Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Forward (+)

75481858 .. 75483219

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG438700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAGCATGAGAAGGTTCCCTTATCTAGAACAGAGTCCCAGCATGAAATTGAGATCCCGATAGTCTCTGAAATTATTGATCTTCTGCCTGTGCCACAAAAGTTACCTTGCTCTTCCATCTGTGGTTTCTCCAAGAAAGAAAGCAGTAATTTGGATTCAAAACAACGTTCACAATCAGCAACTAAACTTCGTGTACTCATAATTGTCTATATGTTGTTTATGGTTGTTGAAATTGTTGGTGGTGTAAAATCGAACAGCCTGGCAGTACTCACAGATGCAGCCCACATGCTTACTGATGTTAGTGGATTCGCTATTGCTCTTTTTGCAGTAATAGCTTCAGGTTGGGAGGCAACATCATACCAGTCTTTTGGATATCACCGTCTTGAGGTTTTGAGTGCGCTTCTATCTGTGCTGCTGATATGGGTGGTCGCTGCGATCTTGATCTATGAAGCAGTCAACAGAATGCTTCACAAGCATGCAATGGTCAATGGGGTTCTCATGTTTGCAGTTGCAGCATTTGGATTTTCGGTTAATTTTATCATGGTCATGTGGCTCGGTCACAATCACACTCACCATCATCATCATCATCATCATGCTTGTGGAGACTTGGATCATCATCATGATCATGGTCATAATCATAATCATGATCATGGCAAGGAGGAAGCATGCGCAACAATTGAAGACGATGAAACTAGCTTGGTGTCAATTCCTCCAGTAAAGACTAAAATATTAAACATAAATCTCCAAGGAGCTTACCTGCATGTTATGGCCGACATGATTCAGTCTGTTGGAGTAATGATTGCCGCAGCCATCATTTGGGCGAAGCCAGATTATTTAGTTGTTGATCTGATCTGCACACTCATCTTTTCTGTTTTTGCTGTAAGCACAACTATACCGATGCTCAGAAATACATATGGCATATTGATGCAGAGAACTCCAAGTGAGATTGATATTGACAAGCTAGAGAAAGGTCTCAAGTGCATCAAAGGAGTTCAGGATGTTCATGACCTACATGTTTGGGCACTAACAGTTGGAAAAATGGTATTGTCGTGTCATGTCACCGCGGATTCTACAGTAATCTCAAGTCAGATAATTGATGAGATTAGTGATTTTTGTGAAAAAACTTACAGAATACATGATGTTACTGTACAGATTGAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

387

Amino Acids

43.04

Weight (kDa)

5.99

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_efflux	PF01545	64 - 309	8.2e-40	Cation efflux transmembrane domain
ZT_dimer	PF16916	313 - 386	4.4e-14	Cation efflux protein, cytoplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	670
Acc36I	ACCTGC	1 cut(s)	765
AccB7I	CCANNNNNTGG	1 cut(s)	816
AccII	CGCG	1 cut(s)	1064
AciI	CCGC	3 cut(s)	804, 1062, 1064
AclI	AACGTT	1 cut(s)	166
AclWI	GGATC	2 cut(s)	49, 618
AcoI	YGGCCR	1 cut(s)	768
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	3 cut(s)	195, 267, 1149
AfiI	CCNNNNNNNGG	2 cut(s)	385, 816
AflIII	ACRYGT	1 cut(s)	1012
AgsI	TTSAA	4 cut(s)	159, 230, 680, 1157
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	4 cut(s)	335, 696, 752, 961
AluI	AGCT	4 cut(s)	335, 696, 752, 961
Alw26I	GTCTC	3 cut(s)	70, 597, 977
AlwI	GGATC	2 cut(s)	49, 618
AoxI	GGCC	1 cut(s)	768
ApeKI	GCWGC	5 cut(s)	278, 412, 431, 512, 806
AspLEI	GCGC	2 cut(s)	400, 671
AsuHPI	GGTGA	3 cut(s)	368, 563, 1051
BaeGI	GKGCMC	1 cut(s)	1024
BbsI	GAAGAC	1 cut(s)	687
BbvI	GCAGC	5 cut(s)	290, 399, 418, 524, 818
BccI	CCATC	3 cut(s)	125, 582, 818
BciT130I	CCWGG	1 cut(s)	260
BclI	TGATCA	2 cut(s)	622, 646
BcoDI	GTCTC	3 cut(s)	70, 597, 977
BfaI	CTAG	3 cut(s)	27, 693, 962
BfmI	CTRYAG	1 cut(s)	1071
BfuAI	ACCTGC	1 cut(s)	765
BisI	GCNGC	6 cut(s)	279, 413, 432, 513, 804, 807
BlsI	GCNGC	6 cut(s)	280, 414, 433, 514, 805, 808
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	4 cut(s)	265, 888, 915, 990
BpiI	GAAGAC	1 cut(s)	687
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	3 cut(s)	404, 959, 1066
BsaBI	GATNNNNATC	2 cut(s)	440, 615
BsaI	GGTCTC	1 cut(s)	977
BsaJI	CCNNGG	2 cut(s)	745, 1062
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 816
Bse1I	ACTGG	2 cut(s)	361, 713
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	2 cut(s)	440, 615
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	745, 1062
BseGI	GGATG	1 cut(s)	1003
BseJI	GATNNNNATC	2 cut(s)	440, 615
BseLI	CCNNNNNNNGG	2 cut(s)	385, 816
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	916
BseNI	ACTGG	2 cut(s)	361, 713
BseSI	GKGCMC	1 cut(s)	1024
BseXI	GCAGC	5 cut(s)	290, 399, 418, 524, 818
BseYI	CCCAGC	1 cut(s)	39
BsgI	GTGCAG	1 cut(s)	838
Bsh1236I	CGCG	1 cut(s)	1064
BshFI	GGCC	1 cut(s)	770
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	385, 816
BsmAI	GTCTC	3 cut(s)	70, 597, 977
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	770
Bso31I	GGTCTC	1 cut(s)	977
Bsp1286I	GDGCHC	1 cut(s)	1024
Bsp1407I	TGTACA	1 cut(s)	1147
Bsp143I	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
BspACI	CCGC	3 cut(s)	804, 1062, 1064
BspANI	GGCC	1 cut(s)	770
BspCNI	CTCAG	1 cut(s)	915
BspFNI	CGCG	1 cut(s)	1064
BspHI	TCATGA	3 cut(s)	619, 643, 1003
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	765
BspPI	GGATC	2 cut(s)	49, 618
BspQI	GCTCTTC	1 cut(s)	118
BspTNI	GGTCTC	1 cut(s)	977
BsrDI	GCAATG	1 cut(s)	486
BsrGI	TGTACA	1 cut(s)	1147
BsrI	ACTGG	2 cut(s)	361, 713
BssECI	CCNNGG	2 cut(s)	745, 1062
BssMI	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
BssT1I	CCWWGG	1 cut(s)	745
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	5 cut(s)	380, 1030, 1075, 1147, 1161
Bst6I	CTCTTC	1 cut(s)	118
BstAUI	TGTACA	1 cut(s)	1147
BstC8I	GCNNGC	2 cut(s)	477, 667
BstDEI	CTNAG	1 cut(s)	902
BstDSI	CCRYGG	1 cut(s)	1062
BstF5I	GGATG	1 cut(s)	1003
BstFNI	CGCG	1 cut(s)	1064
BstHHI	GCGC	2 cut(s)	400, 671
BstKTI	GATC	9 cut(s)	57, 82, 438, 444, 613, 625, 649, 847, 852
BstMAI	GTCTC	3 cut(s)	70, 597, 977
BstMBI	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	5 cut(s)	289, 479, 669, 764, 1016
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	1 cut(s)	1071
BstSLI	GKGCMC	1 cut(s)	1024
BstUI	CGCG	1 cut(s)	1064
BstV1I	GCAGC	5 cut(s)	290, 399, 418, 524, 818
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	770
BtgI	CCRYGG	1 cut(s)	1062
BtsCI	GGATG	1 cut(s)	1003
BveI	ACCTGC	1 cut(s)	765
Cac8I	GCNNGC	2 cut(s)	477, 667
CciI	TCATGA	3 cut(s)	619, 643, 1003
CfoI	GCGC	2 cut(s)	400, 671
Cfr42I	CCGCGG	1 cut(s)	1065
Csp6I	GTAC	3 cut(s)	194, 266, 1148
CviQI	GTAC	3 cut(s)	194, 266, 1148
DdeI	CTNAG	1 cut(s)	902
DpnI	GATC	9 cut(s)	56, 81, 437, 443, 612, 624, 648, 846, 851
DpnII	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
EaeI	YGGCCR	1 cut(s)	768
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	745
Eco31I	GGTCTC	1 cut(s)	977
Eco32I	GATATC	1 cut(s)	374
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	745
ErhI	CCWWGG	1 cut(s)	745
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	913
FbaI	TGATCA	2 cut(s)	622, 646
Fnu4HI	GCNGC	6 cut(s)	279, 413, 432, 513, 804, 807
FokI	GGATG	1 cut(s)	1010
Fsp4HI	GCNGC	6 cut(s)	279, 413, 432, 513, 804, 807
FspBI	CTAG	3 cut(s)	27, 693, 962
FspI	TGCGCA	1 cut(s)	670
GlaI	GCGC	2 cut(s)	399, 670
GluI	GCNGC	6 cut(s)	279, 413, 432, 513, 804, 807
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	770
HhaI	GCGC	2 cut(s)	400, 671
Hin6I	GCGC	2 cut(s)	398, 669
HinP1I	GCGC	2 cut(s)	398, 669
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	5 cut(s)	35, 155, 306, 778, 1067
HphI	GGTGA	3 cut(s)	368, 563, 1051
Hpy166II	GTNNAC	3 cut(s)	170, 194, 457
Hpy188I	TCNGA	4 cut(s)	70, 849, 905, 1089
Hpy188III	TCNNGA	8 cut(s)	27, 58, 383, 439, 620, 644, 995, 1004
Hpy8I	GTNNAC	3 cut(s)	170, 194, 457
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	5 cut(s)	380, 1030, 1075, 1147, 1161
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	9 cut(s)	278, 326, 479, 506, 512, 760, 855, 928, 981
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
HpyF3I	CTNAG	1 cut(s)	902
HpySE526I	ACGT	1 cut(s)	166
HspAI	GCGC	2 cut(s)	398, 669
Ksp22I	TGATCA	2 cut(s)	622, 646
KspI	CCGCGG	1 cut(s)	1065
Kzo9I	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	2 cut(s)	4, 749
Lsp1109I	GCAGC	5 cut(s)	290, 399, 418, 524, 818
LweI	GCATC	4 cut(s)	265, 888, 915, 990
MaeI	CTAG	3 cut(s)	27, 693, 962
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	4 cut(s)	102, 557, 1057, 1141
MalI	GATC	9 cut(s)	56, 81, 437, 443, 612, 624, 648, 846, 851
MboI	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
MboII	GAAGA	3 cut(s)	74, 105, 692
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	1024
MluCI	AATT	9 cut(s)	48, 72, 148, 201, 231, 532, 675, 705, 1092
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	769, 1012
MnlI	CCTC	4 cut(s)	340, 379, 652, 720
MseI	TTAA	2 cut(s)	531, 731
MslI	CAYNNNNRTG	9 cut(s)	474, 545, 591, 597, 618, 624, 642, 648, 923
MspA1I	CMGCKG	1 cut(s)	1064
MspR9I	CCNGG	1 cut(s)	260
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	1064
MwoI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	2 cut(s)	557, 1057
NsbI	TGCGCA	1 cut(s)	670
NspI	RCATGY	5 cut(s)	289, 479, 669, 764, 1016
PaeI	GCATGC	2 cut(s)	479, 669
PagI	TCATGA	3 cut(s)	619, 643, 1003
PciI	ACATGT	1 cut(s)	1012
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	4 cut(s)	155, 306, 778, 1067
PflMI	CCANNNNNTGG	1 cut(s)	816
PkrI	GCNGC	6 cut(s)	280, 414, 433, 514, 805, 808
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PscI	ACATGT	1 cut(s)	1012
Psp1406I	AACGTT	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	258
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	3 cut(s)	195, 267, 1149
RsaNI	GTAC	3 cut(s)	194, 266, 1148
RseI	CAYNNNNRTG	9 cut(s)	474, 545, 591, 597, 618, 624, 642, 648, 923
SacII	CCGCGG	1 cut(s)	1065
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	531, 731
SatI	GCNGC	6 cut(s)	279, 413, 432, 513, 804, 807
Sau3AI	GATC	9 cut(s)	54, 79, 435, 441, 610, 622, 646, 844, 849
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	1024
SfaNI	GCATC	4 cut(s)	265, 888, 915, 990
SfcI	CTRYAG	1 cut(s)	1071
Sfr303I	CCGCGG	1 cut(s)	1065
SgrBI	CCGCGG	1 cut(s)	1065
SmiMI	CAYNNNNRTG	9 cut(s)	474, 545, 591, 597, 618, 624, 642, 648, 923
SmlI	CTYRAG	3 cut(s)	383, 974, 1081
SmoI	CTYRAG	3 cut(s)	383, 974, 1081
SphI	GCATGC	2 cut(s)	479, 669
Sse9I	AATT	9 cut(s)	48, 72, 148, 201, 231, 532, 675, 705, 1092
SsiI	CCGC	3 cut(s)	804, 1062, 1064
SspI	AATATT	1 cut(s)	729
SspMI	CTAG	3 cut(s)	27, 693, 962
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	745
TaaI	ACNGT	5 cut(s)	380, 1030, 1075, 1147, 1161
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	251
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	9 cut(s)	48, 72, 148, 201, 231, 532, 675, 705, 1092
TatI	WGTACW	3 cut(s)	193, 265, 1147
TauI	GCSGC	1 cut(s)	806
TfiI	GAWTC	4 cut(s)	155, 306, 778, 1067
Tru1I	TTAA	2 cut(s)	531, 731
Tru9I	TTAA	2 cut(s)	531, 731
TseFI	GTSAC	2 cut(s)	557, 1057
TseI	GCWGC	5 cut(s)	278, 412, 431, 512, 806
Tsp45I	GTSAC	2 cut(s)	557, 1057
TspDTI	ATGAA	4 cut(s)	60, 462, 702, 992
Van91I	CCANNNNNTGG	1 cut(s)	816
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	5 cut(s)	289, 479, 669, 764, 1016
XspI	CTAG	3 cut(s)	27, 693, 962
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.