Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005749

Physical Location & Seq

Genomic Coordinates Reverse (-)

3821834 .. 3824927

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04280.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAAATAGCCGTTAATTTCAGCCTCCCCTTCTCGAGTTTAAATTCTAAGGTAATTAGGCACGATCAGAAAATTGGTGGCTCTTTTCCAAGCCTTACTTGCACAAGGGCAAAATCCTCCAATCACATCACATATGCTGCTCAAGCATTTTCCAGAAGGAAAAGTCACAAGTATTTTCCTCCAATTTGTGCTGCATTATCAGGCACAGAAGACATTGGAGTATCTTCATCTCAGATTGACGACTTGCCTGTTACTGTTACTACTTCAGGTGCCAATGATGCTGGTGAACTGAAGATAAACGTTGAGGCATCTGGTGCTAAAACTCAAGCAATTTTCGACGAAGTTTTTAATAAAATGGTTACCGCAGCCCAACCGATACCTGGATTCCGAAGAGTGAAAGGAGGCAAAACACCCAATATACCTAAAGACATTTTACTAGAAGTCCTTGGACCTTCGAAAGTTTATAAGCAAGTAATCAAGAAAGTGATCAATTCGACGGTAGCTGAATATGTAGAGAAGGAAGGTTTAGAGGTTAGAAAGGACTTGAGAGTGGAGCAAAGCTTTGAAGATCTTGAAGATGCTTTCGAAGCAGGTGAAAACTTCCGCTTTGACGCCGTCATTTATCTTCGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trigger_N

Protein Analysis

212

Amino Acids

23.19

Weight (kDa)

8.44

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30695 AT2G30695 AT2G30695 AT2G30695
fragaria_vesca	FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770
malus_domestica	MD04G1048700.v1.1
prunus_persica	Prupe.1G206000_v2.0.a1
pyrus_communis	pycom04g04280
rosa_chinensis	RchiOBHm_Chr5g0044351
rosa_multiflora	Rmu_sc0004741.1_g000016
rosa_roxburghii	Rroxscaffold_1G00036610
rosa_rugosa	Rorug02G0236800 Rorug05G0213700
rosa_samantha	Rh5AG297800 Rh5BG305200 Rh5CG332200 Rh5DG314400
rosa_wichuraiana	Rw5G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AarI	CACCTGC	1 cut(s)	581
Acc36I	ACCTGC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	269
AciI	CCGC	2 cut(s)	363, 604
AclI	AACGTT	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	2 cut(s)	249, 311
AcyI	GRCGYC	1 cut(s)	612
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	566, 575
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	2 cut(s)	503, 561
AluI	AGCT	2 cut(s)	503, 561
Ama87I	CYCGRG	1 cut(s)	34
ApeKI	GCWGC	3 cut(s)	137, 191, 365
ApoI	RAATTY	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	296, 605
AsuII	TTCGAA	2 cut(s)	455, 585
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	124, 178, 377
BceAI	ACGGC	1 cut(s)	599
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	486
BfaI	CTAG	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	3 cut(s)	138, 192, 366
BlsI	GCNGC	3 cut(s)	139, 193, 367
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	3 cut(s)	268, 317, 568
BpiI	GAAGAC	1 cut(s)	216
Bpu14I	TTCGAA	2 cut(s)	455, 585
BpuEI	CTTGAG	3 cut(s)	126, 309, 565
BsaHI	GRCGYC	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	124, 178, 377
BshNI	GGYRCC	1 cut(s)	269
BsiHKCI	CYCGRG	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	380
BsoBI	CYCGRG	1 cut(s)	34
Bsp119I	TTCGAA	2 cut(s)	455, 585
Bsp143I	GATC	3 cut(s)	64, 486, 568
BspACI	CCGC	2 cut(s)	363, 604
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	581
BspT104I	TTCGAA	2 cut(s)	455, 585
BspT107I	GGYRCC	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	3 cut(s)	64, 486, 568
BssNI	GRCGYC	1 cut(s)	612
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	256, 499
Bst6I	CTCTTC	1 cut(s)	385
BstACI	GRCGYC	1 cut(s)	612
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBI	TTCGAA	2 cut(s)	455, 585
BstDEI	CTNAG	2 cut(s)	48, 231
BstEII	GGTNACC	1 cut(s)	358
BstKTI	GATC	3 cut(s)	67, 489, 571
BstMBI	GATC	3 cut(s)	64, 486, 568
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 143, 278, 314, 587
BstNI	CCWGG	1 cut(s)	381
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	1 cut(s)	379
BstV1I	GCAGC	3 cut(s)	124, 178, 377
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BveI	ACCTGC	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	449
CseI	GACGC	1 cut(s)	620
CviJI	RGCY	7 cut(s)	11, 24, 81, 93, 368, 503, 561
CviKI_1	RGCY	7 cut(s)	11, 24, 81, 93, 368, 503, 561
DdeI	CTNAG	2 cut(s)	48, 231
DpnI	GATC	3 cut(s)	66, 488, 570
DpnII	GATC	3 cut(s)	64, 486, 568
DraI	TTTAAA	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	385
EarI	CTCTTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	249, 311
Eco88I	CYCGRG	1 cut(s)	34
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	445
FaiI	YATR	5 cut(s)	133, 135, 419, 465, 510
FalI	AAGNNNNNCTT	2 cut(s)	82, 114
FauNDI	CATATG	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	138, 192, 366
Fsp4HI	GCNGC	3 cut(s)	138, 192, 366
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	3 cut(s)	138, 192, 366
HgaI	GACGC	1 cut(s)	620
Hin1I	GRCGYC	1 cut(s)	612
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	1 cut(s)	384
HphI	GGTGA	2 cut(s)	296, 605
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	3 cut(s)	69, 234, 389
Hpy188III	TCNNGA	4 cut(s)	34, 153, 478, 572
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	2 cut(s)	341, 499
HpyAV	CCTTC	5 cut(s)	40, 150, 462, 511, 515
HpyCH4III	ACNGT	2 cut(s)	256, 499
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	2 cut(s)	102, 194
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 143, 278, 314, 587
HpyF3I	CTNAG	2 cut(s)	48, 231
HpySE526I	ACGT	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	612
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	64, 486, 568
LmnI	GCTCC	1 cut(s)	553
LpnPI	CCDG	9 cut(s)	166, 186, 252, 261, 267, 297, 366, 393, 576
Lsp1109I	GCAGC	3 cut(s)	124, 178, 377
LweI	GCATC	3 cut(s)	268, 317, 568
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	4 cut(s)	164, 250, 256, 358
MalI	GATC	3 cut(s)	66, 488, 570
MboI	GATC	3 cut(s)	64, 486, 568
MboII	GAAGA	7 cut(s)	216, 221, 304, 402, 578, 587, 617
MflI	RGATCY	1 cut(s)	568
MluCI	AATT	7 cut(s)	16, 43, 54, 72, 183, 330, 490
MnlI	CCTC	6 cut(s)	35, 127, 189, 298, 395, 523
MseI	TTAA	3 cut(s)	15, 41, 348
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	5 cut(s)	99, 143, 278, 314, 587
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	3 cut(s)	64, 486, 568
NlaIV	GGNNCC	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	164
NspV	TTCGAA	2 cut(s)	455, 585
PaeR7I	CTCGAG	1 cut(s)	34
PaqCI	CACCTGC	1 cut(s)	581
PfeI	GAWTC	1 cut(s)	384
PflFI	GACNNNGTC	1 cut(s)	614
PkrI	GCNGC	3 cut(s)	139, 193, 367
PsiI	TTATAA	1 cut(s)	465
Psp1406I	AACGTT	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	379
PspEI	GGTNACC	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	568
PsyI	GACNNNGTC	1 cut(s)	614
SaqAI	TTAA	3 cut(s)	15, 41, 348
SatI	GCNGC	3 cut(s)	138, 192, 366
Sau3AI	GATC	3 cut(s)	64, 486, 568
Sau96I	GGNCC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	381
SfaNI	GCATC	3 cut(s)	268, 317, 568
Sfr274I	CTCGAG	1 cut(s)	34
SfuI	TTCGAA	2 cut(s)	455, 585
SinI	GGWCC	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	4 cut(s)	34, 141, 324, 544
SmoI	CTYRAG	4 cut(s)	34, 141, 324, 544
Sse9I	AATT	7 cut(s)	16, 43, 54, 72, 183, 330, 490
SsiI	CCGC	2 cut(s)	363, 604
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	2 cut(s)	256, 499
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	5 cut(s)	35, 336, 455, 494, 585
TasI	AATT	7 cut(s)	16, 43, 54, 72, 183, 330, 490
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	3 cut(s)	15, 41, 348
Tru9I	TTAA	3 cut(s)	15, 41, 348
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	3 cut(s)	137, 191, 365
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	216
Tth111I	GACNNNGTC	1 cut(s)	614
VpaK11BI	GGWCC	1 cut(s)	449
XapI	RAATTY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.