Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Reverse (-)

5227924 .. 5228619

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTTTTCAGTTGCCGCATTTGGGTTTCTTGTCAACTTAATCATGGTCGTGTGGCTTGGTCACGACCACACCCATCATGCATGTGGAGGCTTAGGTCACGATCATCATCATGATCATCATCAAGTTCATACTCACGATCATCATCATGGCCATAATCACGATCATCATCATGGTCATGATTATCAGGAGGAAGAAAGTGCAATAATGGAGGACGATAAAACGAGTCTGGTGTCATCCACTTCTCCAGAAAAGACTAAAATATTAAACATAAATATCCAAGGAGCTTACTTGCATGTCATCGCCGATATGATTCAGTCCGTTGGGGTGATGGTCGCTGGAGGCATCATATGGGCAAGGCCAGATTGGTTAGTAGTTGATCTCATCTGCACACTCATATTTTCTGTTTTTGCTGTTAGCACAACTATATCGATGCTTAAAAATATATATGGCATATTGATGGAGAGAACGCCAAGCGAGATTGATATCGCCGGGCTAGAAAAAGGCATCAAGTGCATCAAAGGAGTTCGGGATGTTCACGACCTACACGTTTGGGCGCTAACGGTTGGAAAAACTGTGTTGTCTTGCCATGTAACGTCCGAGCCTGCCGTAAGCTCTAGTCAGATAATTGACAAGATTAGGGATTACTGTGAAAGTACTTACAGAATACATCATGTAACTATACAGATTGAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

232

Amino Acids

25.87

Weight (kDa)

6.03

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	3 - 153	1.3e-09	Cation efflux transmembrane domain
ZT_dimer	PF16916	157 - 230	4.4e-14	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	148
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	1 cut(s)	21
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	1 cut(s)	689
AluBI	AGCT	2 cut(s)	284, 612
AluI	AGCT	2 cut(s)	284, 612
AoxI	GGCC	2 cut(s)	148, 356
AspLEI	GCGC	1 cut(s)	556
AsuC2I	CCSGG	1 cut(s)	490
AsuHPI	GGTGA	1 cut(s)	337
BalI	TGGCCA	1 cut(s)	150
BccI	CCATC	3 cut(s)	81, 322, 451
BceAI	ACGGC	1 cut(s)	590
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	490
BfaI	CTAG	2 cut(s)	494, 615
BfoI	RGCGCY	1 cut(s)	557
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	655
Bme1390I	CCNGG	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	490
BmsI	GCATC	4 cut(s)	351, 420, 513, 522
BpmI	CTGGAG	2 cut(s)	228, 357
Bpu10I	CCTNAGC	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	490
Bsa29I	ATCGAT	1 cut(s)	428
BsaBI	GATNNNNATC	5 cut(s)	105, 117, 141, 165, 482
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse8I	GATNNNNATC	5 cut(s)	105, 117, 141, 165, 482
BseCI	ATCGAT	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	2 cut(s)	233, 535
BseJI	GATNNNNATC	5 cut(s)	105, 117, 141, 165, 482
BseLI	CCNNNNNNNGG	1 cut(s)	21
BsgI	GTGCAG	1 cut(s)	370
BshFI	GGCC	2 cut(s)	150, 358
BshVI	ATCGAT	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	21
BsnI	GGCC	2 cut(s)	150, 358
Bsp143I	GATC	5 cut(s)	100, 112, 136, 160, 376
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	2 cut(s)	150, 358
BspDI	ATCGAT	1 cut(s)	428
BspHI	TCATGA	2 cut(s)	109, 175
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	5 cut(s)	100, 112, 136, 160, 376
BssT1I	CCWWGG	1 cut(s)	277
Bst4CI	ACNGT	4 cut(s)	562, 574, 647, 693
BstAPI	GCANNNNNTGC	1 cut(s)	510
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	233, 535
BstH2I	RGCGCY	1 cut(s)	557
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	5 cut(s)	103, 115, 139, 163, 379
BstMBI	GATC	5 cut(s)	100, 112, 136, 160, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	510
BstNSI	RCATGY	2 cut(s)	84, 296
BstSCI	CCNGG	1 cut(s)	488
Bsu15I	ATCGAT	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	150, 358
BsuTUI	ATCGAT	1 cut(s)	428
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	233, 535
Cac8I	GCNNGC	1 cut(s)	603
CciI	TCATGA	2 cut(s)	109, 175
CfoI	GCGC	1 cut(s)	556
ClaI	ATCGAT	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	654
CviJI	RGCY	8 cut(s)	55, 90, 150, 284, 358, 493, 601, 612
CviKI_1	RGCY	8 cut(s)	55, 90, 150, 284, 358, 493, 601, 612
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	5 cut(s)	102, 114, 138, 162, 378
DpnII	GATC	5 cut(s)	100, 112, 136, 160, 376
EaeI	YGGCCR	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	277
Eco32I	GATATC	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	277
FauNDI	CATATG	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	220, 542
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	2 cut(s)	494, 615
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	2 cut(s)	228, 357
HaeII	RGCGCY	1 cut(s)	557
HaeIII	GGCC	2 cut(s)	150, 358
HapII	CCGG	1 cut(s)	489
HhaI	GCGC	1 cut(s)	556
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	223, 310
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	34, 535
Hpy188I	TCNGA	2 cut(s)	598, 621
Hpy8I	GTNNAC	2 cut(s)	34, 535
HpyCH4III	ACNGT	4 cut(s)	562, 574, 647, 693
HpyCH4IV	ACGT	2 cut(s)	546, 593
HpyCH4V	TGCA	5 cut(s)	80, 200, 292, 387, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	510
HpyF3I	CTNAG	1 cut(s)	91
HpySE526I	ACGT	2 cut(s)	546, 593
HspAI	GCGC	1 cut(s)	554
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	100, 112, 136, 160, 376
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	7 cut(s)	170, 212, 258, 321, 372, 502, 615
LweI	GCATC	4 cut(s)	351, 420, 513, 522
MaeI	CTAG	2 cut(s)	494, 615
MaeII	ACGT	2 cut(s)	546, 593
MaeIII	GTNAC	4 cut(s)	59, 95, 589, 673
MalI	GATC	5 cut(s)	102, 114, 138, 162, 378
MboI	GATC	5 cut(s)	100, 112, 136, 160, 376
MboII	GAAGA	1 cut(s)	203
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	1 cut(s)	624
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	544
MnlI	CCTC	4 cut(s)	80, 181, 202, 332
Mox20I	TGGCCA	1 cut(s)	150
Mph1103I	ATGCAT	1 cut(s)	82
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	3 cut(s)	38, 263, 435
MslI	CAYNNNNRTG	7 cut(s)	47, 81, 108, 144, 168, 174, 455
Msp20I	TGGCCA	1 cut(s)	150
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	510
NciI	CCSGG	1 cut(s)	490
NdeI	CATATG	1 cut(s)	347
NdeII	GATC	5 cut(s)	100, 112, 136, 160, 376
NmuCI	GTSAC	2 cut(s)	59, 95
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	2 cut(s)	84, 296
PagI	TCATGA	2 cut(s)	109, 175
PcsI	WCGNNNNNNNCGW	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	16
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	7 cut(s)	47, 81, 108, 144, 168, 174, 455
SaqAI	TTAA	3 cut(s)	38, 263, 435
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	5 cut(s)	100, 112, 136, 160, 376
ScaI	AGTACT	1 cut(s)	655
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	490
SetI	ASST	6 cut(s)	97, 286, 543, 549, 596, 614
SfaNI	GCATC	4 cut(s)	351, 420, 513, 522
SmiMI	CAYNNNNRTG	7 cut(s)	47, 81, 108, 144, 168, 174, 455
Sse9I	AATT	1 cut(s)	624
SsiI	CCGC	1 cut(s)	15
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	2 cut(s)	494, 615
StyD4I	CCNGG	1 cut(s)	488
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	4 cut(s)	562, 574, 647, 693
TaiI	ACGT	2 cut(s)	549, 596
TaqI	TCGA	1 cut(s)	428
TasI	AATT	1 cut(s)	624
TatI	WGTACW	1 cut(s)	653
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	3 cut(s)	38, 263, 435
Tru9I	TTAA	3 cut(s)	38, 263, 435
TseFI	GTSAC	2 cut(s)	59, 95
Tsp45I	GTSAC	2 cut(s)	59, 95
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	307
XceI	RCATGY	2 cut(s)	84, 296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XspI	CTAG	2 cut(s)	494, 615
ZrmI	AGTACT	1 cut(s)	655
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.