Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005749

Physical Location & Seq

Genomic Coordinates Reverse (-)

39552871 .. 39557281

Gene Structure 4411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG305200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCCACACTGACGACGACAGTTTCTTCACAGTTCCCCTCCCTTCAATTACCCAAGTTTTCTGTAAGAAGCTACTGCACTTACGTCCTTGCTTGTCAAAATGCTACAAGACTAGGGTTCTCTACCACACCCCATCATCTGTTTACTGGGAGAAGTCTCAAGTATCTTCCTGCTATCTGTGCTGTATTGTCAGGCACAGAAGACATTGGAGTATCCTCTACTCAATCTGAAGACTTGTCTATTACCTCTACTACTTCAGGTACCAATGCTGGAGAATTTAAGATAAGCGTAGAGGTATCTGGGGCCAAAACTCAAGCAATATTCGATGACGTTTTTGACAAAATGGTTGCTGCAGCCCAGCCAATACCTGGATTTCGAAGAGTGAAAGGAGGTAGGCTTTTAAGTTATTGGAACCCTTGCGTGTTCAGATTGTATAACCACTTATGGTCATCTTCATTCTTCACAAGTCTTCATTGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trigger_N

Protein Analysis

160

Amino Acids

17.51

Weight (kDa)

8.9

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30695 AT2G30695 AT2G30695 AT2G30695
fragaria_vesca	FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770 FvH4_3g24770
malus_domestica	MD04G1048700.v1.1
prunus_persica	Prupe.1G206000_v2.0.a1
pyrus_communis	pycom04g04280
rosa_chinensis	RchiOBHm_Chr5g0044351
rosa_multiflora	Rmu_sc0004741.1_g000016
rosa_roxburghii	Rroxscaffold_1G00036610
rosa_rugosa	Rorug02G0236800 Rorug05G0213700
rosa_samantha	Rh5AG297800 Rh5BG305200 Rh5CG332200 Rh5DG314400
rosa_wichuraiana	Rw5G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	2 cut(s)	240, 249
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	3, 303
ApeKI	GCWGC	2 cut(s)	350, 353
ApoI	RAATTY	1 cut(s)	275
Asp718I	GGTACC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	303
AsuII	TTCGAA	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	260
BbsI	GAAGAC	3 cut(s)	207, 237, 461
BbvI	GCAGC	2 cut(s)	337, 365
BccI	CCATC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	369
BciVI	GTATCC	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	161
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	2 cut(s)	351, 354
BlsI	GCNGC	2 cut(s)	352, 355
Bme1390I	CCNGG	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	3 cut(s)	262, 304, 413
BmrFI	CCNGG	1 cut(s)	369
BmrI	ACTGGG	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	156
BpiI	GAAGAC	3 cut(s)	207, 237, 461
BpmI	CTGGAG	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	376
BpuEI	CTTGAG	2 cut(s)	143, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	337, 365
BseYI	CCCAGC	1 cut(s)	357
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	2 cut(s)	5, 305
BshNI	GGYRCC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	5, 305
Bsp119I	TTCGAA	1 cut(s)	376
BspANI	GGCC	2 cut(s)	5, 305
BspLI	GGNNCC	3 cut(s)	262, 304, 413
BspMAI	CTGCAG	1 cut(s)	355
BspT104I	TTCGAA	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	2 cut(s)	22, 33
Bst6I	CTCTTC	1 cut(s)	373
BstBI	TTCGAA	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	337, 365
BstV2I	GAAGAC	3 cut(s)	207, 237, 461
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	5, 305
BtsIMutI	CAGTG	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	261
CviJI	RGCY	6 cut(s)	5, 72, 305, 356, 361, 397
CviKI_1	RGCY	6 cut(s)	5, 72, 305, 356, 361, 397
CviQI	GTAC	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
Eco57I	CTGAAG	2 cut(s)	240, 249
EcoRII	CCWGG	1 cut(s)	367
FaiI	YATR	2 cut(s)	435, 445
Fnu4HI	GCNGC	2 cut(s)	351, 354
Fsp4HI	GCNGC	2 cut(s)	351, 354
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	2 cut(s)	351, 354
GsaI	CCCAGC	1 cut(s)	361
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	5, 305
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	2 cut(s)	229, 428
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	22, 33
HpyCH4IV	ACGT	2 cut(s)	84, 330
HpyCH4V	TGCA	2 cut(s)	78, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpySE526I	ACGT	2 cut(s)	84, 330
KpnI	GGTACC	1 cut(s)	264
LpnPI	CCDG	9 cut(s)	132, 177, 183, 243, 255, 285, 354, 371, 381
Lsp1109I	GCAGC	2 cut(s)	337, 365
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	2 cut(s)	84, 330
MboII	GAAGA	8 cut(s)	18, 158, 212, 242, 390, 444, 451, 461
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	47, 275
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	5 cut(s)	49, 226, 256, 286, 383
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	279, 401
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	179
NlaIV	GGNNCC	3 cut(s)	262, 304, 413
NspV	TTCGAA	1 cut(s)	376
PflMI	CCANNNNNTGG	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	352, 355
Psp6I	CCWGG	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	262, 304, 413
PspPI	GGNCC	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	355
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	279, 401
SatI	GCNGC	2 cut(s)	351, 354
Sau96I	GGNCC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	369
SetI	ASST	8 cut(s)	74, 87, 248, 262, 297, 333, 370, 394
SfcI	CTRYAG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	376
SmlI	CTYRAG	2 cut(s)	158, 312
SmoI	CTYRAG	2 cut(s)	158, 312
Sse9I	AATT	2 cut(s)	47, 275
SspI	AATATT	1 cut(s)	321
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	22, 33
TaiI	ACGT	2 cut(s)	87, 333
TaqI	TCGA	2 cut(s)	324, 376
TasI	AATT	2 cut(s)	47, 275
Tru1I	TTAA	2 cut(s)	279, 401
Tru9I	TTAA	2 cut(s)	279, 401
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	2 cut(s)	350, 353
TspDTI	ATGAA	2 cut(s)	444, 461
TspRI	CASTG	1 cut(s)	15
Van91I	CCANNNNNTGG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.