Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004741.1

Orthogroup ID

OG0005749

Physical Location & Seq

Genomic Coordinates Forward (+)

65364 .. 70063

Gene Structure 4700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004741.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgtccacactgacgacgacagtttcttcacagttcccctcccttcaattacccaagcagttttctgtaagaagctactgcacttacgtccttgcttgtcaaaatgctacaagacttgggttctctaccacaccccatcatctgtttactgggagaagtctcaagtatcttcctgctatctgtgctgtattgtcaggcacagaagacattggagtatcctctactcaatctgaagacttgtctattacttctactacttcaggtaccgatgctggagaatttaagataagcgtagaggtatctggggccaaaactcaagcaatattcgatgacgtttttgacaaaatggttgctgcagcccagccaatacccggatttcgaagagtgaaaggagcagcactcctgcctgctgggtggagttatgacactgatcttgcttattgcatacacatgcaaaggatacctagagatgttttggtcgaagtccttggaccgtcgaaagtatataagcaagtaatcaagaaagtgatcaactctacagtagctgaatatgtagagaaggaatgtttaaaagtcagcaaggacttgagagtggagcaaagctttgaagatcttgaagcctcttttgaacccggtgaagaattcagctttgatgctgtagttcaacttctaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trigger_N

Protein Analysis

225

Amino Acids

24.65

Weight (kDa)

5.46

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30695 AT2G30695 AT2G30695 AT2G30695
fragaria_vesca	FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770
malus_domestica	MD04G1048700.v1.1
prunus_persica	Prupe.1G206000_v2.0.a1
pyrus_communis	pycom04g04280
rosa_chinensis	RchiOBHm_Chr5g0044351
rosa_multiflora	Rmu_sc0004741.1_g000016
rosa_roxburghii	Rroxscaffold_1G00036610
rosa_rugosa	Rorug02G0236800 Rorug05G0213700
rosa_samantha	Rh5AG297800 Rh5BG305200 Rh5CG332200 Rh5DG314400
rosa_wichuraiana	Rw5G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	263
AcsI	RAATTY	2 cut(s)	278, 641
AcuI	CTGAAG	2 cut(s)	243, 252
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	47, 608, 617, 629, 665
AluBI	AGCT	4 cut(s)	75, 545, 603, 648
AluI	AGCT	4 cut(s)	75, 545, 603, 648
Alw26I	GTCTC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	3 cut(s)	353, 356, 395
ApoI	RAATTY	2 cut(s)	278, 641
Asp718I	GGTACC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	306, 491
AsuC2I	CCSGG	2 cut(s)	372, 633
AsuHPI	GGTGA	1 cut(s)	647
AsuII	TTCGAA	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	263
BarI	GAAGNNNNNNTAC	1 cut(s)	651
BbsI	GAAGAC	2 cut(s)	210, 240
BbvI	GCAGC	3 cut(s)	340, 368, 407
BccI	CCATC	1 cut(s)	144
BciVI	GTATCC	2 cut(s)	226, 453
BclI	TGATCA	1 cut(s)	528
BcnI	CCSGG	2 cut(s)	372, 633
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	3 cut(s)	354, 537, 657
BfuI	GTATCC	2 cut(s)	226, 453
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	3 cut(s)	354, 357, 396
BlsI	GCNGC	3 cut(s)	355, 358, 397
Bme1390I	CCNGG	2 cut(s)	372, 633
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	2 cut(s)	306, 491
BmiI	GGNNCC	2 cut(s)	265, 307
BmrFI	CCNGG	2 cut(s)	372, 633
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	2 cut(s)	259, 643
BmuI	ACTGGG	1 cut(s)	159
BpiI	GAAGAC	2 cut(s)	210, 240
BplI	GAGNNNNNCTC	2 cut(s)	384, 416
BpmI	CTGGAG	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	379
BpuEI	CTTGAG	3 cut(s)	146, 300, 607
BpuMI	CCSGG	2 cut(s)	372, 633
BsaJI	CCNNGG	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	487
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	154
BseXI	GCAGC	3 cut(s)	340, 368, 407
BseYI	CCCAGC	2 cut(s)	360, 410
BsgI	GTGCAG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	308
BshNI	GGYRCC	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	372, 633
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	430, 528, 610
BspANI	GGCC	1 cut(s)	308
BspLI	GGNNCC	2 cut(s)	265, 307
BspMAI	CTGCAG	1 cut(s)	358
BspT104I	TTCGAA	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	487
BssMI	GATC	3 cut(s)	430, 528, 610
BssT1I	CCWWGG	1 cut(s)	487
Bst4CI	ACNGT	4 cut(s)	22, 33, 495, 541
Bst6I	CTCTTC	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	408
BstKTI	GATC	3 cut(s)	433, 531, 613
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	430, 528, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	2 cut(s)	370, 631
BstSFI	CTRYAG	3 cut(s)	354, 537, 657
BstV1I	GCAGC	3 cut(s)	340, 368, 407
BstV2I	GAAGAC	2 cut(s)	210, 240
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BsuI	GTATCC	2 cut(s)	226, 453
BsuRI	GGCC	1 cut(s)	308
BtsIMutI	CAGTG	2 cut(s)	8, 426
Cac8I	GCNNGC	1 cut(s)	408
CaiI	CAGNNNCTG	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	306, 491
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	1 cut(s)	451
CviJI	RGCY	8 cut(s)	75, 308, 359, 364, 545, 603, 620, 648
CviKI_1	RGCY	8 cut(s)	75, 308, 359, 364, 545, 603, 620, 648
CviQI	GTAC	1 cut(s)	264
DpnI	GATC	3 cut(s)	432, 530, 612
DpnII	GATC	3 cut(s)	430, 528, 610
DraI	TTTAAA	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	2 cut(s)	243, 252
EcoRI	GAATTC	1 cut(s)	641
EcoT14I	CCWWGG	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	1 cut(s)	454
FaiI	YATR	6 cut(s)	423, 446, 452, 505, 507, 552
FatI	CATG	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	528
Fnu4HI	GCNGC	3 cut(s)	354, 357, 396
Fsp4HI	GCNGC	3 cut(s)	354, 357, 396
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	3 cut(s)	354, 357, 396
GsaI	CCCAGC	2 cut(s)	364, 414
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	2 cut(s)	372, 633
Hin1II	CATG	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	601
HpaII	CCGG	2 cut(s)	372, 633
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	2 cut(s)	6, 147
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	520, 614
Hpy8I	GTNNAC	2 cut(s)	6, 147
Hpy99I	CGWCG	2 cut(s)	19, 499
HpyAV	CCTTC	2 cut(s)	53, 553
HpyCH4III	ACNGT	4 cut(s)	22, 33, 495, 541
HpyCH4IV	ACGT	2 cut(s)	87, 333
HpyCH4V	TGCA	4 cut(s)	81, 356, 444, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpySE526I	ACGT	2 cut(s)	87, 333
Hsp92II	CATG	1 cut(s)	454
KpnI	GGTACC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	528
Kzo9I	GATC	3 cut(s)	430, 528, 610
LmnI	GCTCC	2 cut(s)	392, 595
Lsp1109I	GCAGC	3 cut(s)	340, 368, 407
LweI	GCATC	2 cut(s)	259, 643
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	2 cut(s)	87, 333
MalI	GATC	3 cut(s)	432, 530, 612
MboI	GATC	3 cut(s)	430, 528, 610
MboII	GAAGA	7 cut(s)	18, 161, 215, 245, 393, 620, 650
MflI	RGATCY	1 cut(s)	610
MluCI	AATT	3 cut(s)	47, 278, 641
MnlI	CCTC	4 cut(s)	49, 229, 289, 631
MseI	TTAA	2 cut(s)	282, 569
MslI	CAYNNNNRTG	1 cut(s)	449
MspI	CCGG	2 cut(s)	372, 633
MspR9I	CCNGG	2 cut(s)	372, 633
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	2 cut(s)	372, 633
NdeII	GATC	3 cut(s)	430, 528, 610
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	2 cut(s)	265, 307
NspI	RCATGY	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	355, 358, 397
PspFI	CCCAGC	2 cut(s)	360, 410
PspN4I	GGNNCC	2 cut(s)	265, 307
PspPI	GGNCC	2 cut(s)	306, 491
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	2 cut(s)	282, 569
SatI	GCNGC	3 cut(s)	354, 357, 396
Sau3AI	GATC	3 cut(s)	430, 528, 610
Sau96I	GGNCC	2 cut(s)	306, 491
ScrFI	CCNGG	2 cut(s)	372, 633
SetI	ASST	9 cut(s)	77, 90, 265, 300, 336, 466, 547, 605, 650
SfaNI	GCATC	2 cut(s)	259, 643
SfcI	CTRYAG	3 cut(s)	354, 537, 657
SfuI	TTCGAA	1 cut(s)	379
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	3 cut(s)	161, 315, 586
SmoI	CTYRAG	3 cut(s)	161, 315, 586
Sse9I	AATT	3 cut(s)	47, 278, 641
SspI	AATATT	1 cut(s)	324
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	370, 631
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	4 cut(s)	22, 33, 495, 541
TaiI	ACGT	2 cut(s)	90, 336
TaqI	TCGA	4 cut(s)	327, 379, 480, 497
TasI	AATT	3 cut(s)	47, 278, 641
Tru1I	TTAA	2 cut(s)	282, 569
Tru9I	TTAA	2 cut(s)	282, 569
TscAI	CASTG	2 cut(s)	15, 433
TseI	GCWGC	3 cut(s)	353, 356, 395
TspRI	CASTG	2 cut(s)	15, 433
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	2 cut(s)	278, 641
XceI	RCATGY	1 cut(s)	454
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.