Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Forward (+)

73102569 .. 73103726

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAGCATGAGAAGGTTCCCTTATCTAGAACAGAGTCCCAGCATGAAATTGAGATCCCGATAGTCTCTGAAAGTATTGATCTTCTGCCTGTGCCACAAAAGTTACCTTGCTCTTCCATCTGTGGTTTCTCCAAGAAAGAAAGCAGTAATTTGGATTCAAAACAACGTTCACAATCAGCAACTAAACTTCGTGTACTCATAATTGTCTATATGTTGTTTATGGTTGTTGAAATTATTGGTGGTGTAAAATCGAACAGCCTGGCAGTACTCACAGATGCAGCCCACATGCTTACTGATGTTAGTGGATTCGCTATTGCTCTTTTTGCAGTAATAGCTTCAGGTTGGGAGGCAACATCATACCAGTCTTTTGGATATCTCCGTCTTGAGGTTTTGAGTGCGCTTCTATCTGTGCAGCTGATATGGGTGGTCGCTGCAATCTTGATCTATGAAGCAGTCAACAGAATGCTTCACAAGCATGCAATGGTCAATGGGGTTCTCATGTTTGCAGTTGCAGCAATTGGATTTTCGGTTAATTTTATCATGGTCATGTGGCTCGGTCACAATCACACTCATCATCATCATCATCATGCTTGTGGAGACTTGGATCATCATCATGATCATGGTCATAATCATAATCATGATCATGGCAAGGAGGAAGCATGCGCAACAATTGAAGGCGATGAAACTAGCTTGGTGTCAATTCCTCCAGTAAAGACTAAAATATTAAACATAAATCTCGAAGGAGCTTACCTGCATGTTATGGCCGACATGATTCAGTCTGTTGGAGTAATGATTGCCGGAGCCATCATTTGGGCGAAGCCAGATTATTTAGTTGTTGATCTGATCTGCACACTCATCTTTTCTGTTTTTGCTGTTAGCACAACTATACCGATGCTCAGAAATACATATGGCATATTGATGCAGAGAACTCCAAGTGAGATTGATATCGACAAGCTACAGAAAGGTCTCAAGTGCATCAAAGGAGTTCAGGATGTTCATGACCTACATGTTTGGGCACTAACAGTTGGAAAAATGGTATTGTCGTGCCATGTCACCGCGGATTCTACAGTAGGCTCAAGTCAGATAATTGATGAGATTAGTGATTTTTGTGAAAAAACTTACAGAATACATGATGTTACTGTACAGATTGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

386

Amino Acids

42.59

Weight (kDa)

5.96

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	64 - 307	1.4e-37	Cation efflux transmembrane domain
ZT_dimer	PF16916	311 - 384	3.2e-14	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	664
Acc36I	ACCTGC	1 cut(s)	759
AccB7I	CCANNNNNTGG	1 cut(s)	810
AccII	CGCG	1 cut(s)	1058
AciI	CCGC	2 cut(s)	1056, 1058
AclI	AACGTT	1 cut(s)	166
AclWI	GGATC	2 cut(s)	49, 612
AcoI	YGGCCR	1 cut(s)	762
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	195, 267, 1143
AfiI	CCNNNNNNNGG	2 cut(s)	385, 810
AflIII	ACRYGT	1 cut(s)	1006
AgsI	TTSAA	4 cut(s)	159, 230, 674, 1151
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	5 cut(s)	335, 415, 690, 746, 955
AluI	AGCT	5 cut(s)	335, 415, 690, 746, 955
Alw26I	GTCTC	3 cut(s)	70, 591, 971
AlwI	GGATC	2 cut(s)	49, 612
AoxI	GGCC	1 cut(s)	762
ApeKI	GCWGC	4 cut(s)	278, 412, 431, 512
AspLEI	GCGC	2 cut(s)	400, 665
AsuHPI	GGTGA	1 cut(s)	1045
BaeGI	GKGCMC	1 cut(s)	1018
BbvI	GCAGC	4 cut(s)	290, 418, 424, 524
BccI	CCATC	2 cut(s)	125, 812
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	2 cut(s)	616, 640
BcoDI	GTCTC	3 cut(s)	70, 591, 971
BfaI	CTAG	2 cut(s)	27, 687
BfmI	CTRYAG	2 cut(s)	956, 1065
BfuAI	ACCTGC	1 cut(s)	759
BisI	GCNGC	4 cut(s)	279, 413, 432, 513
BlsI	GCNGC	4 cut(s)	280, 414, 433, 514
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	18, 802
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	4 cut(s)	265, 882, 909, 984
BpmI	CTGGAG	1 cut(s)	690
BpuEI	CTTGAG	3 cut(s)	404, 953, 1060
BsaBI	GATNNNNATC	2 cut(s)	609, 944
BsaI	GGTCTC	1 cut(s)	971
BsaJI	CCNNGG	1 cut(s)	1056
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 810
Bse1I	ACTGG	2 cut(s)	361, 707
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	2 cut(s)	609, 944
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	1056
BseGI	GGATG	1 cut(s)	997
BseJI	GATNNNNATC	2 cut(s)	609, 944
BseLI	CCNNNNNNNGG	2 cut(s)	385, 810
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	910
BseNI	ACTGG	2 cut(s)	361, 707
BseSI	GKGCMC	1 cut(s)	1018
BseXI	GCAGC	4 cut(s)	290, 418, 424, 524
BseYI	CCCAGC	1 cut(s)	39
BsgI	GTGCAG	2 cut(s)	431, 832
Bsh1236I	CGCG	1 cut(s)	1058
BshFI	GGCC	1 cut(s)	764
BsiSI	CCGG	1 cut(s)	798
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	385, 810
BsmAI	GTCTC	3 cut(s)	70, 591, 971
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	764
Bso31I	GGTCTC	1 cut(s)	971
Bsp1286I	GDGCHC	1 cut(s)	1018
Bsp1407I	TGTACA	1 cut(s)	1141
Bsp143I	GATC	8 cut(s)	54, 79, 441, 604, 616, 640, 838, 843
BspACI	CCGC	2 cut(s)	1056, 1058
BspANI	GGCC	1 cut(s)	764
BspCNI	CTCAG	1 cut(s)	909
BspFNI	CGCG	1 cut(s)	1058
BspHI	TCATGA	3 cut(s)	613, 637, 997
BspLI	GGNNCC	2 cut(s)	18, 802
BspMI	ACCTGC	1 cut(s)	759
BspPI	GGATC	2 cut(s)	49, 612
BspQI	GCTCTTC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	971
BsrDI	GCAATG	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	1141
BsrI	ACTGG	2 cut(s)	361, 707
BssECI	CCNNGG	1 cut(s)	1056
BssMI	GATC	8 cut(s)	54, 79, 441, 604, 616, 640, 838, 843
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	4 cut(s)	1024, 1069, 1141, 1155
Bst6I	CTCTTC	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	1141
BstC8I	GCNNGC	2 cut(s)	477, 661
BstDEI	CTNAG	1 cut(s)	896
BstDSI	CCRYGG	1 cut(s)	1056
BstF5I	GGATG	1 cut(s)	997
BstFNI	CGCG	1 cut(s)	1058
BstHHI	GCGC	2 cut(s)	400, 665
BstKTI	GATC	8 cut(s)	57, 82, 444, 607, 619, 643, 841, 846
BstMAI	GTCTC	3 cut(s)	70, 591, 971
BstMBI	GATC	8 cut(s)	54, 79, 441, 604, 616, 640, 838, 843
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	5 cut(s)	289, 479, 663, 758, 1010
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	2 cut(s)	956, 1065
BstSLI	GKGCMC	1 cut(s)	1018
BstUI	CGCG	1 cut(s)	1058
BstV1I	GCAGC	4 cut(s)	290, 418, 424, 524
BstX2I	RGATCY	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	764
BtgI	CCRYGG	1 cut(s)	1056
BtgZI	GCGATG	1 cut(s)	693
BtsCI	GGATG	1 cut(s)	997
BveI	ACCTGC	1 cut(s)	759
Cac8I	GCNNGC	2 cut(s)	477, 661
CciI	TCATGA	3 cut(s)	613, 637, 997
CfoI	GCGC	2 cut(s)	400, 665
Cfr42I	CCGCGG	1 cut(s)	1059
Csp6I	GTAC	3 cut(s)	194, 266, 1142
CviQI	GTAC	3 cut(s)	194, 266, 1142
DdeI	CTNAG	1 cut(s)	896
DpnI	GATC	8 cut(s)	56, 81, 443, 606, 618, 642, 840, 845
DpnII	GATC	8 cut(s)	54, 79, 441, 604, 616, 640, 838, 843
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	971
Eco32I	GATATC	2 cut(s)	374, 946
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	2 cut(s)	374, 946
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	907
FbaI	TGATCA	2 cut(s)	616, 640
Fnu4HI	GCNGC	4 cut(s)	279, 413, 432, 513
FokI	GGATG	1 cut(s)	1004
Fsp4HI	GCNGC	4 cut(s)	279, 413, 432, 513
FspBI	CTAG	2 cut(s)	27, 687
FspI	TGCGCA	1 cut(s)	664
GlaI	GCGC	2 cut(s)	399, 664
GluI	GCNGC	4 cut(s)	279, 413, 432, 513
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	1 cut(s)	764
HapII	CCGG	1 cut(s)	798
HhaI	GCGC	2 cut(s)	400, 665
Hin6I	GCGC	2 cut(s)	398, 663
HinP1I	GCGC	2 cut(s)	398, 663
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	5 cut(s)	35, 155, 306, 772, 1061
HpaII	CCGG	1 cut(s)	798
HphI	GGTGA	1 cut(s)	1045
Hpy166II	GTNNAC	3 cut(s)	170, 194, 457
Hpy188I	TCNGA	4 cut(s)	70, 843, 899, 1083
Hpy188III	TCNNGA	9 cut(s)	27, 58, 383, 439, 614, 638, 737, 989, 998
Hpy8I	GTNNAC	3 cut(s)	170, 194, 457
HpyAV	CCTTC	3 cut(s)	7, 668, 734
HpyCH4III	ACNGT	4 cut(s)	1024, 1069, 1141, 1155
HpyCH4IV	ACGT	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
HpyF3I	CTNAG	1 cut(s)	896
HpySE526I	ACGT	1 cut(s)	166
HspAI	GCGC	2 cut(s)	398, 663
Ksp22I	TGATCA	2 cut(s)	616, 640
KspI	CCGCGG	1 cut(s)	1059
Kzo9I	GATC	8 cut(s)	54, 79, 441, 604, 616, 640, 838, 843
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	3 cut(s)	4, 743, 800
Lsp1109I	GCAGC	4 cut(s)	290, 418, 424, 524
LweI	GCATC	4 cut(s)	265, 882, 909, 984
MaeI	CTAG	2 cut(s)	27, 687
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	4 cut(s)	102, 557, 1051, 1135
MalI	GATC	8 cut(s)	56, 81, 443, 606, 618, 642, 840, 845
MboI	GATC	8 cut(s)	54, 79, 441, 604, 616, 640, 838, 843
MboII	GAAGA	2 cut(s)	74, 105
MfeI	CAATTG	2 cut(s)	516, 669
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	1018
MluCI	AATT	9 cut(s)	48, 148, 201, 231, 516, 532, 669, 699, 1086
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	763, 1006
MnlI	CCTC	4 cut(s)	340, 379, 646, 714
MseI	TTAA	2 cut(s)	531, 725
MslI	CAYNNNNRTG	9 cut(s)	474, 545, 585, 591, 612, 618, 636, 642, 917
MspA1I	CMGCKG	2 cut(s)	415, 1058
MspI	CCGG	1 cut(s)	798
MspR9I	CCNGG	1 cut(s)	260
MunI	CAATTG	2 cut(s)	516, 669
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	1058
MwoI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	8 cut(s)	54, 79, 441, 604, 616, 640, 838, 843
NlaIV	GGNNCC	2 cut(s)	18, 802
NmuCI	GTSAC	2 cut(s)	557, 1051
NsbI	TGCGCA	1 cut(s)	664
NspI	RCATGY	5 cut(s)	289, 479, 663, 758, 1010
PaeI	GCATGC	2 cut(s)	479, 663
PagI	TCATGA	3 cut(s)	613, 637, 997
PciI	ACATGT	1 cut(s)	1006
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	4 cut(s)	155, 306, 772, 1061
PflMI	CCANNNNNTGG	1 cut(s)	810
PkrI	GCNGC	4 cut(s)	280, 414, 433, 514
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	1006
Psp1406I	AACGTT	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	18, 802
PsuI	RGATCY	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	3 cut(s)	195, 267, 1143
RsaNI	GTAC	3 cut(s)	194, 266, 1142
RseI	CAYNNNNRTG	9 cut(s)	474, 545, 585, 591, 612, 618, 636, 642, 917
SacII	CCGCGG	1 cut(s)	1059
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	531, 725
SatI	GCNGC	4 cut(s)	279, 413, 432, 513
Sau3AI	GATC	8 cut(s)	54, 79, 441, 604, 616, 640, 838, 843
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	1018
SfaNI	GCATC	4 cut(s)	265, 882, 909, 984
SfcI	CTRYAG	2 cut(s)	956, 1065
Sfr303I	CCGCGG	1 cut(s)	1059
SgrBI	CCGCGG	1 cut(s)	1059
SmiMI	CAYNNNNRTG	9 cut(s)	474, 545, 585, 591, 612, 618, 636, 642, 917
SmlI	CTYRAG	3 cut(s)	383, 968, 1075
SmoI	CTYRAG	3 cut(s)	383, 968, 1075
SphI	GCATGC	2 cut(s)	479, 663
Sse9I	AATT	9 cut(s)	48, 148, 201, 231, 516, 532, 669, 699, 1086
SsiI	CCGC	2 cut(s)	1056, 1058
SspI	AATATT	1 cut(s)	723
SspMI	CTAG	2 cut(s)	27, 687
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	4 cut(s)	1024, 1069, 1141, 1155
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	3 cut(s)	251, 738, 948
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	9 cut(s)	48, 148, 201, 231, 516, 532, 669, 699, 1086
TatI	WGTACW	3 cut(s)	193, 265, 1141
TfiI	GAWTC	4 cut(s)	155, 306, 772, 1061
Tru1I	TTAA	2 cut(s)	531, 725
Tru9I	TTAA	2 cut(s)	531, 725
TseFI	GTSAC	2 cut(s)	557, 1051
TseI	GCWGC	4 cut(s)	278, 412, 431, 512
Tsp45I	GTSAC	2 cut(s)	557, 1051
TspDTI	ATGAA	4 cut(s)	60, 462, 696, 986
TspGWI	ACGGA	1 cut(s)	368
Van91I	CCANNNNNTGG	1 cut(s)	810
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	5 cut(s)	289, 479, 663, 758, 1010
XspI	CTAG	2 cut(s)	27, 687
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.