Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005749

Physical Location & Seq

Genomic Coordinates Reverse (-)

13077534 .. 13081474

Gene Structure 3941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30695.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCAGACAATCATCCACAGTCTCTCGTTTTGTAGCTTTAACTCTACAACAATTAATCCAAAACCCAGATTTCAATTTTCTTCGTTTTTAACTCTTCCTCCAACTTATTCAGTGCAACAGAAACTCTGTACAAGAGCAACGAATAGACAGTTTGTCGCGGTTTGTGCTGCACCATCAGATGTAGAGACTTCTTCCAAGGATGAATCTGTTTTGATTACGAAAGTGGAGACTGAAACCAGCAATGAGGTTAAGGTGCATGTACAAGTGTCAGGAGAGAAGACTCAAACTGTATTCAATCATGTTTTTGAGAAAATGGTTGCTGCAGCTCAGCCAATCCCGGGGTTCCGAAGAGTTAAAGGAGGAAAGACCCCAAATATACCCAAAGATGTTTTGTTAGAGATCCTTGGATATTCTAAAGTCTATAAGCAGGTGATAAAGAAATTAATCAATTCTGCTATCGAAGACTATGTTAAACAGGAAGACCTTAAGGTTGGCAAAGAGTTGACTGTTGTGCAAAGCTATGAAGATCTTGAAGAAACATTTGAACCAGGTGAAAGTTTCAGCTTTGATGCTACTATAAAGCTTCAAGAAGCGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trigger_N

Protein Analysis

199

Amino Acids

22.26

Weight (kDa)

6.33

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30695 AT2G30695 AT2G30695 AT2G30695
fragaria_vesca	FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770
malus_domestica	MD04G1048700.v1.1
prunus_persica	Prupe.1G206000_v2.0.a1
pyrus_communis	pycom04g04280
rosa_chinensis	RchiOBHm_Chr5g0044351
rosa_multiflora	Rmu_sc0004741.1_g000016
rosa_roxburghii	Rroxscaffold_1G00036610
rosa_rugosa	Rorug02G0236800 Rorug05G0213700
rosa_samantha	Rh5AG297800 Rh5BG305200 Rh5CG332200 Rh5DG314400
rosa_wichuraiana	Rw5G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	418
Acc36I	ACCTGC	1 cut(s)	418
AccII	CGCG	1 cut(s)	158
AciI	CCGC	1 cut(s)	158
AclWI	GGATC	1 cut(s)	394
AfaI	GTAC	2 cut(s)	130, 261
AfiI	CCNNNNNNNGG	1 cut(s)	338
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	5 cut(s)	74, 295, 533, 545, 587
AhdI	GACNNNNNGTC	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	5 cut(s)	36, 326, 519, 564, 583
AluI	AGCT	5 cut(s)	36, 326, 519, 564, 583
Alw26I	GTCTC	3 cut(s)	26, 179, 221
AlwI	GGATC	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	337
ApeKI	GCWGC	3 cut(s)	167, 320, 323
AseI	ATTAAT	2 cut(s)	54, 443
AsuC2I	CCSGG	2 cut(s)	338, 339
AsuHPI	GGTGA	2 cut(s)	442, 563
AvaI	CYCGRG	1 cut(s)	337
BbsI	GAAGAC	3 cut(s)	284, 468, 486
BbvI	GCAGC	3 cut(s)	154, 307, 335
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	549
BcnI	CCSGG	2 cut(s)	338, 339
BcoDI	GTCTC	3 cut(s)	26, 179, 221
BfmI	CTRYAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	418
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	3 cut(s)	168, 321, 324
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	3 cut(s)	169, 322, 325
Bme1390I	CCNGG	3 cut(s)	338, 339, 549
BmeRI	GACNNNNNGTC	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	3 cut(s)	338, 339, 549
BmsI	GCATC	1 cut(s)	559
BpiI	GAAGAC	3 cut(s)	284, 468, 486
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuMI	CCSGG	2 cut(s)	338, 339
BsaJI	CCNNGG	4 cut(s)	195, 337, 338, 403
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	4 cut(s)	195, 337, 338, 403
BseGI	GGATG	2 cut(s)	12, 205
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	341
BseXI	GCAGC	3 cut(s)	154, 307, 335
BsgI	GTGCAG	1 cut(s)	153
Bsh1236I	CGCG	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	3 cut(s)	26, 179, 221
BsoBI	CYCGRG	1 cut(s)	337
Bsp1407I	TGTACA	2 cut(s)	128, 259
Bsp143I	GATC	2 cut(s)	399, 526
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	344
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	394
BspTI	CTTAAG	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	247
BsrGI	TGTACA	2 cut(s)	128, 259
BssECI	CCNNGG	4 cut(s)	195, 337, 338, 403
BssMI	GATC	2 cut(s)	399, 526
BssT1I	CCWWGG	2 cut(s)	195, 403
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	4 cut(s)	20, 150, 289, 508
Bst6I	CTCTTC	2 cut(s)	99, 343
BstAFI	CTTAAG	1 cut(s)	485
BstAUI	TGTACA	2 cut(s)	128, 259
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	12, 205
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	2 cut(s)	402, 529
BstMAI	GTCTC	3 cut(s)	26, 179, 221
BstMBI	GATC	2 cut(s)	399, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	1 cut(s)	260
BstSCI	CCNGG	3 cut(s)	336, 337, 547
BstSFI	CTRYAG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	154, 307, 335
BstV2I	GAAGAC	3 cut(s)	284, 468, 486
BstX2I	RGATCY	2 cut(s)	399, 526
BstYI	RGATCY	2 cut(s)	399, 526
BtsCI	GGATG	2 cut(s)	12, 205
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	418
Cfr9I	CCCGGG	1 cut(s)	337
CsiI	ACCWGGT	1 cut(s)	547
Csp6I	GTAC	2 cut(s)	129, 260
CviAII	CATG	2 cut(s)	257, 299
CviJI	RGCY	6 cut(s)	36, 326, 331, 519, 564, 583
CviKI_1	RGCY	6 cut(s)	36, 326, 331, 519, 564, 583
CviQI	GTAC	2 cut(s)	129, 260
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	401, 528
DpnII	GATC	2 cut(s)	399, 526
DriI	GACNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	2 cut(s)	99, 343
Eam1105I	GACNNNNNGTC	1 cut(s)	152
EarI	CTCTTC	2 cut(s)	99, 343
Eco130I	CCWWGG	2 cut(s)	195, 403
Eco88I	CYCGRG	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	2 cut(s)	195, 403
ErhI	CCWWGG	2 cut(s)	195, 403
FaeI	CATG	2 cut(s)	260, 302
FaiI	YATR	7 cut(s)	258, 300, 377, 423, 468, 522, 578
FatI	CATG	2 cut(s)	256, 298
Fnu4HI	GCNGC	3 cut(s)	168, 321, 324
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	168, 321, 324
GluI	GCNGC	3 cut(s)	168, 321, 324
HapII	CCGG	1 cut(s)	338
Hin1II	CATG	2 cut(s)	260, 302
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	2 cut(s)	203, 280
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	2 cut(s)	442, 563
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	2 cut(s)	178, 347
Hpy188III	TCNNGA	3 cut(s)	270, 530, 587
Hpy8I	GTNNAC	1 cut(s)	504
HpyCH4III	ACNGT	4 cut(s)	20, 150, 289, 508
HpyCH4V	TGCA	6 cut(s)	4, 115, 170, 256, 323, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	260, 302
Kzo9I	GATC	2 cut(s)	399, 526
LpnPI	CCDG	8 cut(s)	79, 250, 255, 351, 413, 461, 534, 561
Lsp1109I	GCAGC	3 cut(s)	154, 307, 335
LweI	GCATC	1 cut(s)	559
MabI	ACCWGGT	1 cut(s)	547
MalI	GATC	2 cut(s)	401, 528
MboI	GATC	2 cut(s)	399, 526
MboII	GAAGA	9 cut(s)	72, 86, 183, 289, 360, 473, 491, 536, 545
MflI	RGATCY	2 cut(s)	399, 526
MluCI	AATT	4 cut(s)	51, 74, 440, 448
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	3 cut(s)	108, 238, 353
MseI	TTAA	8 cut(s)	39, 54, 89, 249, 354, 443, 471, 486
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	3 cut(s)	338, 339, 549
MvaI	CCWGG	1 cut(s)	549
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	2 cut(s)	338, 339
NdeII	GATC	2 cut(s)	399, 526
NlaIII	CATG	2 cut(s)	260, 302
NlaIV	GGNNCC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	260
PaqCI	CACCTGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	169, 322, 325
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PshBI	ATTAAT	2 cut(s)	54, 443
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	399, 526
RsaI	GTAC	2 cut(s)	130, 261
RsaNI	GTAC	2 cut(s)	129, 260
SaqAI	TTAA	8 cut(s)	39, 54, 89, 249, 354, 443, 471, 486
SatI	GCNGC	3 cut(s)	168, 321, 324
Sau3AI	GATC	2 cut(s)	399, 526
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	3 cut(s)	338, 339, 549
SexAI	ACCWGGT	1 cut(s)	547
SfaNI	GCATC	1 cut(s)	559
SfcI	CTRYAG	1 cut(s)	321
SmaI	CCCGGG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	4 cut(s)	51, 74, 440, 448
SsiI	CCGC	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	336, 337, 547
StyI	CCWWGG	2 cut(s)	195, 403
TaaI	ACNGT	4 cut(s)	20, 150, 289, 508
TaqI	TCGA	1 cut(s)	459
TasI	AATT	4 cut(s)	51, 74, 440, 448
TatI	WGTACW	2 cut(s)	128, 259
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	8 cut(s)	39, 54, 89, 249, 354, 443, 471, 486
Tru9I	TTAA	8 cut(s)	39, 54, 89, 249, 354, 443, 471, 486
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	3 cut(s)	167, 320, 323
TspDTI	ATGAA	2 cut(s)	216, 537
TspMI	CCCGGG	1 cut(s)	337
TspRI	CASTG	1 cut(s)	117
Vha464I	CTTAAG	1 cut(s)	485
VspI	ATTAAT	2 cut(s)	54, 443
XceI	RCATGY	1 cut(s)	260
XmaI	CCCGGG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.