Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Forward (+)

72967660 .. 72970983

Gene Structure 3324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG455600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGCTGATCTTTCTTGTATGGTTACATAAAGTAATGGATGTTGGTTGTTCATGCAATCTGAACTTCTGGGTCACTCTTTTTTCTTTAGTTCTTGAGACATATTGCATTGCCCTATATATTTTACTCTTTGAGGGGGAAATGTTGTGGCAAAGTTGGATGCTTTTTACTAGTGTATTGATCCTTTGGAATTCCCCAAATTTTGAGTCTTTAGATTCTTGGAGAAGCAAGATGGAGCATGAGAAGGTTCCCTTATCTAGAACAGAGTCCCAGCATGAAATTGAGATCCCGATAGTCTCTGAAATTATTGATCTTCTGCCTGTGCCACAAAAGTTACCTTGCTCTTCCATCTGTGGTTTCTCCAAGAAAGAAAGCAGTAATTTGGATTCAAAACAACGTTCACAATCAGCAACTAAACTTCGTGTACTCATAATTGTCTATATGTTGTTTATGGTTGTTGAAATTGTTGGTGGTGTAAAATCGAACAGCCTGGCAGTACTCACAGATGCAGCCCACATGCTGACTGATGTTAGTGGATTCGCTATTGCTCTTTTTGCAGTAATAGCTTCAGGTTGGGAGGCAACATCATACCAGTCTTTTGGATATCACCGTCTTGAGGTTTTGAGTGCGCTTCTATCTGTGCTGCTGATATGGGTGGTCGCTGCGATCTTGATCTATGAAGCAGTCGACAGAATGCTTCACAAGCATGCAATGGTCAATGGGGTTCTCATGTTTGCAGTTGCAGCATTTGGATTTTCGGTTAATTTTATCATGGTCATGTGGCTCGGTCACAATCACACTCACCATCATCATCATCATCATCATGCTTGTGGAGACTTGGATCATGATCATGATCATGGTCATAATCATGATCATGATCATGATCATGGTCATAATCATGATCATGATCATGGCAAGGAGGAAGCATGCGCAACAATTGAAGACGATGAAACTAGCTTGGTGTCAATTCCTCCAGTAAAGACTAAAATATTAAACATAAATCTCGAAGGAGCTTACCTGCATGTTATGGCCGACATGATTCAGTCTGTTGGAGTAATGATTGCCGCAGCCATCATTTGGGCAAAGCCAGATTATTTAGTTGTTGATCTGATCTGCACACTCATCTTTTCTGTTTTTGCTGTAAGCACAACTATACCGATGCTCAGAAATACATATGGCATATTGATGCAGAGAACTCCAAGTGAGATTGATATTGACAAGCTAGAGAAAGGTCTCAAGTGCATCAAAGGAGTTCAGGATGTTCATGACCTACATGTTTGGGCACTAACAGTTGGAAAAATGGTATTGTCGTGTCATGTCACCGCGGATTCTACAGTAGTCTCAAGTCAGATAATTGATGAGATTAGTGATTTTTGTGAAAAAACTTACAGAATACATGATGTTACTATACAGATTGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

473

Amino Acids

53.3

Weight (kDa)

5.66

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	140 - 395	3.5e-40	Cation efflux transmembrane domain
ZT_dimer	PF16916	399 - 472	1.9e-14	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	928
Acc36I	ACCTGC	1 cut(s)	1023
AccB7I	CCANNNNNTGG	1 cut(s)	1074
AccI	GTMKAC	1 cut(s)	684
AccII	CGCG	1 cut(s)	1322
AciI	CCGC	3 cut(s)	1062, 1320, 1322
AclI	AACGTT	1 cut(s)	394
AclWI	GGATC	3 cut(s)	172, 277, 846
AcoI	YGGCCR	1 cut(s)	1026
AcsI	RAATTY	2 cut(s)	187, 196
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	2 cut(s)	423, 495
AfiI	CCNNNNNNNGG	2 cut(s)	613, 1074
AflIII	ACRYGT	1 cut(s)	1270
AgsI	TTSAA	4 cut(s)	387, 458, 938, 1415
AhlI	ACTAGT	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	4 cut(s)	563, 954, 1010, 1219
AluI	AGCT	4 cut(s)	563, 954, 1010, 1219
Alw26I	GTCTC	5 cut(s)	89, 298, 825, 1235, 1342
AlwI	GGATC	3 cut(s)	172, 277, 846
AoxI	GGCC	1 cut(s)	1026
ApeKI	GCWGC	5 cut(s)	506, 640, 659, 740, 1064
ApoI	RAATTY	2 cut(s)	187, 196
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspLEI	GCGC	2 cut(s)	628, 929
AsuHPI	GGTGA	3 cut(s)	596, 791, 1309
BaeGI	GKGCMC	1 cut(s)	1282
BbsI	GAAGAC	1 cut(s)	945
BbvI	GCAGC	5 cut(s)	518, 627, 646, 752, 1076
BccI	CCATC	4 cut(s)	223, 353, 810, 1076
BciT130I	CCWGG	1 cut(s)	488
BclI	TGATCA	7 cut(s)	844, 850, 868, 874, 880, 898, 904
BcoDI	GTCTC	5 cut(s)	89, 298, 825, 1235, 1342
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	4 cut(s)	168, 255, 951, 1220
BfmI	CTRYAG	1 cut(s)	1329
BfuAI	ACCTGC	1 cut(s)	1023
BisI	GCNGC	6 cut(s)	507, 641, 660, 741, 1062, 1065
BlsI	GCNGC	6 cut(s)	508, 642, 661, 742, 1063, 1066
BmcAI	AGTACT	1 cut(s)	495
Bme1390I	CCNGG	1 cut(s)	488
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	488
BmsI	GCATC	5 cut(s)	147, 493, 1146, 1173, 1248
BpiI	GAAGAC	1 cut(s)	945
BpmI	CTGGAG	1 cut(s)	954
BpuEI	CTTGAG	4 cut(s)	113, 632, 1217, 1324
BsaBI	GATNNNNATC	6 cut(s)	668, 843, 849, 873, 879, 903
BsaI	GGTCTC	1 cut(s)	1235
BsaJI	CCNNGG	1 cut(s)	1320
Bsc4I	CCNNNNNNNGG	2 cut(s)	613, 1074
Bse1I	ACTGG	2 cut(s)	589, 971
Bse3DI	GCAATG	2 cut(s)	105, 714
Bse8I	GATNNNNATC	6 cut(s)	668, 843, 849, 873, 879, 903
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	1 cut(s)	1320
BseGI	GGATG	3 cut(s)	43, 162, 1261
BseJI	GATNNNNATC	6 cut(s)	668, 843, 849, 873, 879, 903
BseLI	CCNNNNNNNGG	2 cut(s)	613, 1074
BseMI	GCAATG	2 cut(s)	105, 714
BseMII	CTCAG	1 cut(s)	1174
BseNI	ACTGG	2 cut(s)	589, 971
BseSI	GKGCMC	1 cut(s)	1282
BseXI	GCAGC	5 cut(s)	518, 627, 646, 752, 1076
BseYI	CCCAGC	1 cut(s)	267
BsgI	GTGCAG	1 cut(s)	1096
Bsh1236I	CGCG	1 cut(s)	1322
BshFI	GGCC	1 cut(s)	1028
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	613, 1074
BsmAI	GTCTC	5 cut(s)	89, 298, 825, 1235, 1342
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	1 cut(s)	1028
Bso31I	GGTCTC	1 cut(s)	1235
Bsp1286I	GDGCHC	1 cut(s)	1282
BspACI	CCGC	3 cut(s)	1062, 1320, 1322
BspANI	GGCC	1 cut(s)	1028
BspCNI	CTCAG	1 cut(s)	1173
BspFNI	CGCG	1 cut(s)	1322
BspHI	TCATGA	8 cut(s)	841, 847, 865, 871, 877, 895, 901, 1261
BspLI	GGNNCC	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	1023
BspPI	GGATC	3 cut(s)	172, 277, 846
BspQI	GCTCTTC	1 cut(s)	346
BspTNI	GGTCTC	1 cut(s)	1235
BsrDI	GCAATG	2 cut(s)	105, 714
BsrI	ACTGG	2 cut(s)	589, 971
BssECI	CCNNGG	1 cut(s)	1320
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	4 cut(s)	608, 1288, 1333, 1419
Bst6I	CTCTTC	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	705, 925
BstDEI	CTNAG	1 cut(s)	1160
BstDSI	CCRYGG	1 cut(s)	1320
BstF5I	GGATG	3 cut(s)	43, 162, 1261
BstFNI	CGCG	1 cut(s)	1322
BstHHI	GCGC	2 cut(s)	628, 929
BstMAI	GTCTC	5 cut(s)	89, 298, 825, 1235, 1342
BstMWI	GCNNNNNNNGC	4 cut(s)	551, 560, 700, 740
BstNI	CCWGG	1 cut(s)	488
BstNSI	RCATGY	5 cut(s)	517, 707, 927, 1022, 1274
BstSCI	CCNGG	1 cut(s)	486
BstSFI	CTRYAG	1 cut(s)	1329
BstSLI	GKGCMC	1 cut(s)	1282
BstUI	CGCG	1 cut(s)	1322
BstV1I	GCAGC	5 cut(s)	518, 627, 646, 752, 1076
BstV2I	GAAGAC	1 cut(s)	945
BstX2I	RGATCY	1 cut(s)	282
BstXI	CCANNNNNNTGG	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	1028
BtgI	CCRYGG	1 cut(s)	1320
BtsCI	GGATG	3 cut(s)	43, 162, 1261
BveI	ACCTGC	1 cut(s)	1023
Cac8I	GCNNGC	2 cut(s)	705, 925
CciI	TCATGA	8 cut(s)	841, 847, 865, 871, 877, 895, 901, 1261
CfoI	GCGC	2 cut(s)	628, 929
Cfr42I	CCGCGG	1 cut(s)	1323
Csp6I	GTAC	2 cut(s)	422, 494
CviQI	GTAC	2 cut(s)	422, 494
DdeI	CTNAG	1 cut(s)	1160
EaeI	YGGCCR	1 cut(s)	1026
Eam1104I	CTCTTC	1 cut(s)	346
EarI	CTCTTC	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	1235
Eco32I	GATATC	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	549
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	486
EcoRV	GATATC	1 cut(s)	602
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	1 cut(s)	250
FauNDI	CATATG	1 cut(s)	1171
FbaI	TGATCA	7 cut(s)	844, 850, 868, 874, 880, 898, 904
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	6 cut(s)	507, 641, 660, 741, 1062, 1065
FokI	GGATG	3 cut(s)	50, 169, 1268
Fsp4HI	GCNGC	6 cut(s)	507, 641, 660, 741, 1062, 1065
FspBI	CTAG	4 cut(s)	168, 255, 951, 1220
FspI	TGCGCA	1 cut(s)	928
GlaI	GCGC	2 cut(s)	627, 928
GluI	GCNGC	6 cut(s)	507, 641, 660, 741, 1062, 1065
GsaI	CCCAGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	954
HaeIII	GGCC	1 cut(s)	1028
HhaI	GCGC	2 cut(s)	628, 929
Hin6I	GCGC	2 cut(s)	626, 927
HinP1I	GCGC	2 cut(s)	626, 927
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HinfI	GANTC	7 cut(s)	203, 212, 263, 383, 534, 1036, 1325
HphI	GGTGA	3 cut(s)	596, 791, 1309
Hpy166II	GTNNAC	3 cut(s)	398, 422, 685
Hpy188I	TCNGA	5 cut(s)	60, 298, 1107, 1163, 1347
Hpy8I	GTNNAC	3 cut(s)	398, 422, 685
HpyAV	CCTTC	2 cut(s)	235, 998
HpyCH4III	ACNGT	4 cut(s)	608, 1288, 1333, 1419
HpyCH4IV	ACGT	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	4 cut(s)	551, 560, 700, 740
HpyF3I	CTNAG	1 cut(s)	1160
HpySE526I	ACGT	1 cut(s)	394
HspAI	GCGC	2 cut(s)	626, 927
Ksp22I	TGATCA	7 cut(s)	844, 850, 868, 874, 880, 898, 904
KspI	CCGCGG	1 cut(s)	1323
LguI	GCTCTTC	1 cut(s)	346
LmnI	GCTCC	2 cut(s)	232, 1007
Lsp1109I	GCAGC	5 cut(s)	518, 627, 646, 752, 1076
LweI	GCATC	5 cut(s)	147, 493, 1146, 1173, 1248
MaeI	CTAG	4 cut(s)	168, 255, 951, 1220
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	6 cut(s)	21, 70, 330, 785, 1315, 1399
MboII	GAAGA	3 cut(s)	302, 333, 950
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	1282
MlyI	GAGTC	2 cut(s)	212, 272
MmeI	TCCRAC	3 cut(s)	134, 1027, 1270
MnlI	CCTC	5 cut(s)	124, 568, 607, 910, 978
MseI	TTAA	2 cut(s)	759, 989
MspA1I	CMGCKG	1 cut(s)	1322
MspR9I	CCNGG	1 cut(s)	488
MunI	CAATTG	1 cut(s)	933
Mva1269I	GAATGC	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	488
MvnI	CGCG	1 cut(s)	1322
MwoI	GCNNNNNNNGC	4 cut(s)	551, 560, 700, 740
NdeI	CATATG	1 cut(s)	1171
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	3 cut(s)	70, 785, 1315
NsbI	TGCGCA	1 cut(s)	928
NspI	RCATGY	5 cut(s)	517, 707, 927, 1022, 1274
PaeI	GCATGC	2 cut(s)	707, 927
PagI	TCATGA	8 cut(s)	841, 847, 865, 871, 877, 895, 901, 1261
PciI	ACATGT	1 cut(s)	1270
PciSI	GCTCTTC	1 cut(s)	346
PctI	GAATGC	1 cut(s)	696
PfeI	GAWTC	5 cut(s)	212, 383, 534, 1036, 1325
PflMI	CCANNNNNTGG	1 cut(s)	1074
PkrI	GCNGC	6 cut(s)	508, 642, 661, 742, 1063, 1066
PleI	GAGTC	2 cut(s)	211, 271
PpsI	GAGTC	2 cut(s)	211, 271
PscI	ACATGT	1 cut(s)	1270
Psp1406I	AACGTT	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	486
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	282
RsaI	GTAC	2 cut(s)	423, 495
RsaNI	GTAC	2 cut(s)	422, 494
SacII	CCGCGG	1 cut(s)	1323
SalI	GTCGAC	1 cut(s)	683
SapI	GCTCTTC	1 cut(s)	346
SaqAI	TTAA	2 cut(s)	759, 989
SatI	GCNGC	6 cut(s)	507, 641, 660, 741, 1062, 1065
ScaI	AGTACT	1 cut(s)	495
SchI	GAGTC	2 cut(s)	212, 272
ScrFI	CCNGG	1 cut(s)	488
SduI	GDGCHC	1 cut(s)	1282
SfaNI	GCATC	5 cut(s)	147, 493, 1146, 1173, 1248
SfcI	CTRYAG	1 cut(s)	1329
Sfr303I	CCGCGG	1 cut(s)	1323
SgrBI	CCGCGG	1 cut(s)	1323
SmlI	CTYRAG	4 cut(s)	92, 611, 1232, 1339
SmoI	CTYRAG	4 cut(s)	92, 611, 1232, 1339
SpeI	ACTAGT	1 cut(s)	167
SphI	GCATGC	2 cut(s)	707, 927
SsiI	CCGC	3 cut(s)	1062, 1320, 1322
SspI	AATATT	1 cut(s)	987
SspMI	CTAG	4 cut(s)	168, 255, 951, 1220
StyD4I	CCNGG	1 cut(s)	486
TaaI	ACNGT	4 cut(s)	608, 1288, 1333, 1419
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	3 cut(s)	479, 684, 1002
TaqII	GACCGA	1 cut(s)	773
TatI	WGTACW	2 cut(s)	421, 493
TauI	GCSGC	1 cut(s)	1064
TfiI	GAWTC	5 cut(s)	212, 383, 534, 1036, 1325
Tru1I	TTAA	2 cut(s)	759, 989
Tru9I	TTAA	2 cut(s)	759, 989
TseFI	GTSAC	3 cut(s)	70, 785, 1315
TseI	GCWGC	5 cut(s)	506, 640, 659, 740, 1064
Tsp45I	GTSAC	3 cut(s)	70, 785, 1315
TspDTI	ATGAA	5 cut(s)	39, 288, 690, 960, 1250
Van91I	CCANNNNNTGG	1 cut(s)	1074
XapI	RAATTY	2 cut(s)	187, 196
XbaI	TCTAGA	1 cut(s)	254
XceI	RCATGY	5 cut(s)	517, 707, 927, 1022, 1274
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	4 cut(s)	168, 255, 951, 1220
ZrmI	AGTACT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.