Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Forward (+)

72929154 .. 72931911

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGATGGAGCATGAGAAGGTTCCCTTATCTAGAACAGAGTCCCAGCATGAAATTGAGATCCCGATAGTCTCTGAAATTATTGATCTTCTGCCTGTGCCACAAAAGTTACCTTGCTCTTCCATATGTGGTTTCTCCAAGAAAGAAAGCAGTAATTTGGATTCAAAACAACGTTCACAATCAGCAACTAAACTTCGTGTACTCATAATTGTCTATATGTTGTTTATGGTTGTTGAAATTGTTGGTGGTGTAAAATCGAACAGCCTGGCAGTACTCACAGATGCAGCCCACATGCTTACTGATGTTAGTGGATTCGCTATTGCTCTTTTTGCAGTAATAGCTTCAGGTTGGGAGGCAACATCATACCAGTCTTTTGGATATCACCGTCTTGAGGTTTTGAGTGCGCTTCTATCTGTGCTGCTGATATGGGTGGTCGCTGCAATCTTGATCTATGAAGCAGTCAACAGAATGCTTCACAAGCATGCAATGGTCAATGGGGTTCTCATGTTTGCAGTTGCAGCATTTGGATTTTCGGTTAATTTTATCATGGCCATGTGGCTCGGTCACAATCACACTCACCATCATCATCATCAGGCTTGTGGAGACTGGGATCATGATCATGATCATGGTCATAATCATAATCATGATCATGGCAAGGAGGAAGCATGCGCAACAATTGAAGACGATGAAACTAGCTTGGTGTCAATTCCTCCAGTAAAGACTAAAATATTAAACATAAATCTCCAAGGAGCTTACCTGCATGTTATGGCCGACATGATTCAGTCTGTTGGAGTAATGATTGCCGCAGCCATCATTTGGGCGAAGCCAGATTATTTAGTTGTTGATCTGATCTGCACACTCATCTTTTCTGTTTTTGCTGTAAGCACAACTATACCGATGCTCAGAAATACATATGGCATATTGATGCAGAGAACTCCAAGTGAGATTGATATTGACAAGCTAGAGAAAGGTCTCAAGTGCATCAAAGGAGTTCAGGATGTTCATGACCTACATGTTTGGGCACTAACGGTTGGAAAAATGGTATTGTCGTGTCATGTCACCGCGGATTCTACAGTAGGCTCAAGTCAGATAATTGATGAGATTAGTGATTTATGTGAAAAAACTTACAGAATACATGATGTTACTGTACAGATTGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

386

Amino Acids

42.83

Weight (kDa)

5.81

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	65 - 308	4.5e-40	Cation efflux transmembrane domain
ZT_dimer	PF16916	312 - 385	7.5e-15	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	667
Acc36I	ACCTGC	1 cut(s)	762
AccB7I	CCANNNNNTGG	1 cut(s)	813
AccII	CGCG	1 cut(s)	1061
AciI	CCGC	3 cut(s)	801, 1059, 1061
AclI	AACGTT	1 cut(s)	169
AclWI	GGATC	2 cut(s)	52, 615
AcoI	YGGCCR	2 cut(s)	546, 765
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	3 cut(s)	198, 270, 1146
AfiI	CCNNNNNNNGG	2 cut(s)	388, 813
AflIII	ACRYGT	1 cut(s)	1009
AgsI	TTSAA	4 cut(s)	162, 233, 677, 1154
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	4 cut(s)	338, 693, 749, 958
AluI	AGCT	4 cut(s)	338, 693, 749, 958
Alw26I	GTCTC	3 cut(s)	73, 594, 974
AlwI	GGATC	2 cut(s)	52, 615
AoxI	GGCC	2 cut(s)	546, 765
ApeKI	GCWGC	5 cut(s)	281, 415, 434, 515, 803
AspLEI	GCGC	2 cut(s)	403, 668
AsuHPI	GGTGA	3 cut(s)	371, 566, 1048
BaeGI	GKGCMC	1 cut(s)	1021
BalI	TGGCCA	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	684
BbvI	GCAGC	5 cut(s)	293, 402, 421, 527, 815
BccI	CCATC	2 cut(s)	585, 815
BciT130I	CCWGG	1 cut(s)	263
BclI	TGATCA	3 cut(s)	613, 619, 643
BcoDI	GTCTC	3 cut(s)	73, 594, 974
BfaI	CTAG	3 cut(s)	30, 690, 959
BfmI	CTRYAG	1 cut(s)	1068
BfuAI	ACCTGC	1 cut(s)	762
BisI	GCNGC	6 cut(s)	282, 416, 435, 516, 801, 804
BlsI	GCNGC	6 cut(s)	283, 417, 436, 517, 802, 805
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	263
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	4 cut(s)	268, 885, 912, 987
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	1 cut(s)	684
BpmI	CTGGAG	1 cut(s)	693
BpuEI	CTTGAG	3 cut(s)	407, 956, 1063
BsaBI	GATNNNNATC	2 cut(s)	612, 618
BsaI	GGTCTC	1 cut(s)	974
BsaJI	CCNNGG	2 cut(s)	742, 1059
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 813
Bse1I	ACTGG	3 cut(s)	364, 608, 710
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	2 cut(s)	612, 618
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	742, 1059
BseGI	GGATG	1 cut(s)	1000
BseJI	GATNNNNATC	2 cut(s)	612, 618
BseLI	CCNNNNNNNGG	2 cut(s)	388, 813
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	913
BseNI	ACTGG	3 cut(s)	364, 608, 710
BseSI	GKGCMC	1 cut(s)	1021
BseXI	GCAGC	5 cut(s)	293, 402, 421, 527, 815
BseYI	CCCAGC	1 cut(s)	42
BsgI	GTGCAG	1 cut(s)	835
Bsh1236I	CGCG	1 cut(s)	1061
BshFI	GGCC	2 cut(s)	548, 767
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	388, 813
BsmAI	GTCTC	3 cut(s)	73, 594, 974
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	2 cut(s)	548, 767
Bso31I	GGTCTC	1 cut(s)	974
Bsp1286I	GDGCHC	1 cut(s)	1021
Bsp1407I	TGTACA	1 cut(s)	1144
Bsp143I	GATC	9 cut(s)	57, 82, 444, 607, 613, 619, 643, 841, 846
BspACI	CCGC	3 cut(s)	801, 1059, 1061
BspANI	GGCC	2 cut(s)	548, 767
BspCNI	CTCAG	1 cut(s)	912
BspFNI	CGCG	1 cut(s)	1061
BspHI	TCATGA	4 cut(s)	610, 616, 640, 1000
BspLI	GGNNCC	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	762
BspPI	GGATC	2 cut(s)	52, 615
BspQI	GCTCTTC	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	1144
BsrI	ACTGG	3 cut(s)	364, 608, 710
BssECI	CCNNGG	2 cut(s)	742, 1059
BssMI	GATC	9 cut(s)	57, 82, 444, 607, 613, 619, 643, 841, 846
BssT1I	CCWWGG	1 cut(s)	742
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	5 cut(s)	383, 1027, 1072, 1144, 1158
Bst6I	CTCTTC	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	1144
BstC8I	GCNNGC	2 cut(s)	480, 664
BstDEI	CTNAG	1 cut(s)	899
BstDSI	CCRYGG	1 cut(s)	1059
BstF5I	GGATG	1 cut(s)	1000
BstFNI	CGCG	1 cut(s)	1061
BstHHI	GCGC	2 cut(s)	403, 668
BstKTI	GATC	9 cut(s)	60, 85, 447, 610, 616, 622, 646, 844, 849
BstMAI	GTCTC	3 cut(s)	73, 594, 974
BstMBI	GATC	9 cut(s)	57, 82, 444, 607, 613, 619, 643, 841, 846
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 335, 475, 515
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	5 cut(s)	292, 482, 666, 761, 1013
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	1068
BstSLI	GKGCMC	1 cut(s)	1021
BstUI	CGCG	1 cut(s)	1061
BstV1I	GCAGC	5 cut(s)	293, 402, 421, 527, 815
BstV2I	GAAGAC	1 cut(s)	684
BstX2I	RGATCY	1 cut(s)	57
BstXI	CCANNNNNNTGG	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	548, 767
BtgI	CCRYGG	1 cut(s)	1059
BtsCI	GGATG	1 cut(s)	1000
BveI	ACCTGC	1 cut(s)	762
Cac8I	GCNNGC	2 cut(s)	480, 664
CciI	TCATGA	4 cut(s)	610, 616, 640, 1000
CfoI	GCGC	2 cut(s)	403, 668
Cfr42I	CCGCGG	1 cut(s)	1062
Csp6I	GTAC	3 cut(s)	197, 269, 1145
CviQI	GTAC	3 cut(s)	197, 269, 1145
DdeI	CTNAG	1 cut(s)	899
DpnI	GATC	9 cut(s)	59, 84, 446, 609, 615, 621, 645, 843, 848
DpnII	GATC	9 cut(s)	57, 82, 444, 607, 613, 619, 643, 841, 846
EaeI	YGGCCR	2 cut(s)	546, 765
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	742
Eco31I	GGTCTC	1 cut(s)	974
Eco32I	GATATC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	261
EcoRV	GATATC	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	742
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	1 cut(s)	25
FauNDI	CATATG	2 cut(s)	122, 910
FbaI	TGATCA	3 cut(s)	613, 619, 643
Fnu4HI	GCNGC	6 cut(s)	282, 416, 435, 516, 801, 804
FokI	GGATG	1 cut(s)	1007
Fsp4HI	GCNGC	6 cut(s)	282, 416, 435, 516, 801, 804
FspBI	CTAG	3 cut(s)	30, 690, 959
FspI	TGCGCA	1 cut(s)	667
GlaI	GCGC	2 cut(s)	402, 667
GluI	GCNGC	6 cut(s)	282, 416, 435, 516, 801, 804
GsaI	CCCAGC	1 cut(s)	46
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	2 cut(s)	548, 767
HhaI	GCGC	2 cut(s)	403, 668
Hin6I	GCGC	2 cut(s)	401, 666
HinP1I	GCGC	2 cut(s)	401, 666
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	5 cut(s)	38, 158, 309, 775, 1064
HphI	GGTGA	3 cut(s)	371, 566, 1048
Hpy166II	GTNNAC	3 cut(s)	173, 197, 460
Hpy188I	TCNGA	4 cut(s)	73, 846, 902, 1086
Hpy188III	TCNNGA	9 cut(s)	30, 61, 386, 442, 611, 617, 641, 992, 1001
Hpy8I	GTNNAC	3 cut(s)	173, 197, 460
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	5 cut(s)	383, 1027, 1072, 1144, 1158
HpyCH4IV	ACGT	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 335, 475, 515
HpyF3I	CTNAG	1 cut(s)	899
HpySE526I	ACGT	1 cut(s)	169
HspAI	GCGC	2 cut(s)	401, 666
Ksp22I	TGATCA	3 cut(s)	613, 619, 643
KspI	CCGCGG	1 cut(s)	1062
Kzo9I	GATC	9 cut(s)	57, 82, 444, 607, 613, 619, 643, 841, 846
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	7, 746
Lsp1109I	GCAGC	5 cut(s)	293, 402, 421, 527, 815
LweI	GCATC	4 cut(s)	268, 885, 912, 987
MaeI	CTAG	3 cut(s)	30, 690, 959
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	4 cut(s)	105, 560, 1054, 1138
MalI	GATC	9 cut(s)	59, 84, 446, 609, 615, 621, 645, 843, 848
MboI	GATC	9 cut(s)	57, 82, 444, 607, 613, 619, 643, 841, 846
MboII	GAAGA	3 cut(s)	77, 108, 689
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	1021
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	9 cut(s)	51, 75, 151, 204, 234, 535, 672, 702, 1089
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	2 cut(s)	766, 1009
MnlI	CCTC	4 cut(s)	343, 382, 649, 717
Mox20I	TGGCCA	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	2 cut(s)	534, 728
MslI	CAYNNNNRTG	7 cut(s)	477, 548, 615, 621, 639, 645, 920
Msp20I	TGGCCA	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	1061
MspR9I	CCNGG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	1061
MwoI	GCNNNNNNNGC	4 cut(s)	326, 335, 475, 515
NdeI	CATATG	2 cut(s)	122, 910
NdeII	GATC	9 cut(s)	57, 82, 444, 607, 613, 619, 643, 841, 846
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	560, 1054
NsbI	TGCGCA	1 cut(s)	667
NspI	RCATGY	5 cut(s)	292, 482, 666, 761, 1013
PaeI	GCATGC	2 cut(s)	482, 666
PagI	TCATGA	4 cut(s)	610, 616, 640, 1000
PciI	ACATGT	1 cut(s)	1009
PciSI	GCTCTTC	1 cut(s)	121
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	4 cut(s)	158, 309, 775, 1064
PflMI	CCANNNNNTGG	1 cut(s)	813
PkrI	GCNGC	6 cut(s)	283, 417, 436, 517, 802, 805
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PscI	ACATGT	1 cut(s)	1009
Psp1406I	AACGTT	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	3 cut(s)	198, 270, 1146
RsaNI	GTAC	3 cut(s)	197, 269, 1145
RseI	CAYNNNNRTG	7 cut(s)	477, 548, 615, 621, 639, 645, 920
SacII	CCGCGG	1 cut(s)	1062
SapI	GCTCTTC	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	534, 728
SatI	GCNGC	6 cut(s)	282, 416, 435, 516, 801, 804
Sau3AI	GATC	9 cut(s)	57, 82, 444, 607, 613, 619, 643, 841, 846
ScaI	AGTACT	1 cut(s)	270
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	1021
SfaNI	GCATC	4 cut(s)	268, 885, 912, 987
SfcI	CTRYAG	1 cut(s)	1068
Sfr303I	CCGCGG	1 cut(s)	1062
SgrBI	CCGCGG	1 cut(s)	1062
SmiMI	CAYNNNNRTG	7 cut(s)	477, 548, 615, 621, 639, 645, 920
SmlI	CTYRAG	3 cut(s)	386, 971, 1078
SmoI	CTYRAG	3 cut(s)	386, 971, 1078
SphI	GCATGC	2 cut(s)	482, 666
Sse9I	AATT	9 cut(s)	51, 75, 151, 204, 234, 535, 672, 702, 1089
SsiI	CCGC	3 cut(s)	801, 1059, 1061
SspI	AATATT	1 cut(s)	726
SspMI	CTAG	3 cut(s)	30, 690, 959
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	742
TaaI	ACNGT	5 cut(s)	383, 1027, 1072, 1144, 1158
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	254
TaqII	GACCGA	1 cut(s)	548
TasI	AATT	9 cut(s)	51, 75, 151, 204, 234, 535, 672, 702, 1089
TatI	WGTACW	3 cut(s)	196, 268, 1144
TauI	GCSGC	1 cut(s)	803
TfiI	GAWTC	4 cut(s)	158, 309, 775, 1064
Tru1I	TTAA	2 cut(s)	534, 728
Tru9I	TTAA	2 cut(s)	534, 728
TseFI	GTSAC	2 cut(s)	560, 1054
TseI	GCWGC	5 cut(s)	281, 415, 434, 515, 803
Tsp45I	GTSAC	2 cut(s)	560, 1054
TspDTI	ATGAA	4 cut(s)	63, 465, 699, 989
Van91I	CCANNNNNTGG	1 cut(s)	813
XbaI	TCTAGA	1 cut(s)	29
XceI	RCATGY	5 cut(s)	292, 482, 666, 761, 1013
XspI	CTAG	3 cut(s)	30, 690, 959
ZrmI	AGTACT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.