Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Reverse (-)

4684974 .. 4688900

Gene Structure 3927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G068100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGATGGACCATGAGGAGGTACCCTTTACTAGAACAGAGTCTCAGGAAATTGAGATCCCAATAGTATCTGAAGGAAGTGATGCTCTTCCTGTGCCACCCCAGTTACCTTGCTCTTCTGTTTGTGTTTTCTTCAAAAAAGAACATTGTAGTTTGGATTCAAGAGAACGGTCTAAGTCAGCAAAAAAACTTTGTGGACTCATTATTGCCTCTGTCTTGTTTATGGTGGTGGAAATTATTGGTGGTGTCAAAGCCAATAGCCTTGCAGTACTCACGGATGCAGCCCACTTGCTCACTGATGTTGCTGGATTCTCCATTGCTCTTTTCACAGTAATGGCTTCAGGTTGGGAGGCAACATCATACCAGTCTTTCGGATATCACCGTCTTGAGGTTTTGAGTGCCCTTCTGTCTGTGCAGCTAATATGGCTGGTCTCTGGGATCTTGATATTTGAAGCAGTTGACAGAATCCTTCACAAAAATGAAAAGGTGAATGGATTCCTCATGTTTGAAGTTGCAGCATTTGGATTTCTTGTCAACTTAATCATGGTCATGTGGCTCGGTCATGATCACACTCATCATGCCTGTGGAGGCTTAGGTCATGATCATCATCACGATCATAATCAGGAGCATAATCACGATCATCATCACGATCATCATCACAACAGGGAGGAAGAATATGCAATAATTGAAGACGATAAAACTAGTCTGGTATCAAGTTCTTCAGAAAATACTAAAATTTTAAACATAAACCTCCAAGGAGCTTACTTGCATGTCATCGCTGATATGATTCAGTCTGTTGGGGTGATGATTGCTGGAGGCATCATATGGGCAAAGCCAGATTGGTTAGTAGTTGATCTGATATGCACACTCATATTTTCTGTTTTTGCTGTTAGCACAACTATATCGATGCTTAGAAATATATATGGCATACTGATGGAGAGAACACCAAGTGAGATTGATATCACCAATCTAGAAAAAGGCCTCAAGTGCATCAAAGGGGTTGAGGATATTCAAGACCTACATGTTTGGGAACTGACAGTTGGAAAAACGGTTTTGTCTTGCCATGTAAAGGCAGAGCCGGCAGTGAGCTCTAGTCAGATAATTGGCAAAATTAGGGATTACTGTGAAAAAACTTACAGAATACATCATGTAACTATACAGATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

389

Amino Acids

43.3

Weight (kDa)

5.68

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	19
AclWI	GGATC	2 cut(s)	49, 443
AcsI	RAATTY	1 cut(s)	732
AcuI	CTGAAG	3 cut(s)	90, 321, 702
AdeI	CACNNNGTG	1 cut(s)	947
AfaI	GTAC	2 cut(s)	21, 267
AfiI	CCNNNNNNNGG	3 cut(s)	16, 385, 1066
AflIII	ACRYGT	1 cut(s)	1018
AgsI	TTSAA	7 cut(s)	133, 159, 449, 506, 686, 1010, 1163
AhlI	ACTAGT	1 cut(s)	698
AjuI	GAANNNNNNNTTGG	2 cut(s)	1020, 1052
AluBI	AGCT	3 cut(s)	415, 758, 1086
AluI	AGCT	3 cut(s)	415, 758, 1086
Alw21I	GWGCWC	1 cut(s)	1088
Alw26I	GTCTC	2 cut(s)	45, 433
AlwI	GGATC	2 cut(s)	49, 443
AoxI	GGCC	1 cut(s)	976
ApeKI	GCWGC	3 cut(s)	278, 412, 512
ApoI	RAATTY	1 cut(s)	732
Asp700I	GAANNNNTTC	1 cut(s)	491
Asp718I	GGTACC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	4 cut(s)	368, 496, 811, 952
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	1088
BbsI	GAAGAC	1 cut(s)	693
Bbv12I	GWGCWC	1 cut(s)	1088
BbvI	GCAGC	3 cut(s)	290, 424, 524
BccI	CCATC	1 cut(s)	925
BclI	TGATCA	2 cut(s)	562, 598
BcoDI	GTCTC	2 cut(s)	45, 433
BcuI	ACTAGT	1 cut(s)	698
BfaI	CTAG	4 cut(s)	30, 699, 968, 1089
BisI	GCNGC	3 cut(s)	279, 413, 513
BlsI	GCNGC	3 cut(s)	280, 414, 514
BmcAI	AGTACT	1 cut(s)	267
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	94
BmsI	GCATC	5 cut(s)	70, 265, 825, 894, 996
BmuI	ACTGGG	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	693
BpmI	CTGGAG	1 cut(s)	831
Bpu10I	CCTNAGC	1 cut(s)	589
BpuEI	CTTGAG	2 cut(s)	404, 965
Bsa29I	ATCGAT	1 cut(s)	902
BsaBI	GATNNNNATC	5 cut(s)	603, 615, 639, 651, 956
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 385, 1066
Bse118I	RCCGGY	1 cut(s)	1075
Bse1I	ACTGG	2 cut(s)	100, 361
Bse3DI	GCAATG	1 cut(s)	312
Bse8I	GATNNNNATC	5 cut(s)	603, 615, 639, 651, 956
BseCI	ATCGAT	1 cut(s)	902
BseDI	CCNNGG	1 cut(s)	751
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	5 cut(s)	603, 615, 639, 651, 956
BseLI	CCNNNNNNNGG	3 cut(s)	16, 385, 1066
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	2 cut(s)	100, 361
BseRI	GAGGAG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	3 cut(s)	290, 424, 524
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	1 cut(s)	978
BshNI	GGYRCC	1 cut(s)	19
BshVI	ATCGAT	1 cut(s)	902
BsiHKAI	GWGCWC	1 cut(s)	1088
BsiSI	CCGG	1 cut(s)	1076
BslI	CCNNNNNNNGG	3 cut(s)	16, 385, 1066
BsmAI	GTCTC	2 cut(s)	45, 433
BsnI	GGCC	1 cut(s)	978
Bso31I	GGTCTC	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	400, 1088
Bsp143I	GATC	8 cut(s)	54, 435, 562, 598, 610, 634, 646, 850
BspANI	GGCC	1 cut(s)	978
BspCNI	CTCAG	1 cut(s)	55
BspDI	ATCGAT	1 cut(s)	902
BspHI	TCATGA	2 cut(s)	559, 595
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	2 cut(s)	49, 443
BspQI	GCTCTTC	2 cut(s)	90, 118
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	1075
BsrI	ACTGG	2 cut(s)	100, 361
BssAI	RCCGGY	1 cut(s)	1075
BssECI	CCNNGG	1 cut(s)	751
BssMI	GATC	8 cut(s)	54, 435, 562, 598, 610, 634, 646, 850
BssT1I	CCWWGG	1 cut(s)	751
Bst4CI	ACNGT	6 cut(s)	168, 328, 380, 1036, 1048, 1121
Bst6I	CTCTTC	2 cut(s)	90, 118
BstC8I	GCNNGC	1 cut(s)	1077
BstDEI	CTNAG	4 cut(s)	42, 171, 589, 908
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	8 cut(s)	57, 438, 565, 601, 613, 637, 649, 853
BstMAI	GTCTC	2 cut(s)	45, 433
BstMBI	GATC	8 cut(s)	54, 435, 562, 598, 610, 634, 646, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	421, 984, 1076
BstNSI	RCATGY	2 cut(s)	770, 1022
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	3 cut(s)	290, 424, 524
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	2 cut(s)	54, 435
BstYI	RGATCY	2 cut(s)	54, 435
Bsu15I	ATCGAT	1 cut(s)	902
BsuRI	GGCC	1 cut(s)	978
BsuTUI	ATCGAT	1 cut(s)	902
BtgZI	GCGATG	1 cut(s)	757
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	1086
BtsIMutI	CAGTG	2 cut(s)	291, 1086
Cac8I	GCNNGC	1 cut(s)	1077
CciI	TCATGA	2 cut(s)	559, 595
Cfr10I	RCCGGY	1 cut(s)	1075
Cfr13I	GGNCC	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	902
Csp6I	GTAC	2 cut(s)	20, 266
CviQI	GTAC	2 cut(s)	20, 266
DdeI	CTNAG	4 cut(s)	42, 171, 589, 908
DpnI	GATC	8 cut(s)	56, 437, 564, 600, 612, 636, 648, 852
DpnII	GATC	8 cut(s)	54, 435, 562, 598, 610, 634, 646, 850
DraI	TTTAAA	1 cut(s)	738
DraIII	CACNNNGTG	1 cut(s)	947
Eam1104I	CTCTTC	2 cut(s)	90, 118
EarI	CTCTTC	2 cut(s)	90, 118
Ecl136II	GAGCTC	1 cut(s)	1086
Eco130I	CCWWGG	1 cut(s)	751
Eco147I	AGGCCT	1 cut(s)	978
Eco24I	GRGCYC	1 cut(s)	1088
Eco31I	GGTCTC	1 cut(s)	433
Eco32I	GATATC	2 cut(s)	374, 958
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	1086
Eco57I	CTGAAG	3 cut(s)	90, 321, 702
EcoICRI	GAGCTC	1 cut(s)	1086
EcoRV	GATATC	2 cut(s)	374, 958
EcoT14I	CCWWGG	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	1088
ErhI	CCWWGG	1 cut(s)	751
FauNDI	CATATG	1 cut(s)	821
FbaI	TGATCA	2 cut(s)	562, 598
Fnu4HI	GCNGC	3 cut(s)	279, 413, 513
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	1088
Fsp4HI	GCNGC	3 cut(s)	279, 413, 513
FspBI	CTAG	4 cut(s)	30, 699, 968, 1089
GluI	GCNGC	3 cut(s)	279, 413, 513
GsuI	CTGGAG	1 cut(s)	831
HaeIII	GGCC	1 cut(s)	978
HapII	CCGG	1 cut(s)	1076
HincII	GTYRAC	2 cut(s)	457, 532
HindII	GTYRAC	2 cut(s)	457, 532
HinfI	GANTC	7 cut(s)	38, 155, 195, 306, 462, 492, 784
HpaII	CCGG	1 cut(s)	1076
HphI	GGTGA	4 cut(s)	368, 496, 811, 952
Hpy166II	GTNNAC	3 cut(s)	194, 457, 532
Hpy188I	TCNGA	5 cut(s)	70, 371, 721, 855, 1095
Hpy8I	GTNNAC	3 cut(s)	194, 457, 532
HpyAV	CCTTC	3 cut(s)	65, 410, 476
HpyCH4III	ACNGT	6 cut(s)	168, 328, 380, 1036, 1048, 1121
HpyCH4V	TGCA	8 cut(s)	263, 278, 412, 512, 677, 766, 861, 987
HpyF10VI	GCNNNNNNNGC	3 cut(s)	421, 984, 1076
HpyF3I	CTNAG	4 cut(s)	42, 171, 589, 908
KpnI	GGTACC	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	1075
KroNI	GCCGGC	1 cut(s)	1077
Ksp22I	TGATCA	2 cut(s)	562, 598
Kzo9I	GATC	8 cut(s)	54, 435, 562, 598, 610, 634, 646, 850
LguI	GCTCTTC	2 cut(s)	90, 118
LmnI	GCTCC	2 cut(s)	622, 755
Lsp1109I	GCAGC	3 cut(s)	290, 424, 524
LweI	GCATC	5 cut(s)	70, 265, 825, 894, 996
MaeI	CTAG	4 cut(s)	30, 699, 968, 1089
MaeIII	GTNAC	2 cut(s)	102, 1147
MalI	GATC	8 cut(s)	56, 437, 564, 600, 612, 636, 648, 852
MboI	GATC	8 cut(s)	54, 435, 562, 598, 610, 634, 646, 850
MboII	GAAGA	6 cut(s)	77, 105, 121, 680, 698, 708
MflI	RGATCY	2 cut(s)	54, 435
MhlI	GDGCHC	2 cut(s)	400, 1088
MluCI	AATT	6 cut(s)	48, 231, 681, 732, 1098, 1107
MlyI	GAGTC	2 cut(s)	47, 189
MmeI	TCCRAC	1 cut(s)	1018
MroNI	GCCGGC	1 cut(s)	1075
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	2 cut(s)	536, 737
MslI	CAYNNNNRTG	5 cut(s)	329, 474, 545, 579, 929
MspI	CCGG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	3 cut(s)	421, 984, 1076
NaeI	GCCGGC	1 cut(s)	1077
NdeI	CATATG	1 cut(s)	821
NdeII	GATC	8 cut(s)	54, 435, 562, 598, 610, 634, 646, 850
NgoMIV	GCCGGC	1 cut(s)	1075
NlaIV	GGNNCC	1 cut(s)	21
NspI	RCATGY	2 cut(s)	770, 1022
PagI	TCATGA	2 cut(s)	559, 595
PceI	AGGCCT	1 cut(s)	978
PciI	ACATGT	1 cut(s)	1018
PciSI	GCTCTTC	2 cut(s)	90, 118
PdiI	GCCGGC	1 cut(s)	1077
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	5 cut(s)	155, 306, 462, 492, 784
PkrI	GCNGC	3 cut(s)	280, 414, 514
PleI	GAGTC	2 cut(s)	46, 189
PpsI	GAGTC	2 cut(s)	46, 189
PscI	ACATGT	1 cut(s)	1018
Psp124BI	GAGCTC	1 cut(s)	1088
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	2 cut(s)	54, 435
RsaI	GTAC	2 cut(s)	21, 267
RsaNI	GTAC	2 cut(s)	20, 266
RseI	CAYNNNNRTG	5 cut(s)	329, 474, 545, 579, 929
SacI	GAGCTC	1 cut(s)	1088
SapI	GCTCTTC	2 cut(s)	90, 118
SaqAI	TTAA	2 cut(s)	536, 737
SatI	GCNGC	3 cut(s)	279, 413, 513
Sau3AI	GATC	8 cut(s)	54, 435, 562, 598, 610, 634, 646, 850
Sau96I	GGNCC	1 cut(s)	7
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	2 cut(s)	47, 189
SduI	GDGCHC	2 cut(s)	400, 1088
SfaNI	GCATC	5 cut(s)	70, 265, 825, 894, 996
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	5 cut(s)	329, 474, 545, 579, 929
SmlI	CTYRAG	2 cut(s)	383, 980
SmoI	CTYRAG	2 cut(s)	383, 980
SpeI	ACTAGT	1 cut(s)	698
Sse9I	AATT	6 cut(s)	48, 231, 681, 732, 1098, 1107
SseBI	AGGCCT	1 cut(s)	978
SspMI	CTAG	4 cut(s)	30, 699, 968, 1089
SstI	GAGCTC	1 cut(s)	1088
StuI	AGGCCT	1 cut(s)	978
StyI	CCWWGG	1 cut(s)	751
TaaI	ACNGT	6 cut(s)	168, 328, 380, 1036, 1048, 1121
TaqI	TCGA	1 cut(s)	902
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	6 cut(s)	48, 231, 681, 732, 1098, 1107
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	5 cut(s)	155, 306, 462, 492, 784
Tru1I	TTAA	2 cut(s)	536, 737
Tru9I	TTAA	2 cut(s)	536, 737
TscAI	CASTG	2 cut(s)	298, 1086
TseI	GCWGC	3 cut(s)	278, 412, 512
TspDTI	ATGAA	1 cut(s)	492
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	298, 1086
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	732
XbaI	TCTAGA	1 cut(s)	967
XceI	RCATGY	2 cut(s)	770, 1022
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	4 cut(s)	30, 699, 968, 1089
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.