 328
Mox20I	TGGCCA	1 cut(s)	245
MroI	TCCGGA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	350
Msp20I	TGGCCA	1 cut(s)	245
MspI	CCGG	2 cut(s)	103, 317
MspR9I	CCNGG	2 cut(s)	47, 317
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	122, 392
NciI	CCSGG	1 cut(s)	317
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	2 cut(s)	337, 407
NlaIII	CATG	2 cut(s)	34, 344
NlaIV	GGNNCC	2 cut(s)	98, 456
NspV	TTCGAA	1 cut(s)	209
PaeR7I	CTCGAG	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	5 cut(s)	8, 44, 127, 313, 397
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	98, 456
PspPI	GGNCC	2 cut(s)	96, 254
PspXI	VCTCGAGB	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	5 cut(s)	7, 43, 126, 312, 396
Sau3AI	GATC	2 cut(s)	337, 407
Sau96I	GGNCC	2 cut(s)	96, 254
ScrFI	CCNGG	2 cut(s)	47, 317
Sfr274I	CTCGAG	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	395
SspMI	CTAG	3 cut(s)	285, 326, 440
StyD4I	CCNGG	2 cut(s)	45, 315
StyI	CCWWGG	2 cut(s)	118, 246
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	2 cut(s)	191, 279
TaqI	TCGA	3 cut(s)	37, 175, 209
TasI	AATT	1 cut(s)	26
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	4 cut(s)	6, 42, 125, 311
TspDTI	ATGAA	4 cut(s)	19, 39, 122, 335
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	96
XapI	RAATTY	1 cut(s)	26
XhoI	CTCGAG	1 cut(s)	36
XspI	CTAG	3 cut(s)	285, 326, 440
ZraI	GACGTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.