Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005860.1

Orthogroup ID

OG0011956

Physical Location & Seq

Genomic Coordinates Reverse (-)

3332 .. 5301

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005860.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggagcatgagaaggttcccttatctagaacagagtcccagcatgaaattgagatcccgatagtctctgaaattattgatcttctgcctgtgccacaaaagttaccttgctcttccatctgtggtttctccaggaaagaaagcagtaatttggattcaaaacaacgttcacaatcagcaactaaacttcgtgtactcataattgtctatatgttgtttatggttgttgaaattgttggtggtgtaaaatcgaacagcctggcagtactcacagatgcagcccacatgcttactgatgttagtggattcgctattgctctttttgcagtaatagcttcaggttgggaggcaacatcataccagtcttttggatatcaccgtcttgaggttttgagtgcgcttctatctgtgctgctgatatgggtggtcgctgcgatcttgatctatgaagcagtcaacagaatgcttcacaagcatgcaatggtcaatggggttctcatgtttgcagttgcagcatttggattttcggttaattttatcatggtcatgtggctcggaccaacgttgcaaaagaaaagcacacgttcaccaccaacatttgcaaagagaagatattgtaacttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0010035 GO:0010038 GO:0010043 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0032879 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0046915 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061088 GO:0065007 GO:0065008 GO:0070838 GO:0071577 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_efflux

Protein Analysis

208

Amino Acids

23.12

Weight (kDa)

9.03

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29410
fragaria_vesca	FvH4_3g37140 FvH4_3g37140 FvH4_3g37140
malus_domestica	MD03G1084800.v1.1
prunus_persica	Prupe.6G068100_v2.0.a1 Prupe.6G068100_v2.0.a1
pyrus_communis	pycom03g06700 pycom11g07760
rosa_chinensis	RchiOBHm_Chr5g0066861
rosa_laevigata	RLG00000035883
rosa_multiflora	Rmu_sc0005860.1_g000002
rosa_roxburghii	Rroxscaffold_1G00014260
rosa_rugosa	Rorug05G0379000
rosa_samantha	Rh5AG438700 Rh5BG455600 Rh5CG477700 Rh5DG470400
rosa_wichuraiana	Rw5G041020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	2 cut(s)	166, 563
AclWI	GGATC	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	195, 267
AfiI	CCNNNNNNNGG	1 cut(s)	385
AflIII	ACRYGT	1 cut(s)	581
AgsI	TTSAA	2 cut(s)	159, 230
AjnI	CCWGG	2 cut(s)	131, 258
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	49
ApeKI	GCWGC	4 cut(s)	278, 412, 431, 512
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	2 cut(s)	368, 579
AvaII	GGWCC	1 cut(s)	557
BbvI	GCAGC	4 cut(s)	290, 399, 418, 524
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	133, 260
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	4 cut(s)	279, 413, 432, 513
BlsI	GCNGC	4 cut(s)	280, 414, 433, 514
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	2 cut(s)	133, 260
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	133, 260
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	486
Bse8I	GATNNNNATC	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	133, 260
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	486
BseNI	ACTGG	1 cut(s)	361
BseXI	GCAGC	4 cut(s)	290, 399, 418, 524
BseYI	CCCAGC	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	54, 79, 435, 441
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	361
BssMI	GATC	4 cut(s)	54, 79, 435, 441
Bst2UI	CCWGG	2 cut(s)	133, 260
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	4 cut(s)	57, 82, 438, 444
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	4 cut(s)	54, 79, 435, 441
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
BstNI	CCWGG	2 cut(s)	133, 260
BstNSI	RCATGY	2 cut(s)	289, 479
BstSCI	CCNGG	2 cut(s)	131, 258
BstV1I	GCAGC	4 cut(s)	290, 399, 418, 524
BstX2I	RGATCY	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	557
Csp6I	GTAC	2 cut(s)	194, 266
CviAII	CATG	7 cut(s)	8, 44, 286, 476, 499, 541, 547
CviJI	RGCY	4 cut(s)	258, 281, 335, 553
CviKI_1	RGCY	4 cut(s)	258, 281, 335, 553
CviQI	GTAC	2 cut(s)	194, 266
DpnI	GATC	4 cut(s)	56, 81, 437, 443
DpnII	GATC	4 cut(s)	54, 79, 435, 441
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	2 cut(s)	131, 258
EcoRV	GATATC	1 cut(s)	374
FaeI	CATG	7 cut(s)	11, 47, 289, 479, 502, 544, 550
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	7 cut(s)	7, 43, 285, 475, 498, 540, 546
Fnu4HI	GCNGC	4 cut(s)	279, 413, 432, 513
Fsp4HI	GCNGC	4 cut(s)	279, 413, 432, 513
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	4 cut(s)	279, 413, 432, 513
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	115
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	7 cut(s)	11, 47, 289, 479, 502, 544, 550
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	3 cut(s)	35, 155, 306
HphI	GGTGA	2 cut(s)	368, 579
Hpy166II	GTNNAC	4 cut(s)	170, 194, 457, 587
Hpy188I	TCNGA	2 cut(s)	70, 557
Hpy188III	TCNNGA	4 cut(s)	27, 58, 383, 439
Hpy8I	GTNNAC	4 cut(s)	170, 194, 457, 587
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	3 cut(s)	166, 563, 583
HpyCH4V	TGCA	7 cut(s)	278, 326, 479, 506, 512, 568, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
HpySE526I	ACGT	3 cut(s)	166, 563, 583
Hsp92II	CATG	7 cut(s)	11, 47, 289, 479, 502, 544, 550
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	4 cut(s)	54, 79, 435, 441
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	53, 102, 118, 145, 245, 272, 324, 374
Lsp1109I	GCAGC	4 cut(s)	290, 399, 418, 524
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	3 cut(s)	166, 563, 583
MaeIII	GTNAC	2 cut(s)	102, 617
MalI	GATC	4 cut(s)	56, 81, 437, 443
MboI	GATC	4 cut(s)	54, 79, 435, 441
MboII	GAAGA	3 cut(s)	74, 105, 621
MflI	RGATCY	1 cut(s)	54
MluCI	AATT	6 cut(s)	48, 72, 148, 201, 231, 532
MlyI	GAGTC	1 cut(s)	44
MnlI	CCTC	2 cut(s)	340, 379
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	2 cut(s)	474, 545
MspR9I	CCNGG	2 cut(s)	133, 260
Mva1269I	GAATGC	1 cut(s)	468
MvaI	CCWGG	2 cut(s)	133, 260
MwoI	GCNNNNNNNGC	4 cut(s)	323, 332, 472, 512
NdeII	GATC	4 cut(s)	54, 79, 435, 441
NlaIII	CATG	7 cut(s)	11, 47, 289, 479, 502, 544, 550
NlaIV	GGNNCC	1 cut(s)	18
NspI	RCATGY	2 cut(s)	289, 479
PaeI	GCATGC	1 cut(s)	479
PciSI	GCTCTTC	1 cut(s)	118
PctI	GAATGC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	155, 306
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	4 cut(s)	280, 414, 433, 514
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp1406I	AACGTT	2 cut(s)	166, 563
Psp6I	CCWGG	2 cut(s)	131, 258
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	2 cut(s)	131, 258
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	2 cut(s)	195, 267
RsaNI	GTAC	2 cut(s)	194, 266
RseI	CAYNNNNRTG	2 cut(s)	474, 545
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	4 cut(s)	279, 413, 432, 513
Sau3AI	GATC	4 cut(s)	54, 79, 435, 441
Sau96I	GGNCC	1 cut(s)	557
ScaI	AGTACT	1 cut(s)	267
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	2 cut(s)	133, 260
SetI	ASST	8 cut(s)	18, 109, 169, 337, 343, 390, 566, 586
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	2 cut(s)	474, 545
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	6 cut(s)	48, 72, 148, 201, 231, 532
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	131, 258
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	3 cut(s)	169, 566, 586
TaqI	TCGA	1 cut(s)	251
TasI	AATT	6 cut(s)	48, 72, 148, 201, 231, 532
TatI	WGTACW	2 cut(s)	193, 265
TfiI	GAWTC	2 cut(s)	155, 306
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TseI	GCWGC	4 cut(s)	278, 412, 431, 512
TspDTI	ATGAA	2 cut(s)	60, 462
VpaK11BI	GGWCC	1 cut(s)	557
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	2 cut(s)	289, 479
XspI	CTAG	1 cut(s)	27
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.