Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Forward (+)

74537861 .. 74539888

Gene Structure 2028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG470400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTGTGGCAAAGTTGGATGCTTTTTACTAGTGTATTGATCATTTGGAATTCCCCAAATTTTGAGTCTTTAGATTCTTGGAGAAGCAAGATGGAGCATGAGAAGGTTCCCTTATCTAGAACAGAGTCCCAGCATGAAATTGAGATCCCGATAGTCTCTGAAATTATTGATCTTCTGCCTGTGCCACAAAAGTTACCTTGCTCTTCCATCTGTGGTTTCTCCAAGAAAGAAAGCAGTAATTTGGATTCAAAACAACGTTCACAATCAGCAACTAAACTTCGTGTACTCATAATTGTCTATATGTTGTTTATGGTTGTTGAAATTGTTGGTGGTGTAAAATCGAACAGCCTGGCAGTACTCACAGATGCAGCCCACATGCTGACTGATTCTGTTGGAGTAATGATTGCCGCAGCCATCATTTGGGCGAAGCCAGATTATTTAGTTGTTGATCTGATCTGCACACTCATCTTTTCTGTTTTTGCTGTAAGCACAACTATACCGATGCTCAGAAATACATATGGCATATTGATGCAGAGAACACCAAGTGAGATTGATATTGACAAGCTAGAGAAAGGTCTCAAGTGCATCAAAGGAGTTCAGGATGTTCATGACCTACATGTTTGGGCACTAACAGTTGGAAAAATGGTATTGTCGTGTCATGTCACCGCGGATTCTACAGTAGTCTCAAGTCAGATAATTGATGAGATTAGTGATTTTTGTGAAAAAACTTACAGAATACATGATGTTACTGTACAGATTGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

255

Amino Acids

28.63

Weight (kDa)

5.48

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	94 - 141	9e-07	Cation efflux transmembrane domain
ZT_dimer	PF16916	181 - 254	1.2e-14	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	420
AccII	CGCG	1 cut(s)	668
AciI	CCGC	3 cut(s)	408, 666, 668
AclI	AACGTT	1 cut(s)	256
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	49, 58
AdeI	CACNNNGTG	1 cut(s)	545
AfaI	GTAC	3 cut(s)	285, 357, 753
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	3 cut(s)	249, 320, 761
AhlI	ACTAGT	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	1 cut(s)	565
AluI	AGCT	1 cut(s)	565
Alw26I	GTCTC	3 cut(s)	160, 581, 688
AlwI	GGATC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	368, 410
ApoI	RAATTY	2 cut(s)	49, 58
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AsuHPI	GGTGA	1 cut(s)	655
BaeGI	GKGCMC	1 cut(s)	628
BbvI	GCAGC	2 cut(s)	380, 422
BccI	CCATC	3 cut(s)	85, 215, 422
BciT130I	CCWGG	1 cut(s)	350
BclI	TGATCA	1 cut(s)	39
BcoDI	GTCTC	3 cut(s)	160, 581, 688
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	3 cut(s)	30, 117, 566
BfmI	CTRYAG	1 cut(s)	675
BisI	GCNGC	3 cut(s)	369, 408, 411
BlsI	GCNGC	3 cut(s)	370, 409, 412
BmcAI	AGTACT	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	5 cut(s)	9, 355, 492, 519, 594
BpuEI	CTTGAG	2 cut(s)	563, 670
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	1 cut(s)	666
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	2 cut(s)	24, 607
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	520
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	2 cut(s)	380, 422
BseYI	CCCAGC	1 cut(s)	129
BsgI	GTGCAG	1 cut(s)	442
Bsh1236I	CGCG	1 cut(s)	668
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	3 cut(s)	160, 581, 688
BsmFI	GGGAC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp1407I	TGTACA	1 cut(s)	751
Bsp143I	GATC	5 cut(s)	39, 144, 169, 448, 453
BspACI	CCGC	3 cut(s)	408, 666, 668
BspCNI	CTCAG	1 cut(s)	519
BspFNI	CGCG	1 cut(s)	668
BspHI	TCATGA	1 cut(s)	607
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	139
BspQI	GCTCTTC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	581
BsrGI	TGTACA	1 cut(s)	751
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	5 cut(s)	39, 144, 169, 448, 453
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	4 cut(s)	634, 679, 751, 765
Bst6I	CTCTTC	1 cut(s)	208
BstAUI	TGTACA	1 cut(s)	751
BstDEI	CTNAG	1 cut(s)	506
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	2 cut(s)	24, 607
BstFNI	CGCG	1 cut(s)	668
BstKTI	GATC	5 cut(s)	42, 147, 172, 451, 456
BstMAI	GTCTC	3 cut(s)	160, 581, 688
BstMBI	GATC	5 cut(s)	39, 144, 169, 448, 453
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	2 cut(s)	379, 620
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	675
BstSLI	GKGCMC	1 cut(s)	628
BstUI	CGCG	1 cut(s)	668
BstV1I	GCAGC	2 cut(s)	380, 422
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	2 cut(s)	24, 607
CciI	TCATGA	1 cut(s)	607
Cfr42I	CCGCGG	1 cut(s)	669
Csp6I	GTAC	3 cut(s)	284, 356, 752
CviAII	CATG	7 cut(s)	98, 134, 376, 608, 617, 659, 740
CviJI	RGCY	5 cut(s)	348, 371, 413, 430, 565
CviKI_1	RGCY	5 cut(s)	348, 371, 413, 430, 565
CviQI	GTAC	3 cut(s)	284, 356, 752
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	5 cut(s)	41, 146, 171, 450, 455
DpnII	GATC	5 cut(s)	39, 144, 169, 448, 453
DraIII	CACNNNGTG	1 cut(s)	545
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	581
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	348
FaeI	CATG	7 cut(s)	101, 137, 379, 611, 620, 662, 743
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	7 cut(s)	97, 133, 375, 607, 616, 658, 739
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	369, 408, 411
FokI	GGATG	2 cut(s)	31, 614
Fsp4HI	GCNGC	3 cut(s)	369, 408, 411
FspBI	CTAG	3 cut(s)	30, 117, 566
GluI	GCNGC	3 cut(s)	369, 408, 411
GsaI	CCCAGC	1 cut(s)	133
Hin1II	CATG	7 cut(s)	101, 137, 379, 611, 620, 662, 743
HinfI	GANTC	6 cut(s)	65, 74, 125, 245, 386, 671
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	2 cut(s)	260, 284
Hpy188I	TCNGA	4 cut(s)	160, 453, 509, 693
Hpy188III	TCNNGA	4 cut(s)	117, 148, 599, 608
Hpy8I	GTNNAC	2 cut(s)	260, 284
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	4 cut(s)	634, 679, 751, 765
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	4 cut(s)	368, 459, 532, 585
HpyF3I	CTNAG	1 cut(s)	506
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	7 cut(s)	101, 137, 379, 611, 620, 662, 743
Ksp22I	TGATCA	1 cut(s)	39
KspI	CCGCGG	1 cut(s)	669
Kzo9I	GATC	5 cut(s)	39, 144, 169, 448, 453
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	6 cut(s)	143, 192, 335, 362, 444, 584
Lsp1109I	GCAGC	2 cut(s)	380, 422
LweI	GCATC	5 cut(s)	9, 355, 492, 519, 594
MaeI	CTAG	3 cut(s)	30, 117, 566
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	3 cut(s)	192, 661, 745
MalI	GATC	5 cut(s)	41, 146, 171, 450, 455
MboI	GATC	5 cut(s)	39, 144, 169, 448, 453
MboII	GAAGA	2 cut(s)	164, 195
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	8 cut(s)	49, 58, 138, 162, 238, 291, 321, 696
MlyI	GAGTC	2 cut(s)	74, 134
MmeI	TCCRAC	2 cut(s)	373, 616
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	668
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	668
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	5 cut(s)	39, 144, 169, 448, 453
NlaIII	CATG	7 cut(s)	101, 137, 379, 611, 620, 662, 743
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	661
NspI	RCATGY	2 cut(s)	379, 620
PagI	TCATGA	1 cut(s)	607
PciI	ACATGT	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	208
PfeI	GAWTC	4 cut(s)	74, 245, 386, 671
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	370, 409, 412
PleI	GAGTC	2 cut(s)	73, 133
PpsI	GAGTC	2 cut(s)	73, 133
PscI	ACATGT	1 cut(s)	616
Psp1406I	AACGTT	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	348
PspFI	CCCAGC	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	144
RsaI	GTAC	3 cut(s)	285, 357, 753
RsaNI	GTAC	3 cut(s)	284, 356, 752
RseI	CAYNNNNRTG	1 cut(s)	527
SacII	CCGCGG	1 cut(s)	669
SapI	GCTCTTC	1 cut(s)	208
SatI	GCNGC	3 cut(s)	369, 408, 411
Sau3AI	GATC	5 cut(s)	39, 144, 169, 448, 453
ScaI	AGTACT	1 cut(s)	357
SchI	GAGTC	2 cut(s)	74, 134
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	628
SetI	ASST	6 cut(s)	108, 199, 259, 567, 577, 615
SfaNI	GCATC	5 cut(s)	9, 355, 492, 519, 594
SfcI	CTRYAG	1 cut(s)	675
Sfr303I	CCGCGG	1 cut(s)	669
SgrBI	CCGCGG	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	578, 685
SmoI	CTYRAG	2 cut(s)	578, 685
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	8 cut(s)	49, 58, 138, 162, 238, 291, 321, 696
SsiI	CCGC	3 cut(s)	408, 666, 668
SspMI	CTAG	3 cut(s)	30, 117, 566
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	4 cut(s)	634, 679, 751, 765
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	341
TasI	AATT	8 cut(s)	49, 58, 138, 162, 238, 291, 321, 696
TatI	WGTACW	3 cut(s)	283, 355, 751
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	4 cut(s)	74, 245, 386, 671
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	2 cut(s)	368, 410
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	2 cut(s)	150, 596
Van91I	CCANNNNNTGG	1 cut(s)	420
XapI	RAATTY	2 cut(s)	49, 58
XbaI	TCTAGA	1 cut(s)	116
XceI	RCATGY	2 cut(s)	379, 620
XspI	CTAG	3 cut(s)	30, 117, 566
ZrmI	AGTACT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.