FvH4_3g24770

Bacterial trigger factor protein (TF)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005749
Physical Location & Seq
Reverse (-)
17868238 .. 17874984
6747 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24770.t11

Sequence Viewer

Length: 636 bp
ATGGCCACACTGACGACGACCACCGCCGCCGCAGTTTCCTCACACTTTATGACCTCACTTCAACCCCCCAAGCACTTTTCTGTTAGAAGCTACTGCAGTTGTGCTCTTGGTTGCCAACATGCTACAAGAGTTGGGTTCTCTTCCACACCCCATGTTCTGTTTAGCGGGAAAAGTCTCAAGTATCTTCCTGCTATCTGTGCTGTATTATCAGGCACAGAAGACATTGGAGTATCCTCTACTCAATCTGAAGACTTGTCTATTACTGCAACTACTTCAGGTTCTGGTGAATTAAAGATAAGCGTAGAGGTATCTGGGACCAAAACTCAAGCAATATTTGATCACGTTTTTGACAAAATGGTTGCTGCCGCCCAACCAATACCCGGATTTCGAAGAGTGAAAGGAGGGAAAACACCGAATATACCTAGAGATGTTTTGCTTGAAGTCCTTGGACCGTCAAAAGTATATAAACAAGTAATCAAGAAAGTGATCAACTCTACAGTAGCTGAATATGTAGAGAAGGAATGTTTAAAAGTCAGCAAGGACTTGAGAGTGGAGCAAAGCTTTGAAGATCTTGAAGCCTCTTTTGAACCCGGGGAAGAATTCAGCTTTGATGCTGTAGTTCATCTTCTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trigger_N

Protein Analysis

212

Amino Acids

22.73

Weight (kDa)

7.0

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trigger_N PF05697 87 - 176 7.5e-08 Bacterial trigger factor protein (TF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 24, 27, 30, 165, 366
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 2 cut(s) 258, 267
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 5 cut(s) 62, 440, 566, 575, 587
AluBI AGCT 4 cut(s) 90, 503, 561, 606
AluI AGCT 4 cut(s) 90, 503, 561, 606
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 179
AlwNI CAGNNNCTG 2 cut(s) 281, 503
Ama87I CYCGRG 1 cut(s) 590
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 599
AspS9I GGNCC 2 cut(s) 315, 449
AsuC2I CCSGG 3 cut(s) 381, 591, 592
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 388
AvaI CYCGRG 1 cut(s) 590
AvaII GGWCC 2 cut(s) 315, 449
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 1 cut(s) 609
BbsI GAAGAC 2 cut(s) 225, 255
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 349
BciVI GTATCC 1 cut(s) 241
BclI TGATCA 2 cut(s) 337, 486
BcnI CCSGG 3 cut(s) 381, 591, 592
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 3 cut(s) 94, 495, 615
BfuI GTATCC 1 cut(s) 241
BglII AGATCT 1 cut(s) 568
BisI GCNGC 4 cut(s) 27, 30, 363, 366
BlsI GCNGC 4 cut(s) 28, 31, 364, 367
Bme1390I CCNGG 3 cut(s) 381, 591, 592
Bme18I GGWCC 2 cut(s) 315, 449
BmeT110I CYCGRG 1 cut(s) 590
BmgT120I GGNCC 2 cut(s) 315, 449
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 3 cut(s) 381, 591, 592
BmsI GCATC 1 cut(s) 601
BpiI GAAGAC 2 cut(s) 225, 255
Bpu14I TTCGAA 1 cut(s) 388
BpuEI CTTGAG 3 cut(s) 161, 309, 565
BpuMI CCSGG 3 cut(s) 381, 591, 592
BsaJI CCNNGG 3 cut(s) 445, 590, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 380
BseDI CCNNGG 3 cut(s) 445, 590, 591
BseLI CCNNNNNNNGG 1 cut(s) 380
BseXI GCAGC 1 cut(s) 349
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 590
BsiSI CCGG 2 cut(s) 381, 591
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 590
Bsp119I TTCGAA 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 3 cut(s) 337, 486, 568
BspACI CCGC 5 cut(s) 24, 27, 30, 165, 366
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 98
BspT104I TTCGAA 1 cut(s) 388
BssECI CCNNGG 3 cut(s) 445, 590, 591
BssMI GATC 3 cut(s) 337, 486, 568
BssT1I CCWWGG 1 cut(s) 445
Bst4CI ACNGT 2 cut(s) 453, 499
Bst6I CTCTTC 2 cut(s) 145, 385
BstBI TTCGAA 1 cut(s) 388
BstKTI GATC 3 cut(s) 340, 489, 571
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 3 cut(s) 337, 486, 568
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 3 cut(s) 379, 589, 590
BstSFI CTRYAG 3 cut(s) 94, 495, 615
BstV1I GCAGC 1 cut(s) 349
BstV2I GAAGAC 2 cut(s) 225, 255
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 8
CaiI CAGNNNCTG 2 cut(s) 281, 503
Cfr13I GGNCC 2 cut(s) 315, 449
Cfr9I CCCGGG 1 cut(s) 590
CviAII CATG 2 cut(s) 119, 152
CviJI RGCY 6 cut(s) 5, 90, 503, 561, 578, 606
CviKI_1 RGCY 6 cut(s) 5, 90, 503, 561, 578, 606
DpnI GATC 3 cut(s) 339, 488, 570
DpnII GATC 3 cut(s) 337, 486, 568
DraI TTTAAA 1 cut(s) 528
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 145, 385
EarI CTCTTC 2 cut(s) 145, 385
Eco130I CCWWGG 1 cut(s) 445
Eco47I GGWCC 2 cut(s) 315, 449
Eco57I CTGAAG 2 cut(s) 258, 267
Eco88I CYCGRG 1 cut(s) 590
EcoRI GAATTC 1 cut(s) 599
EcoT14I CCWWGG 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 445
FaeI CATG 2 cut(s) 122, 155
FaiI YATR 7 cut(s) 50, 120, 153, 419, 463, 465, 510
FaqI GGGAC 1 cut(s) 328
FatI CATG 2 cut(s) 118, 151
FauI CCCGC 1 cut(s) 158
FbaI TGATCA 2 cut(s) 337, 486
Fnu4HI GCNGC 4 cut(s) 27, 30, 363, 366
Fsp4HI GCNGC 4 cut(s) 27, 30, 363, 366
FspBI CTAG 1 cut(s) 423
GluI GCNGC 4 cut(s) 27, 30, 363, 366
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 381, 591
Hin1II CATG 2 cut(s) 122, 155
HindIII AAGCTT 1 cut(s) 559
HpaII CCGG 2 cut(s) 381, 591
HphI GGTGA 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 2 cut(s) 478, 572
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 511
HpyCH4III ACNGT 2 cut(s) 453, 499
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 96, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 2 cut(s) 122, 155
Ksp22I TGATCA 2 cut(s) 337, 486
Kzo9I GATC 3 cut(s) 337, 486, 568
LmnI GCTCC 1 cut(s) 553
LpnPI CCDG 7 cut(s) 195, 201, 261, 267, 297, 394, 604
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 1 cut(s) 601
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 342
MalI GATC 3 cut(s) 339, 488, 570
MboI GATC 3 cut(s) 337, 486, 568
MboII GAAGA 8 cut(s) 132, 176, 230, 260, 402, 578, 608, 617
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 287, 599
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 6 cut(s) 49, 64, 244, 298, 395, 589
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 290, 527
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 381, 591
MspR9I CCNGG 3 cut(s) 381, 591, 592
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 3 cut(s) 381, 591, 592
NdeII GATC 3 cut(s) 337, 486, 568
NlaIII CATG 2 cut(s) 122, 155
NlaIV GGNNCC 1 cut(s) 316
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 1 cut(s) 388
PkrI GCNGC 4 cut(s) 28, 31, 364, 367
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 2 cut(s) 315, 449
PstI CTGCAG 1 cut(s) 98
PstNI CAGNNNCTG 2 cut(s) 281, 503
PsuI RGATCY 1 cut(s) 568
SaqAI TTAA 2 cut(s) 290, 527
SatI GCNGC 4 cut(s) 27, 30, 363, 366
Sau3AI GATC 3 cut(s) 337, 486, 568
Sau96I GGNCC 2 cut(s) 315, 449
ScrFI CCNGG 3 cut(s) 381, 591, 592
SduI GDGCHC 1 cut(s) 106
SetI ASST 9 cut(s) 56, 92, 280, 309, 345, 424, 505, 563, 608
SfaNI GCATC 1 cut(s) 601
SfcI CTRYAG 3 cut(s) 94, 495, 615
SfuI TTCGAA 1 cut(s) 388
SinI GGWCC 2 cut(s) 315, 449
SmaI CCCGGG 1 cut(s) 592
SmlI CTYRAG 3 cut(s) 176, 324, 544
SmoI CTYRAG 3 cut(s) 176, 324, 544
Sse9I AATT 2 cut(s) 287, 599
SsiI CCGC 5 cut(s) 24, 27, 30, 165, 366
SspI AATATT 1 cut(s) 333
SspMI CTAG 1 cut(s) 423
StyD4I CCNGG 3 cut(s) 379, 589, 590
StyI CCWWGG 1 cut(s) 445
TaaI ACNGT 2 cut(s) 453, 499
TaiI ACGT 1 cut(s) 345
TaqI TCGA 1 cut(s) 388
TasI AATT 2 cut(s) 287, 599
TauI GCSGC 3 cut(s) 29, 32, 368
Tru1I TTAA 2 cut(s) 290, 527
Tru9I TTAA 2 cut(s) 290, 527
TscAI CASTG 1 cut(s) 15
TseI GCWGC 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 611
TspMI CCCGGG 1 cut(s) 590
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 2 cut(s) 315, 449
XapI RAATTY 1 cut(s) 599
XceI RCATGY 1 cut(s) 122
XmaI CCCGGG 1 cut(s) 590
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.