Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Reverse (-)

17567252 .. 17569854

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00014260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAGCATGAGAAGGTTCCCTTATCTAGAACAGAGTCCCAGCATGAAATTGAGATCCCGATAGTCTCTGAAAGTATTGATCTTCTGCCTGTGCCACAAAAGTTACCTTGCTCTTCCATCTGTGGTTTCTCCAAGAAAGAAAGCAGTAATTTGGATTCAAAACAACGTTCACAATCAGCAACTAAGCTTCGTGTACTCATAATTGTCTATATGTTGTTTATGGTTGTTGAAATTATTGGTGGTGTAAAATCGAACAGCCTGGCAGTACTCACAGATGCAGCCCACATGCTTACTGATGTTAGTGGATTCGCTATTGCTCTTTTTGCAGTAATAGCTTCAGGTTGGGAGGCAACATCATACCAGTCTTTTGGATATCACCGTCTTGAGGTTTTGAGTGCGCTTCTATCTGTGCAGCTGATATGGGTGGTCGCTGCGATCTTGATCTATGAAGCAGTCAACAGAATGCTTCACAAGCATGCAATGGTCAATGGGGTTCTCATGTTTGCAGTTGCAGCATTTGGATTTTCGGTTAATTTTATCATGGTCATGTGGCTCGGCCACAATCACACTCATCATCAGCATCATCATCATGCTTGTGGAGACTTGGATCATCATCATGATCATGGTCATAATCATAATCATGATCATGGCAAGGAGGAAGCATGCGCAACAATTGAAGACGATGAAACTAGCTTGGTGTCAATTCCTCCAGTAAAGACTAAAATATTAAACATAAATCTCGAAGGAGCTTACCTGCATGTTATGGCCGACATGATTCAGTCTGTTGGAGTAATGATTGCCGCAGCCATCATTTGGGCGAAGCCAGATTATTTAGTTGTTGATCTGATCTGCACACTCATCTTTTCTGTTTTTGCTGTAAGCACAACTATACCGATGCTCAGAAATACTTATGGCATATTGATGCAGAGAACACCAAGTGAGATTGATATCGACAAGCTAGAGAAAGGTCTCAAGTGCATCAAAGGAGTTCAGGATGTTCATGACCTACATGTTTGGGCACTAACAGTTGGAAAAATGGTATTGTCGTGCCATGTTACCGCGGATTCTACAGTAGGCTCAAGTCAGATAATTGATGAGATTAGTGATTTTTGTGAAAAAACTTACAGAATACATGATGTTACTGTACAGATTGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

386

Amino Acids

42.85

Weight (kDa)

5.88

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	64 - 308	5.6e-39	Cation efflux transmembrane domain
ZT_dimer	PF16916	312 - 385	2.6e-14	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	667
Acc36I	ACCTGC	1 cut(s)	762
AccB7I	CCANNNNNTGG	1 cut(s)	813
AccII	CGCG	1 cut(s)	1061
AciI	CCGC	3 cut(s)	801, 1059, 1061
AclI	AACGTT	1 cut(s)	166
AclWI	GGATC	2 cut(s)	49, 615
AcoI	YGGCCR	2 cut(s)	556, 765
AcuI	CTGAAG	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	938
AfaI	GTAC	3 cut(s)	195, 267, 1146
AfiI	CCNNNNNNNGG	2 cut(s)	385, 813
AflIII	ACRYGT	1 cut(s)	1009
AgsI	TTSAA	4 cut(s)	159, 230, 677, 1154
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	6 cut(s)	187, 335, 415, 693, 749, 958
AluI	AGCT	6 cut(s)	187, 335, 415, 693, 749, 958
Alw26I	GTCTC	3 cut(s)	70, 594, 974
AlwI	GGATC	2 cut(s)	49, 615
AoxI	GGCC	2 cut(s)	556, 765
ApeKI	GCWGC	5 cut(s)	278, 412, 431, 512, 803
AspLEI	GCGC	2 cut(s)	400, 668
AsuHPI	GGTGA	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	1021
BbsI	GAAGAC	1 cut(s)	684
BbvI	GCAGC	5 cut(s)	290, 418, 424, 524, 815
BccI	CCATC	2 cut(s)	125, 815
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	2 cut(s)	619, 643
BcoDI	GTCTC	3 cut(s)	70, 594, 974
BfaI	CTAG	3 cut(s)	27, 690, 959
BfmI	CTRYAG	1 cut(s)	1068
BfuAI	ACCTGC	1 cut(s)	762
BisI	GCNGC	6 cut(s)	279, 413, 432, 513, 801, 804
BlsI	GCNGC	6 cut(s)	280, 414, 433, 514, 802, 805
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	5 cut(s)	265, 589, 885, 912, 987
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	1 cut(s)	693
BpuEI	CTTGAG	3 cut(s)	404, 956, 1063
BsaBI	GATNNNNATC	3 cut(s)	440, 612, 947
BsaI	GGTCTC	1 cut(s)	974
BsaJI	CCNNGG	1 cut(s)	1059
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 813
Bse1I	ACTGG	2 cut(s)	361, 710
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	3 cut(s)	440, 612, 947
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	1059
BseGI	GGATG	1 cut(s)	1000
BseJI	GATNNNNATC	3 cut(s)	440, 612, 947
BseLI	CCNNNNNNNGG	2 cut(s)	385, 813
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	913
BseNI	ACTGG	2 cut(s)	361, 710
BseSI	GKGCMC	1 cut(s)	1021
BseXI	GCAGC	5 cut(s)	290, 418, 424, 524, 815
BseYI	CCCAGC	1 cut(s)	39
BsgI	GTGCAG	2 cut(s)	431, 835
Bsh1236I	CGCG	1 cut(s)	1061
BshFI	GGCC	2 cut(s)	558, 767
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	385, 813
BsmAI	GTCTC	3 cut(s)	70, 594, 974
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	2 cut(s)	558, 767
Bso31I	GGTCTC	1 cut(s)	974
Bsp1286I	GDGCHC	1 cut(s)	1021
Bsp1407I	TGTACA	1 cut(s)	1144
Bsp143I	GATC	9 cut(s)	54, 79, 435, 441, 607, 619, 643, 841, 846
BspACI	CCGC	3 cut(s)	801, 1059, 1061
BspANI	GGCC	2 cut(s)	558, 767
BspCNI	CTCAG	1 cut(s)	912
BspFNI	CGCG	1 cut(s)	1061
BspHI	TCATGA	3 cut(s)	616, 640, 1000
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	762
BspPI	GGATC	2 cut(s)	49, 615
BspQI	GCTCTTC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	1144
BsrI	ACTGG	2 cut(s)	361, 710
BssECI	CCNNGG	1 cut(s)	1059
BssMI	GATC	9 cut(s)	54, 79, 435, 441, 607, 619, 643, 841, 846
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	5 cut(s)	380, 1027, 1072, 1144, 1158
Bst6I	CTCTTC	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	1144
BstC8I	GCNNGC	2 cut(s)	477, 664
BstDEI	CTNAG	2 cut(s)	183, 899
BstDSI	CCRYGG	1 cut(s)	1059
BstF5I	GGATG	1 cut(s)	1000
BstFNI	CGCG	1 cut(s)	1061
BstHHI	GCGC	2 cut(s)	400, 668
BstKTI	GATC	9 cut(s)	57, 82, 438, 444, 610, 622, 646, 844, 849
BstMAI	GTCTC	3 cut(s)	70, 594, 974
BstMBI	GATC	9 cut(s)	54, 79, 435, 441, 607, 619, 643, 841, 846
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	5 cut(s)	289, 479, 666, 761, 1013
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	1068
BstSLI	GKGCMC	1 cut(s)	1021
BstUI	CGCG	1 cut(s)	1061
BstV1I	GCAGC	5 cut(s)	290, 418, 424, 524, 815
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	558, 767
BtgI	CCRYGG	1 cut(s)	1059
BtsCI	GGATG	1 cut(s)	1000
BveI	ACCTGC	1 cut(s)	762
Cac8I	GCNNGC	2 cut(s)	477, 664
CciI	TCATGA	3 cut(s)	616, 640, 1000
CfoI	GCGC	2 cut(s)	400, 668
Cfr42I	CCGCGG	1 cut(s)	1062
Csp6I	GTAC	3 cut(s)	194, 266, 1145
CviQI	GTAC	3 cut(s)	194, 266, 1145
DdeI	CTNAG	2 cut(s)	183, 899
DpnI	GATC	9 cut(s)	56, 81, 437, 443, 609, 621, 645, 843, 848
DpnII	GATC	9 cut(s)	54, 79, 435, 441, 607, 619, 643, 841, 846
DraIII	CACNNNGTG	1 cut(s)	938
EaeI	YGGCCR	2 cut(s)	556, 765
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	974
Eco32I	GATATC	2 cut(s)	374, 949
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	2 cut(s)	374, 949
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	22
FbaI	TGATCA	2 cut(s)	619, 643
Fnu4HI	GCNGC	6 cut(s)	279, 413, 432, 513, 801, 804
FokI	GGATG	1 cut(s)	1007
Fsp4HI	GCNGC	6 cut(s)	279, 413, 432, 513, 801, 804
FspBI	CTAG	3 cut(s)	27, 690, 959
FspI	TGCGCA	1 cut(s)	667
GlaI	GCGC	2 cut(s)	399, 667
GluI	GCNGC	6 cut(s)	279, 413, 432, 513, 801, 804
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	2 cut(s)	558, 767
HhaI	GCGC	2 cut(s)	400, 668
Hin6I	GCGC	2 cut(s)	398, 666
HinP1I	GCGC	2 cut(s)	398, 666
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	5 cut(s)	35, 155, 306, 775, 1064
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	3 cut(s)	170, 194, 457
Hpy188I	TCNGA	4 cut(s)	70, 846, 902, 1086
Hpy188III	TCNNGA	9 cut(s)	27, 58, 383, 439, 617, 641, 740, 992, 1001
Hpy8I	GTNNAC	3 cut(s)	170, 194, 457
HpyAV	CCTTC	2 cut(s)	7, 737
HpyCH4III	ACNGT	5 cut(s)	380, 1027, 1072, 1144, 1158
HpyCH4IV	ACGT	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
HpyF3I	CTNAG	2 cut(s)	183, 899
HpySE526I	ACGT	1 cut(s)	166
HspAI	GCGC	2 cut(s)	398, 666
Ksp22I	TGATCA	2 cut(s)	619, 643
KspI	CCGCGG	1 cut(s)	1062
Kzo9I	GATC	9 cut(s)	54, 79, 435, 441, 607, 619, 643, 841, 846
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	4, 746
Lsp1109I	GCAGC	5 cut(s)	290, 418, 424, 524, 815
LweI	GCATC	5 cut(s)	265, 589, 885, 912, 987
MaeI	CTAG	3 cut(s)	27, 690, 959
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	3 cut(s)	102, 1054, 1138
MalI	GATC	9 cut(s)	56, 81, 437, 443, 609, 621, 645, 843, 848
MboI	GATC	9 cut(s)	54, 79, 435, 441, 607, 619, 643, 841, 846
MboII	GAAGA	3 cut(s)	74, 105, 689
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	1021
MluCI	AATT	8 cut(s)	48, 148, 201, 231, 532, 672, 702, 1089
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	766, 1009
MnlI	CCTC	4 cut(s)	340, 379, 649, 717
MseI	TTAA	2 cut(s)	531, 728
MslI	CAYNNNNRTG	9 cut(s)	474, 545, 588, 594, 615, 621, 639, 645, 920
MspA1I	CMGCKG	2 cut(s)	415, 1061
MspR9I	CCNGG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	1061
MwoI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
NdeII	GATC	9 cut(s)	54, 79, 435, 441, 607, 619, 643, 841, 846
NlaIV	GGNNCC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	534
NsbI	TGCGCA	1 cut(s)	667
NspI	RCATGY	5 cut(s)	289, 479, 666, 761, 1013
PaeI	GCATGC	2 cut(s)	479, 666
PagI	TCATGA	3 cut(s)	616, 640, 1000
PciI	ACATGT	1 cut(s)	1009
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	4 cut(s)	155, 306, 775, 1064
PflMI	CCANNNNNTGG	1 cut(s)	813
PkrI	GCNGC	6 cut(s)	280, 414, 433, 514, 802, 805
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	1009
Psp1406I	AACGTT	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	3 cut(s)	195, 267, 1146
RsaNI	GTAC	3 cut(s)	194, 266, 1145
RseI	CAYNNNNRTG	9 cut(s)	474, 545, 588, 594, 615, 621, 639, 645, 920
SacII	CCGCGG	1 cut(s)	1062
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	531, 728
SatI	GCNGC	6 cut(s)	279, 413, 432, 513, 801, 804
Sau3AI	GATC	9 cut(s)	54, 79, 435, 441, 607, 619, 643, 841, 846
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	1021
SfaNI	GCATC	5 cut(s)	265, 589, 885, 912, 987
SfcI	CTRYAG	1 cut(s)	1068
Sfr303I	CCGCGG	1 cut(s)	1062
SgrBI	CCGCGG	1 cut(s)	1062
SmiMI	CAYNNNNRTG	9 cut(s)	474, 545, 588, 594, 615, 621, 639, 645, 920
SmlI	CTYRAG	3 cut(s)	383, 971, 1078
SmoI	CTYRAG	3 cut(s)	383, 971, 1078
SphI	GCATGC	2 cut(s)	479, 666
Sse9I	AATT	8 cut(s)	48, 148, 201, 231, 532, 672, 702, 1089
SsiI	CCGC	3 cut(s)	801, 1059, 1061
SspI	AATATT	1 cut(s)	726
SspMI	CTAG	3 cut(s)	27, 690, 959
StyD4I	CCNGG	1 cut(s)	258
TaaI	ACNGT	5 cut(s)	380, 1027, 1072, 1144, 1158
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	3 cut(s)	251, 741, 951
TasI	AATT	8 cut(s)	48, 148, 201, 231, 532, 672, 702, 1089
TatI	WGTACW	3 cut(s)	193, 265, 1144
TauI	GCSGC	1 cut(s)	803
TfiI	GAWTC	4 cut(s)	155, 306, 775, 1064
Tru1I	TTAA	2 cut(s)	531, 728
Tru9I	TTAA	2 cut(s)	531, 728
TseI	GCWGC	5 cut(s)	278, 412, 431, 512, 803
TspDTI	ATGAA	4 cut(s)	60, 462, 699, 989
Van91I	CCANNNNNTGG	1 cut(s)	813
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	5 cut(s)	289, 479, 666, 761, 1013
XspI	CTAG	3 cut(s)	27, 690, 959
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.