Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005749

Physical Location & Seq

Genomic Coordinates Reverse (-)

20808222 .. 20813397

Gene Structure 5176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G206000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAAATAGCCGTTAATTGTTCCCTCTTCTCGGGTTTAAATCCTAAGATAATTAGTAGCAATCGGAGGATCAGTGCCTCTATTCCAAGCCTTGGTTGCTGGAGAACAAAATCCTCCCATCAAATCACATATTCTGCTCTAGCACTTTGCAGAAGGGAAAGTAATAAGTATATTCCTGCAATTTGTGCTGTGTTATCAGGCACAGAAGACATTGGAGTATCTTCTTCTGGGTTTGAAGATGTTCCTGTTACAGTTACTACTTCAGGTACCAGTGATGCCGGTGAACTAAAGATAAACGTAGAGGTATCGGGTGCTAAAACTCGAGCAATTTTTGACGAAGTTTTTGACAAAATGGTTACTGCAGCCCAACCAATACCTGGATTTCGAAGAGTGAAAGGAGGGAAAACACCCAATATACCTAGAGACATTTTGCTAGAAGTCCTTGGACCGTCTAAAGTTTATAAGCAAGTAATCAAGAAAGTGATCAATTCTGCGATAGCTGAATATGTAGAGAAGGAAGGTTTAAAAGTTAGAAAGGACTTGAGAGTGGAGCAAAGCTTTGAAGATCTTGAAGTTGCTTTTGAACCAGGTGAAGATTTCAGCTTTGATGCTGTCATTCATCTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trigger_N

Protein Analysis

210

Amino Acids

22.76

Weight (kDa)

6.75

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30695 AT2G30695 AT2G30695 AT2G30695
fragaria_vesca	FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770
malus_domestica	MD04G1048700.v1.1
prunus_persica	Prupe.1G206000_v2.0.a1
pyrus_communis	pycom04g04280
rosa_chinensis	RchiOBHm_Chr5g0044351
rosa_multiflora	Rmu_sc0004741.1_g000016
rosa_roxburghii	Rroxscaffold_1G00036610
rosa_rugosa	Rorug02G0236800 Rorug05G0213700
rosa_samantha	Rh5AG297800 Rh5BG305200 Rh5CG332200 Rh5DG314400
rosa_wichuraiana	Rw5G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	266
AccB7I	CCANNNNNTGG	2 cut(s)	92, 377
AclWI	GGATC	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	268
AfiI	CCNNNNNNNGG	3 cut(s)	31, 92, 377
AgsI	TTSAA	4 cut(s)	236, 563, 572, 584
AjnI	CCWGG	2 cut(s)	376, 586
AluBI	AGCT	3 cut(s)	500, 558, 603
AluI	AGCT	3 cut(s)	500, 558, 603
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	77
Ama87I	CYCGRG	2 cut(s)	31, 321
ApeKI	GCWGC	1 cut(s)	362
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
Asp700I	GAANNNNTTC	1 cut(s)	240
Asp718I	GGTACC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	2 cut(s)	293, 602
AsuII	TTCGAA	1 cut(s)	385
AvaI	CYCGRG	2 cut(s)	31, 321
AvaII	GGWCC	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	1 cut(s)	126
BciT130I	CCWGG	2 cut(s)	378, 588
BclI	TGATCA	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	4 cut(s)	140, 420, 434, 628
BfmI	CTRYAG	1 cut(s)	360
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	2 cut(s)	378, 588
Bme18I	GGWCC	1 cut(s)	446
BmeT110I	CYCGRG	2 cut(s)	31, 321
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	378, 588
BmsI	GCATC	2 cut(s)	265, 598
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	385
BpuEI	CTTGAG	1 cut(s)	562
BsaJI	CCNNGG	2 cut(s)	91, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 92, 377
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	270
BseBI	CCWGG	2 cut(s)	378, 588
BseDI	CCNNGG	2 cut(s)	91, 442
BseLI	CCNNNNNNNGG	3 cut(s)	31, 92, 377
BseNI	ACTGG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	374
BshNI	GGYRCC	1 cut(s)	266
BsiHKCI	CYCGRG	2 cut(s)	31, 321
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	3 cut(s)	31, 92, 377
BsmAI	GTCTC	1 cut(s)	417
BsoBI	CYCGRG	2 cut(s)	31, 321
Bsp119I	TTCGAA	1 cut(s)	385
Bsp143I	GATC	3 cut(s)	69, 483, 565
BspLI	GGNNCC	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	1 cut(s)	77
BspT104I	TTCGAA	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	91, 442
BssMI	GATC	3 cut(s)	69, 483, 565
BssT1I	CCWWGG	2 cut(s)	91, 442
Bst2UI	CCWGG	2 cut(s)	378, 588
Bst4CI	ACNGT	2 cut(s)	253, 450
Bst6I	CTCTTC	2 cut(s)	32, 382
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	385
BstDEI	CTNAG	1 cut(s)	45
BstKTI	GATC	3 cut(s)	72, 486, 568
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	3 cut(s)	69, 483, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 185
BstNI	CCWGG	2 cut(s)	378, 588
BstSCI	CCNGG	2 cut(s)	376, 586
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BtsIMutI	CAGTG	2 cut(s)	79, 277
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	446
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	1 cut(s)	267
CviJI	RGCY	6 cut(s)	11, 90, 365, 500, 558, 603
CviKI_1	RGCY	6 cut(s)	11, 90, 365, 500, 558, 603
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	3 cut(s)	71, 485, 567
DpnII	GATC	3 cut(s)	69, 483, 565
DraI	TTTAAA	2 cut(s)	39, 525
Eam1104I	CTCTTC	2 cut(s)	32, 382
EarI	CTCTTC	2 cut(s)	32, 382
Eco130I	CCWWGG	2 cut(s)	91, 442
Eco47I	GGWCC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	246
Eco88I	CYCGRG	2 cut(s)	31, 321
EcoRII	CCWGG	2 cut(s)	376, 586
EcoT14I	CCWWGG	2 cut(s)	91, 442
ErhI	CCWWGG	2 cut(s)	91, 442
FaiI	YATR	5 cut(s)	130, 171, 416, 462, 507
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	4 cut(s)	140, 420, 434, 628
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	121
HapII	CCGG	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	556
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	293, 602
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	2 cut(s)	475, 569
Hpy8I	GTNNAC	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	147, 508, 512
HpyCH4III	ACNGT	2 cut(s)	253, 450
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	150, 179, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 185
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	297
KpnI	GGTACC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	3 cut(s)	69, 483, 565
LmnI	GCTCC	1 cut(s)	550
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	2 cut(s)	265, 598
MabI	ACCWGGT	1 cut(s)	586
MaeI	CTAG	4 cut(s)	140, 420, 434, 628
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	247, 253, 355
MalI	GATC	3 cut(s)	71, 485, 567
MboI	GATC	3 cut(s)	69, 483, 565
MboII	GAAGA	9 cut(s)	19, 213, 216, 218, 248, 399, 575, 605, 614
MflI	RGATCY	1 cut(s)	565
MluCI	AATT	5 cut(s)	16, 51, 180, 327, 487
MnlI	CCTC	6 cut(s)	35, 60, 88, 124, 295, 392
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	3 cut(s)	15, 38, 524
MspI	CCGG	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	378, 588
MvaI	CCWGG	2 cut(s)	378, 588
MwoI	GCNNNNNNNGC	2 cut(s)	96, 185
NdeII	GATC	3 cut(s)	69, 483, 565
NlaIV	GGNNCC	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	385
PaeR7I	CTCGAG	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	240
PflMI	CCANNNNNTGG	2 cut(s)	92, 377
PkrI	GCNGC	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	376, 586
PspGI	CCWGG	2 cut(s)	376, 586
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	446
PspXI	VCTCGAGB	1 cut(s)	321
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	565
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	15, 38, 524
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	3 cut(s)	69, 483, 565
Sau96I	GGNCC	1 cut(s)	446
ScrFI	CCNGG	2 cut(s)	378, 588
SexAI	ACCWGGT	1 cut(s)	586
SfaNI	GCATC	2 cut(s)	265, 598
SfcI	CTRYAG	1 cut(s)	360
Sfr274I	CTCGAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	385
SinI	GGWCC	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	321
SmlI	CTYRAG	2 cut(s)	321, 541
SmoI	CTYRAG	2 cut(s)	321, 541
Sse9I	AATT	5 cut(s)	16, 51, 180, 327, 487
SspMI	CTAG	4 cut(s)	140, 420, 434, 628
StyD4I	CCNGG	2 cut(s)	376, 586
StyI	CCWWGG	2 cut(s)	91, 442
TaaI	ACNGT	2 cut(s)	253, 450
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	2 cut(s)	322, 385
TasI	AATT	5 cut(s)	16, 51, 180, 327, 487
Tru1I	TTAA	3 cut(s)	15, 38, 524
Tru9I	TTAA	3 cut(s)	15, 38, 524
TscAI	CASTG	2 cut(s)	79, 277
TseI	GCWGC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	608
TspRI	CASTG	2 cut(s)	79, 277
Van91I	CCANNNNNTGG	2 cut(s)	92, 377
VpaK11BI	GGWCC	1 cut(s)	446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	4 cut(s)	140, 420, 434, 628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.