Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Forward (+)

12616378 .. 12617987

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAATTGGAGCAAATCTGCATTTTGAAACCCGATGATGAGGAAGAAATGGAGTCACCATCACCATCGAAAACAGAGGAAAATTTAGGCGTGGTTCCTCTGTCTTGCGCGTTTACGAGACAAGAACATTGCGTTTCCGAGACGAAAGAACGCGAAGAATCGACTAGAAGACTAAGCAGCCTTATTTTTCTTTACCTCATCGTTATGTCCGTACAGATTGTGGGAGGTTTTAAGGCGAATAGTCTTGCGGTTATGACAGATGCTGCGCATTTGTTGTCGGATGTGGCGGGTTTGTGTGTCTCTTTGTTGGCGATCAAGGTCTCGAGCTGGGAAGCTAATCCGCGAAACTCGTTCGGGTTTAAACGGCTTGAAGTTTTAGCGGCGTTCTTGTCTGTTCAGCTCATATGGCTTGTCTCTGGAGTGATAATCCATGAAGCCATTCAAAGACTACTTAGCAGAAGCAGAGAGGTTAATGGAGAAATCATGTTTGGGATTTCGGCTTTCGGGTTTTTCATGAACTTGGTTATGGTCCTTTGGTTAGGACATAACCATAGCCACCACCACCACGACCATCATCACCATCATCATAATCATAAACATCAACATCAACATCATCACAAGGAGGTGGTGGCAGAAGAGGAGGAGGAGGAAATGAATCCTTTAAAAGGTGAGAAATCGTCTTCAAAGGAGATGAACATTAACATACAAGGAGCTTATCTTCACGCAATGGCTGATATGATTCAGTCACTAGGTGTTATGATTGGTGGAGGTATCATTTGGGTAAAACCAAAATGGGTTTTGGTTGATTTGATTTGCACTCTTGTTTTCTCTGCTTTTGCTCTTGCTGCTACTCTACCAATTCTCAAGAACATATTTGGAATACTGATGGAACGCGTACCGCGTGATATGGACATAGAGAAGCTCGAAAGAGGACTTAAGCGAATCGATGGAGTTAAGATTGTTTATGATCTCCATGTATGGGAGATAACAGTAGGGAGAATCGTATTGTCCTGTCATATCTTACCAGAGCCTGGAGCTAGTCCTAAAGAGATCATTACTGGTGTTAGAAATTTCTGTAGGAAGTCTTATGGGATTTATCATGCAACTGTTCAGGTTGAATCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

375

Amino Acids

42.34

Weight (kDa)

6.13

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	62 - 296	1e-39	Cation efflux transmembrane domain
ZT_dimer	PF16916	300 - 374	1.5e-09	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	267
AccB7I	CCANNNNNTGG	1 cut(s)	1031
AccII	CGCG	5 cut(s)	110, 153, 343, 894, 901
AciI	CCGC	5 cut(s)	248, 287, 341, 380, 899
AcsI	RAATTY	2 cut(s)	82, 1069
AdeI	CACNNNGTG	1 cut(s)	752
AfaI	GTAC	2 cut(s)	213, 897
AfiI	CCNNNNNNNGG	3 cut(s)	665, 979, 1031
AflII	CTTAAG	1 cut(s)	935
AflIII	ACRYGT	1 cut(s)	892
AgsI	TTSAA	5 cut(s)	28, 371, 443, 684, 1118
AjnI	CCWGG	1 cut(s)	1030
AjuI	GAANNNNNNNTTGG	2 cut(s)	471, 503
AluBI	AGCT	6 cut(s)	327, 335, 400, 713, 922, 1037
AluI	AGCT	6 cut(s)	327, 335, 400, 713, 922, 1037
Alw26I	GTCTC	5 cut(s)	112, 134, 304, 325, 418
AlwNI	CAGNNNCTG	2 cut(s)	263, 1031
Ama87I	CYCGRG	1 cut(s)	322
ApeKI	GCWGC	3 cut(s)	177, 263, 845
ApoI	RAATTY	2 cut(s)	82, 1069
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	110, 268
AspS9I	GGNCC	1 cut(s)	529
AsuHPI	GGTGA	4 cut(s)	48, 54, 569, 680
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	529
BbsI	GAAGAC	2 cut(s)	175, 672
BbvI	GCAGC	3 cut(s)	189, 250, 832
BccI	CCATC	6 cut(s)	67, 73, 579, 588, 880, 941
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	1032
BcoDI	GTCTC	5 cut(s)	112, 134, 304, 325, 418
BfaI	CTAG	3 cut(s)	165, 749, 1038
BfmI	CTRYAG	1 cut(s)	1075
BfrI	CTTAAG	1 cut(s)	935
BisI	GCNGC	4 cut(s)	178, 264, 381, 846
BlsI	GCNGC	4 cut(s)	179, 265, 382, 847
Bme1390I	CCNGG	1 cut(s)	1032
Bme18I	GGWCC	1 cut(s)	529
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	1032
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	2 cut(s)	175, 672
BpmI	CTGGAG	2 cut(s)	438, 1053
BpuEI	CTTGAG	1 cut(s)	848
Bsa29I	ATCGAT	1 cut(s)	945
BsaI	GGTCTC	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	3 cut(s)	665, 979, 1031
Bse1I	ACTGG	1 cut(s)	1063
Bse3DI	GCAATG	2 cut(s)	127, 732
BseBI	CCWGG	1 cut(s)	1032
BseCI	ATCGAT	1 cut(s)	945
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	3 cut(s)	665, 979, 1031
BseMI	GCAATG	2 cut(s)	127, 732
BseNI	ACTGG	1 cut(s)	1063
BseRI	GAGGAG	3 cut(s)	653, 656, 659
BseXI	GCAGC	3 cut(s)	189, 250, 832
BseYI	CCCAGC	1 cut(s)	327
Bsh1236I	CGCG	5 cut(s)	110, 153, 343, 894, 901
BshVI	ATCGAT	1 cut(s)	945
BsiHKCI	CYCGRG	1 cut(s)	322
BslI	CCNNNNNNNGG	3 cut(s)	665, 979, 1031
BsmAI	GTCTC	5 cut(s)	112, 134, 304, 325, 418
BsmBI	CGTCTC	1 cut(s)	134
Bso31I	GGTCTC	1 cut(s)	325
BsoBI	CYCGRG	1 cut(s)	322
Bsp143I	GATC	3 cut(s)	312, 967, 1050
BspACI	CCGC	5 cut(s)	248, 287, 341, 380, 899
BspDI	ATCGAT	1 cut(s)	945
BspFNI	CGCG	5 cut(s)	110, 153, 343, 894, 901
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	1 cut(s)	96
BspTI	CTTAAG	1 cut(s)	935
BspTNI	GGTCTC	1 cut(s)	325
BsrDI	GCAATG	2 cut(s)	127, 732
BsrI	ACTGG	1 cut(s)	1063
BssMI	GATC	3 cut(s)	312, 967, 1050
Bst2UI	CCWGG	1 cut(s)	1032
Bst4CI	ACNGT	2 cut(s)	991, 1108
Bst6I	CTCTTC	1 cut(s)	630
BstAFI	CTTAAG	1 cut(s)	935
BstDEI	CTNAG	2 cut(s)	173, 452
BstENI	CCTNNNNNAGG	1 cut(s)	663
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	5 cut(s)	110, 153, 343, 894, 901
BstHHI	GCGC	2 cut(s)	110, 268
BstKTI	GATC	3 cut(s)	315, 970, 1053
BstMAI	GTCTC	5 cut(s)	112, 134, 304, 325, 418
BstMBI	GATC	3 cut(s)	312, 967, 1050
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 845
BstNI	CCWGG	1 cut(s)	1032
BstSCI	CCNGG	1 cut(s)	1030
BstSFI	CTRYAG	1 cut(s)	1075
BstUI	CGCG	5 cut(s)	110, 153, 343, 894, 901
BstV1I	GCAGC	3 cut(s)	189, 250, 832
BstV2I	GAAGAC	2 cut(s)	175, 672
Bsu15I	ATCGAT	1 cut(s)	945
BsuTUI	ATCGAT	1 cut(s)	945
BtsCI	GGATG	1 cut(s)	286
CaiI	CAGNNNCTG	2 cut(s)	263, 1031
CciI	TCATGA	1 cut(s)	513
CfoI	GCGC	2 cut(s)	110, 268
Cfr13I	GGNCC	1 cut(s)	529
ClaI	ATCGAT	1 cut(s)	945
Csp6I	GTAC	2 cut(s)	212, 896
CviAII	CATG	5 cut(s)	431, 484, 514, 974, 1100
CviQI	GTAC	2 cut(s)	212, 896
DdeI	CTNAG	2 cut(s)	173, 452
DpnI	GATC	3 cut(s)	314, 969, 1052
DpnII	GATC	3 cut(s)	312, 967, 1050
DraI	TTTAAA	2 cut(s)	361, 663
DraIII	CACNNNGTG	1 cut(s)	752
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	529
Eco88I	CYCGRG	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	1030
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	5 cut(s)	434, 487, 517, 977, 1103
FatI	CATG	5 cut(s)	430, 483, 513, 973, 1099
FauI	CCCGC	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	404
Fnu4HI	GCNGC	4 cut(s)	178, 264, 381, 846
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	4 cut(s)	178, 264, 381, 846
FspBI	CTAG	3 cut(s)	165, 749, 1038
FspI	TGCGCA	1 cut(s)	267
GlaI	GCGC	2 cut(s)	109, 267
GluI	GCNGC	4 cut(s)	178, 264, 381, 846
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	2 cut(s)	438, 1053
HhaI	GCGC	2 cut(s)	110, 268
Hin1II	CATG	5 cut(s)	434, 487, 517, 977, 1103
Hin6I	GCGC	2 cut(s)	108, 266
HinP1I	GCGC	2 cut(s)	108, 266
HinfI	GANTC	7 cut(s)	53, 158, 655, 739, 942, 999, 1118
HphI	GGTGA	4 cut(s)	48, 54, 569, 680
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	3 cut(s)	139, 280, 1123
Hpy188III	TCNNGA	4 cut(s)	322, 417, 514, 865
Hpy8I	GTNNAC	1 cut(s)	114
HpyCH4III	ACNGT	2 cut(s)	991, 1108
HpyCH4V	TGCA	3 cut(s)	21, 816, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 845
HpyF3I	CTNAG	2 cut(s)	173, 452
Hsp92II	CATG	5 cut(s)	434, 487, 517, 977, 1103
HspAI	GCGC	2 cut(s)	108, 266
Kzo9I	GATC	3 cut(s)	312, 967, 1050
LmnI	GCTCC	3 cut(s)	10, 710, 1034
LpnPI	CCDG	8 cut(s)	313, 402, 1017, 1024, 1038, 1044, 1044, 1097
Lsp1109I	GCAGC	3 cut(s)	189, 250, 832
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	3 cut(s)	165, 749, 1038
MaeIII	GTNAC	2 cut(s)	54, 744
MalI	GATC	3 cut(s)	314, 969, 1052
MboI	GATC	3 cut(s)	312, 967, 1050
MboII	GAAGA	6 cut(s)	56, 167, 180, 647, 672, 710
MluCI	AATT	4 cut(s)	5, 82, 858, 1069
MluI	ACGCGT	1 cut(s)	892
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	7 cut(s)	231, 360, 471, 662, 699, 936, 954
MslI	CAYNNNNRTG	1 cut(s)	203
MspCI	CTTAAG	1 cut(s)	935
MspR9I	CCNGG	1 cut(s)	1032
MssI	GTTTAAAC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	1032
MvnI	CGCG	5 cut(s)	110, 153, 343, 894, 901
MwoI	GCNNNNNNNGC	2 cut(s)	406, 845
NdeI	CATATG	1 cut(s)	404
NdeII	GATC	3 cut(s)	312, 967, 1050
NlaIII	CATG	5 cut(s)	434, 487, 517, 977, 1103
NlaIV	GGNNCC	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	54, 744
NsbI	TGCGCA	1 cut(s)	267
PaeR7I	CTCGAG	1 cut(s)	322
PagI	TCATGA	1 cut(s)	513
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 898
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	6 cut(s)	158, 655, 739, 942, 999, 1118
PflMI	CCANNNNNTGG	1 cut(s)	1031
PkrI	GCNGC	4 cut(s)	179, 265, 382, 847
PleI	GAGTC	1 cut(s)	61
PmeI	GTTTAAAC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	1030
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	1030
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	529
PstNI	CAGNNNCTG	2 cut(s)	263, 1031
RsaI	GTAC	2 cut(s)	213, 897
RsaNI	GTAC	2 cut(s)	212, 896
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	7 cut(s)	231, 360, 471, 662, 699, 936, 954
SatI	GCNGC	4 cut(s)	178, 264, 381, 846
Sau3AI	GATC	3 cut(s)	312, 967, 1050
Sau96I	GGNCC	1 cut(s)	529
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	1032
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	1075
Sfr274I	CTCGAG	1 cut(s)	322
SinI	GGWCC	1 cut(s)	529
SlaI	CTCGAG	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	3 cut(s)	322, 863, 935
SmoI	CTYRAG	3 cut(s)	322, 863, 935
Sse9I	AATT	4 cut(s)	5, 82, 858, 1069
SsiI	CCGC	5 cut(s)	248, 287, 341, 380, 899
SspMI	CTAG	3 cut(s)	165, 749, 1038
StyD4I	CCNGG	1 cut(s)	1030
TaaI	ACNGT	2 cut(s)	991, 1108
TaqI	TCGA	5 cut(s)	68, 161, 323, 924, 945
TasI	AATT	4 cut(s)	5, 82, 858, 1069
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	6 cut(s)	158, 655, 739, 942, 999, 1118
Tru1I	TTAA	7 cut(s)	231, 360, 471, 662, 699, 936, 954
Tru9I	TTAA	7 cut(s)	231, 360, 471, 662, 699, 936, 954
TseFI	GTSAC	2 cut(s)	54, 744
TseI	GCWGC	3 cut(s)	177, 263, 845
Tsp45I	GTSAC	2 cut(s)	54, 744
TspDTI	ATGAA	5 cut(s)	447, 502, 530, 668, 707
TspGWI	ACGGA	1 cut(s)	199
Van91I	CCANNNNNTGG	1 cut(s)	1031
Vha464I	CTTAAG	1 cut(s)	935
VpaK11BI	GGWCC	1 cut(s)	529
XagI	CCTNNNNNAGG	1 cut(s)	663
XapI	RAATTY	2 cut(s)	82, 1069
XhoI	CTCGAG	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	438
XspI	CTAG	3 cut(s)	165, 749, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.