Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Forward (+)

72403687 .. 72406553

Gene Structure 2867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G041020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGCATGAGAAGGTTCCCTTATCTAGAACAGAGTCCCAGCATGAAATTGAGATCCCGATAGTCTCTGAAATTATTGATCTTCTGCCTGTGCCACAAAAGTTACCTTGCTCTTCCATCTGTGGTTTCTCCAGGAAAGAAAGCAGTAATTTGGATTCAAAACAACGTTCACAATCAGCAACTAAACTTCGTGTACTCATAATTGTCTATATGTTGTTTATGGTTGTTGAAATTGTTGGTGGTGTAAAATCGAACAGCCTGGCAGTACTCACAGATGCAGCCCACATGCTTACTGATGTTAGTGGATTCGCTATTGCTCTTTTTGCAGTAATAGCTTCAGGTTGGGAGGCAACATCATGCCAGTCTTTTGGATATCACCGTCTTGAGGTTTTGAGTGCGCTTCTATCTGTGCTGCTGATATGGGTGGTCGCTGCGATCTTGATCTATGAAGCAGTCAACAGAATGCTTCACAAGCATGCAATGGTCAATGGGGTTCTCATGTTTGCAGTTGCAGCATTTGGATTTTCGGTTAATTTTATCATGGTCATGTGGCTCGGTCACAATCACACTCACCATCATCATCATCATCATCATCATCATCATCATACTTGTGGAGACTTGGATCATGATCATGATCATGGTCATAATCATAATCATGATCATGGCAAGGAGGAAGCATGCGCAACAATTGAAGACGATGAAACTAGCTTGGTGTCAATTCCTCCGGTAAAGACTAAAATATTAAACATAAATCTCGAAGGAGCTTACCTGCATGTTATGGCCGACATGATTCAGTCTGTTGGAGTAATGATTGCCGCAGCCATCATTTGGGCGAAGCCAGATTATTTAGTTGTTGATCTGATCTGCACACTCATCTTTTCTGTTTTTGCTGTAAGCACAACTATACCGATGCTCAGAAATACATATGGCATATTGATGCAGAGAACTCCAAGTGAGATTGATATTGACAAGCTAGAGAAAGGTCTCAAGTGCATCAAAGGAGTTCAGGATGTTCATGACCTACATGTTTGGGCACTAACAGTTGGAAAAATGGTATTGTCGTGTCATGTCACCGCGGATTCTACAGTAGGCTCAAGTCAGATAATTGATGAGATTAGTGATTTTTGTGAAAAAACTTACAGAATACATGATGTTACTGTACAGATTGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

391

Amino Acids

43.51

Weight (kDa)

5.97

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	64 - 313	9e-41	Cation efflux transmembrane domain
ZT_dimer	PF16916	317 - 390	2.6e-14	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	682
Acc36I	ACCTGC	1 cut(s)	777
AccB7I	CCANNNNNTGG	1 cut(s)	828
AccII	CGCG	1 cut(s)	1076
AciI	CCGC	3 cut(s)	816, 1074, 1076
AclI	AACGTT	1 cut(s)	166
AclWI	GGATC	2 cut(s)	49, 630
AcoI	YGGCCR	1 cut(s)	780
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	195, 267, 1161
AfiI	CCNNNNNNNGG	2 cut(s)	385, 828
AflIII	ACRYGT	1 cut(s)	1024
AgsI	TTSAA	4 cut(s)	159, 230, 692, 1169
AjnI	CCWGG	2 cut(s)	131, 258
AluBI	AGCT	4 cut(s)	335, 708, 764, 973
AluI	AGCT	4 cut(s)	335, 708, 764, 973
Alw26I	GTCTC	3 cut(s)	70, 609, 989
AlwI	GGATC	2 cut(s)	49, 630
AoxI	GGCC	1 cut(s)	780
ApeKI	GCWGC	5 cut(s)	278, 412, 431, 512, 818
AspLEI	GCGC	2 cut(s)	400, 683
AsuHPI	GGTGA	3 cut(s)	368, 563, 1063
BaeGI	GKGCMC	1 cut(s)	1036
BbsI	GAAGAC	1 cut(s)	699
BbvI	GCAGC	5 cut(s)	290, 399, 418, 524, 830
BccI	CCATC	3 cut(s)	125, 582, 830
BciT130I	CCWGG	2 cut(s)	133, 260
BclI	TGATCA	3 cut(s)	628, 634, 658
BcoDI	GTCTC	3 cut(s)	70, 609, 989
BfaI	CTAG	3 cut(s)	27, 705, 974
BfmI	CTRYAG	1 cut(s)	1083
BfuAI	ACCTGC	1 cut(s)	777
BisI	GCNGC	6 cut(s)	279, 413, 432, 513, 816, 819
BlsI	GCNGC	6 cut(s)	280, 414, 433, 514, 817, 820
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	2 cut(s)	133, 260
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	133, 260
BmsI	GCATC	4 cut(s)	265, 900, 927, 1002
BpiI	GAAGAC	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	115
BpuEI	CTTGAG	3 cut(s)	404, 971, 1078
BsaBI	GATNNNNATC	3 cut(s)	440, 627, 633
BsaI	GGTCTC	1 cut(s)	989
BsaJI	CCNNGG	1 cut(s)	1074
BsaWI	WCCGGW	1 cut(s)	724
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 828
Bse1I	ACTGG	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	3 cut(s)	440, 627, 633
BseBI	CCWGG	2 cut(s)	133, 260
BseDI	CCNNGG	1 cut(s)	1074
BseGI	GGATG	1 cut(s)	1015
BseJI	GATNNNNATC	3 cut(s)	440, 627, 633
BseLI	CCNNNNNNNGG	2 cut(s)	385, 828
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	928
BseNI	ACTGG	1 cut(s)	361
BseSI	GKGCMC	1 cut(s)	1036
BseXI	GCAGC	5 cut(s)	290, 399, 418, 524, 830
BseYI	CCCAGC	1 cut(s)	39
BsgI	GTGCAG	1 cut(s)	850
Bsh1236I	CGCG	1 cut(s)	1076
BshFI	GGCC	1 cut(s)	782
BsiSI	CCGG	1 cut(s)	725
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	385, 828
BsmAI	GTCTC	3 cut(s)	70, 609, 989
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	782
Bso31I	GGTCTC	1 cut(s)	989
Bsp1286I	GDGCHC	1 cut(s)	1036
Bsp1407I	TGTACA	1 cut(s)	1159
BspACI	CCGC	3 cut(s)	816, 1074, 1076
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	1 cut(s)	927
BspFNI	CGCG	1 cut(s)	1076
BspHI	TCATGA	4 cut(s)	625, 631, 655, 1015
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	777
BspPI	GGATC	2 cut(s)	49, 630
BspQI	GCTCTTC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	989
BsrDI	GCAATG	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	1159
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	1074
Bst2UI	CCWGG	2 cut(s)	133, 260
Bst4CI	ACNGT	5 cut(s)	380, 1042, 1087, 1159, 1173
Bst6I	CTCTTC	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	1159
BstC8I	GCNNGC	2 cut(s)	477, 679
BstDEI	CTNAG	1 cut(s)	914
BstDSI	CCRYGG	1 cut(s)	1074
BstF5I	GGATG	1 cut(s)	1015
BstFNI	CGCG	1 cut(s)	1076
BstHHI	GCGC	2 cut(s)	400, 683
BstMAI	GTCTC	3 cut(s)	70, 609, 989
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
BstNI	CCWGG	2 cut(s)	133, 260
BstNSI	RCATGY	5 cut(s)	289, 479, 681, 776, 1028
BstSCI	CCNGG	2 cut(s)	131, 258
BstSFI	CTRYAG	1 cut(s)	1083
BstSLI	GKGCMC	1 cut(s)	1036
BstUI	CGCG	1 cut(s)	1076
BstV1I	GCAGC	5 cut(s)	290, 399, 418, 524, 830
BstV2I	GAAGAC	1 cut(s)	699
BstX2I	RGATCY	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	782
BtgI	CCRYGG	1 cut(s)	1074
BtsCI	GGATG	1 cut(s)	1015
BveI	ACCTGC	1 cut(s)	777
Cac8I	GCNNGC	2 cut(s)	477, 679
CciI	TCATGA	4 cut(s)	625, 631, 655, 1015
CfoI	GCGC	2 cut(s)	400, 683
Cfr42I	CCGCGG	1 cut(s)	1077
Csp6I	GTAC	3 cut(s)	194, 266, 1160
CviQI	GTAC	3 cut(s)	194, 266, 1160
DdeI	CTNAG	1 cut(s)	914
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	989
Eco32I	GATATC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	2 cut(s)	131, 258
EcoRV	GATATC	1 cut(s)	374
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	925
FbaI	TGATCA	3 cut(s)	628, 634, 658
Fnu4HI	GCNGC	6 cut(s)	279, 413, 432, 513, 816, 819
FokI	GGATG	1 cut(s)	1022
Fsp4HI	GCNGC	6 cut(s)	279, 413, 432, 513, 816, 819
FspBI	CTAG	3 cut(s)	27, 705, 974
FspI	TGCGCA	1 cut(s)	682
GlaI	GCGC	2 cut(s)	399, 682
GluI	GCNGC	6 cut(s)	279, 413, 432, 513, 816, 819
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	115
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	1 cut(s)	725
HhaI	GCGC	2 cut(s)	400, 683
Hin6I	GCGC	2 cut(s)	398, 681
HinP1I	GCGC	2 cut(s)	398, 681
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	5 cut(s)	35, 155, 306, 790, 1079
HpaII	CCGG	1 cut(s)	725
HphI	GGTGA	3 cut(s)	368, 563, 1063
Hpy166II	GTNNAC	3 cut(s)	170, 194, 457
Hpy188I	TCNGA	4 cut(s)	70, 861, 917, 1101
Hpy8I	GTNNAC	3 cut(s)	170, 194, 457
HpyAV	CCTTC	2 cut(s)	7, 752
HpyCH4III	ACNGT	5 cut(s)	380, 1042, 1087, 1159, 1173
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	9 cut(s)	278, 326, 479, 506, 512, 772, 867, 940, 993
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
HpyF3I	CTNAG	1 cut(s)	914
HpySE526I	ACGT	1 cut(s)	166
HspAI	GCGC	2 cut(s)	398, 681
Ksp22I	TGATCA	3 cut(s)	628, 634, 658
KspI	CCGCGG	1 cut(s)	1077
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	4, 761
Lsp1109I	GCAGC	5 cut(s)	290, 399, 418, 524, 830
LweI	GCATC	4 cut(s)	265, 900, 927, 1002
MaeI	CTAG	3 cut(s)	27, 705, 974
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	4 cut(s)	102, 557, 1069, 1153
MboII	GAAGA	3 cut(s)	74, 105, 704
MfeI	CAATTG	1 cut(s)	687
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	1036
MluCI	AATT	9 cut(s)	48, 72, 148, 201, 231, 532, 687, 717, 1104
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	781, 1024
MnlI	CCTC	4 cut(s)	340, 379, 664, 732
MseI	TTAA	2 cut(s)	531, 743
MslI	CAYNNNNRTG	8 cut(s)	474, 545, 609, 630, 636, 654, 660, 935
MspA1I	CMGCKG	1 cut(s)	1076
MspI	CCGG	1 cut(s)	725
MspR9I	CCNGG	2 cut(s)	133, 260
MunI	CAATTG	1 cut(s)	687
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	2 cut(s)	133, 260
MvnI	CGCG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
NdeI	CATATG	1 cut(s)	925
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	2 cut(s)	557, 1069
NsbI	TGCGCA	1 cut(s)	682
NspI	RCATGY	5 cut(s)	289, 479, 681, 776, 1028
PaeI	GCATGC	2 cut(s)	479, 681
PagI	TCATGA	4 cut(s)	625, 631, 655, 1015
PciI	ACATGT	1 cut(s)	1024
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	4 cut(s)	155, 306, 790, 1079
PflMI	CCANNNNNTGG	1 cut(s)	828
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	6 cut(s)	280, 414, 433, 514, 817, 820
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	1024
Psp1406I	AACGTT	1 cut(s)	166
Psp6I	CCWGG	2 cut(s)	131, 258
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	131, 258
PspN4I	GGNNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	3 cut(s)	195, 267, 1161
RsaNI	GTAC	3 cut(s)	194, 266, 1160
RseI	CAYNNNNRTG	8 cut(s)	474, 545, 609, 630, 636, 654, 660, 935
SacII	CCGCGG	1 cut(s)	1077
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	531, 743
SatI	GCNGC	6 cut(s)	279, 413, 432, 513, 816, 819
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	133, 260
SduI	GDGCHC	1 cut(s)	1036
SfaNI	GCATC	4 cut(s)	265, 900, 927, 1002
SfcI	CTRYAG	1 cut(s)	1083
Sfr303I	CCGCGG	1 cut(s)	1077
SgrBI	CCGCGG	1 cut(s)	1077
SmiMI	CAYNNNNRTG	8 cut(s)	474, 545, 609, 630, 636, 654, 660, 935
SmlI	CTYRAG	3 cut(s)	383, 986, 1093
SmoI	CTYRAG	3 cut(s)	383, 986, 1093
SphI	GCATGC	2 cut(s)	479, 681
Sse9I	AATT	9 cut(s)	48, 72, 148, 201, 231, 532, 687, 717, 1104
SsiI	CCGC	3 cut(s)	816, 1074, 1076
SspI	AATATT	1 cut(s)	741
SspMI	CTAG	3 cut(s)	27, 705, 974
StyD4I	CCNGG	2 cut(s)	131, 258
TaaI	ACNGT	5 cut(s)	380, 1042, 1087, 1159, 1173
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	251, 756
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	9 cut(s)	48, 72, 148, 201, 231, 532, 687, 717, 1104
TatI	WGTACW	3 cut(s)	193, 265, 1159
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	4 cut(s)	155, 306, 790, 1079
Tru1I	TTAA	2 cut(s)	531, 743
Tru9I	TTAA	2 cut(s)	531, 743
TseFI	GTSAC	2 cut(s)	557, 1069
TseI	GCWGC	5 cut(s)	278, 412, 431, 512, 818
Tsp45I	GTSAC	2 cut(s)	557, 1069
TspDTI	ATGAA	4 cut(s)	60, 462, 714, 1004
Van91I	CCANNNNNTGG	1 cut(s)	828
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	5 cut(s)	289, 479, 681, 776, 1028
XspI	CTAG	3 cut(s)	27, 705, 974
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.