AT2G30700

gpi-anchored protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
13081752 .. 13085451
3700 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30700.1

Sequence Viewer

Length: 1443 bp
ATGCCCCGGGGAGAGTTAGCTATGGGCTCTTTAGAGACTGTTTGTTGGCTTAAGGGCTGCTTGGTTTATCGCTTCTTGTTATTTATTATCTGGTTATCAAGCTTCCAAGATGTAGCTGCGCATGATAAGCTTAATGAGCATAGTAGCAGATCCACAACCTCTGAATTGGCAAATCCACCTGGTATTGGAGTATCTGGTCCCATTCAAGTATCACCGTCCGTAATCCCCAAATATGCATCCCCTGCTCTACCTTGGACACCACCAATGTACCCTACTTTTCCTGATACATATGAGCCCAAGTTAACTGGCAAATGTCCTACAGACTTTCAAGCAATTTCAAGTGTTATCGATACCGCAGCTTCTGATTGTTCCCAACCATTCGCTGCACTTGTTGGGAACGTGATATGTTGTCCGCAGTTTGTTAGCTTACTTCATATATTCCAAGGACAGCACAACGTGAAGTCGAATAAGTTGGTTCTGCCTGATGCAGTTGCTACAGATTGTTTTTCAGATATCGTTAGCATCCTGGTCAGCAGAAGAGCCAACATGACAATACCTGCACTTTGCTCTGTAACATCGTCAAATCTAACTGGAGGTTCCTGTCCAGTAACAGATGTCACAACGTTCGAGAAAGTTGTTAACAGTAGCAAATTACTGGATGCCTGTCGCACAGTTGATCCTCTGAAGGAGTGTTGTAGGCCAATTTGCCAACCTGCAATTATGGAAGCTGCGCTAATTATTTCGGGACACCAAATGACAGTTGGTGATAAGATCCCTTTAGCAGGATCAAATAACGTCAACGCAATTAACGACTGCAAAAATGTGGTGTTTTCATATCTTTCCAGGAAGCTTCCCGCAGACAAAGCAAACGCTGCATTTAGAATTTTATCGTCCTGCAAAGTTAACAAAGCTTGCCCGTTGGAATTTAAGGAGCCAACGGAAGTGATCAAGGCTTGCCGTAATGTGGCTGCTCCAAGCCCTTCCTGCTGTAGCTCGTTGAATGCATACATTTCTGGGATACAGAACCAAATGCTAATAACAAACAAGCAGGCCATAGTCTGTGCAACAGTCATCGGTTCTATGTTAAGGAAAGGTGGTGTTATGACAAATATCTATGAGCTTTGTGATGTCGATCTCAAAGATTTCAGTGTCCAAGCATATGGAATGCAACAAGGTTGTCTTCTGAGAAGCTATCCTGCAGACTTGATATTTGATAACACATCAGGCTACAGCTTTACATGTGATTTGACAGACAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCTTCTTTGTCTCTATGTGCTCCTGAGATGTCATTACCTGCCTTGCCAACATCCCAGACTATTAAAAATCACGGGTTTTGCAATGGTGGGGTTGGAGCGTTGCGTCTCATTGTTTTGGTATTTCTTCTGTATGTTGTTGTTGTGAGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

480

Amino Acids

51.56

Weight (kDa)

7.35

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPARK PF19160 102 - 244 1.3e-23 SPARK
At1g61900 PF26584 303 - 376 8.2e-32 At1g61900-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 120
Acc36I ACCTGC 3 cut(s) 565, 721, 1336
AciI CCGC 3 cut(s) 354, 413, 855
AclI AACGTT 1 cut(s) 623
AclWI GGATC 4 cut(s) 144, 671, 766, 793
AcoI YGGCCR 1 cut(s) 1271
AcsI RAATTY 2 cut(s) 882, 923
AcuI CTGAAG 1 cut(s) 704
AdeI CACNNNGTG 1 cut(s) 457
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 3 cut(s) 185, 782, 964
AflII CTTAAG 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 1238
AgsI TTSAA 4 cut(s) 206, 329, 339, 1000
AjnI CCWGG 3 cut(s) 178, 525, 842
Alw21I GWGCWC 1 cut(s) 1312
Alw26I GTCTC 4 cut(s) 29, 1305, 1400, 1429
AlwI GGATC 4 cut(s) 144, 671, 766, 793
AlwNI CAGNNNCTG 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 3 cut(s) 698, 1050, 1271
ApeKI GCWGC 8 cut(s) 57, 116, 356, 383, 728, 872, 968, 1262
ApoI RAATTY 2 cut(s) 882, 923
ArsI GACNNNNNNTTYG 2 cut(s) 1193, 1225
AspLEI GCGC 2 cut(s) 121, 733
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 2 cut(s) 7, 8
AsuHPI GGTGA 2 cut(s) 204, 776
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 197
BaeI ACNNNNGTAYC 2 cut(s) 251, 284
BalI TGGCCA 1 cut(s) 1273
BanII GRGCYC 2 cut(s) 29, 297
BbsI GAAGAC 2 cut(s) 1172, 1284
Bbv12I GWGCWC 1 cut(s) 1312
BbvI GCAGC 8 cut(s) 44, 103, 368, 370, 715, 859, 955, 1249
BccI CCATC 1 cut(s) 1282
BceAI ACGGC 1 cut(s) 942
BciT130I CCWGG 3 cut(s) 180, 527, 844
BciVI GTATCC 1 cut(s) 1011
BclI TGATCA 1 cut(s) 945
BcnI CCSGG 2 cut(s) 7, 8
BcoDI GTCTC 4 cut(s) 29, 1305, 1400, 1429
BfmI CTRYAG 5 cut(s) 318, 495, 988, 1197, 1228
BfrI CTTAAG 1 cut(s) 50
BfuAI ACCTGC 3 cut(s) 565, 721, 1336
BfuI GTATCC 1 cut(s) 1011
BisI GCNGC 8 cut(s) 58, 117, 357, 384, 729, 873, 969, 1263
BlsI GCNGC 8 cut(s) 59, 118, 358, 385, 730, 874, 970, 1264
Bme1390I CCNGG 5 cut(s) 7, 8, 180, 527, 844
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 3 cut(s) 199, 598, 933
BmrFI CCNGG 5 cut(s) 7, 8, 180, 527, 844
BmsI GCATC 4 cut(s) 245, 475, 531, 649
BpiI GAAGAC 2 cut(s) 1172, 1284
BpmI CTGGAG 1 cut(s) 612
BpuMI CCSGG 2 cut(s) 7, 8
Bsa29I ATCGAT 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 1131
BsaJI CCNNGG 6 cut(s) 5, 6, 7, 251, 442, 1268
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 782, 964
Bse1I ACTGG 4 cut(s) 310, 595, 605, 660
Bse3DI GCAATG 2 cut(s) 1257, 1378
Bse8I GATNNNNATC 1 cut(s) 1131
BseBI CCWGG 3 cut(s) 180, 527, 844
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 6 cut(s) 5, 6, 7, 251, 442, 1268
BseGI GGATG 4 cut(s) 236, 522, 664, 1340
BseJI GATNNNNATC 1 cut(s) 1131
BseLI CCNNNNNNNGG 3 cut(s) 185, 782, 964
BseMI GCAATG 2 cut(s) 1257, 1378
BseMII CTCAG 2 cut(s) 1175, 1305
BseNI ACTGG 4 cut(s) 310, 595, 605, 660
BseXI GCAGC 8 cut(s) 44, 103, 368, 370, 715, 859, 955, 1249
BsgI GTGCAG 2 cut(s) 369, 543
BshFI GGCC 3 cut(s) 700, 1052, 1273
BshVI ATCGAT 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 1312
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 2 cut(s) 183, 759
BslI CCNNNNNNNGG 3 cut(s) 185, 782, 964
BsmAI GTCTC 4 cut(s) 29, 1305, 1400, 1429
BsmBI CGTCTC 1 cut(s) 1400
BsmFI GGGAC 2 cut(s) 183, 759
BsmI GAATGC 2 cut(s) 1006, 1170
BsnI GGCC 3 cut(s) 700, 1052, 1273
BsoBI CYCGRG 1 cut(s) 6
Bsp1286I GDGCHC 3 cut(s) 29, 297, 1312
Bsp143I GATC 6 cut(s) 149, 676, 771, 785, 945, 1132
Bsp19I CCATGG 1 cut(s) 1268
BspACI CCGC 3 cut(s) 354, 413, 855
BspANI GGCC 3 cut(s) 700, 1052, 1273
BspCNI CTCAG 2 cut(s) 1176, 1306
BspDI ATCGAT 1 cut(s) 348
BspLI GGNNCC 3 cut(s) 199, 598, 933
BspMAI CTGCAG 1 cut(s) 1201
BspMI ACCTGC 3 cut(s) 565, 721, 1336
BspPI GGATC 4 cut(s) 144, 671, 766, 793
BspQI GCTCTTC 1 cut(s) 532
BspTI CTTAAG 1 cut(s) 50
BsrDI GCAATG 2 cut(s) 1257, 1378
BsrI ACTGG 4 cut(s) 310, 595, 605, 660
BssECI CCNNGG 6 cut(s) 5, 6, 7, 251, 442, 1268
BssMI GATC 6 cut(s) 149, 676, 771, 785, 945, 1132
BssT1I CCWWGG 3 cut(s) 251, 442, 1268
Bst2UI CCWGG 3 cut(s) 180, 527, 844
Bst4CI ACNGT 6 cut(s) 40, 216, 644, 673, 760, 1069
Bst6I CTCTTC 1 cut(s) 532
BstAFI CTTAAG 1 cut(s) 50
BstAPI GCANNNNNTGC 2 cut(s) 242, 872
BstC8I GCNNGC 3 cut(s) 913, 955, 1050
BstDEI CTNAG 2 cut(s) 1184, 1314
BstDSI CCRYGG 1 cut(s) 1268
BstENI CCTNNNNNAGG 1 cut(s) 780
BstF5I GGATG 4 cut(s) 236, 522, 664, 1340
BstHHI GCGC 2 cut(s) 121, 733
BstKTI GATC 6 cut(s) 152, 679, 774, 788, 948, 1135
BstMAI GTCTC 4 cut(s) 29, 1305, 1400, 1429
BstMBI GATC 6 cut(s) 149, 676, 771, 785, 945, 1132
BstMWI GCNNNNNNNGC 6 cut(s) 127, 136, 242, 863, 872, 984
BstNI CCWGG 3 cut(s) 180, 527, 844
BstNSI RCATGY 1 cut(s) 1242
BstSCI CCNGG 5 cut(s) 5, 6, 178, 525, 842
BstSFI CTRYAG 5 cut(s) 318, 495, 988, 1197, 1228
BstV1I GCAGC 8 cut(s) 44, 103, 368, 370, 715, 859, 955, 1249
BstV2I GAAGAC 2 cut(s) 1172, 1284
BstX2I RGATCY 2 cut(s) 149, 771
BstXI CCANNNNNNTGG 1 cut(s) 1160
BstYI RGATCY 2 cut(s) 149, 771
Bsu15I ATCGAT 1 cut(s) 348
BsuI GTATCC 1 cut(s) 1011
BsuRI GGCC 3 cut(s) 700, 1052, 1273
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 1268
BtsCI GGATG 4 cut(s) 236, 522, 664, 1340
BtsIMutI CAGTG 1 cut(s) 1153
BveI ACCTGC 3 cut(s) 565, 721, 1336
Cac8I GCNNGC 3 cut(s) 913, 955, 1050
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 2 cut(s) 121, 733
Cfr13I GGNCC 1 cut(s) 197
Cfr9I CCCGGG 1 cut(s) 6
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 1 cut(s) 1382
CsiI ACCWGGT 1 cut(s) 178
Csp6I GTAC 1 cut(s) 268
CviAII CATG 4 cut(s) 122, 547, 1239, 1269
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 2 cut(s) 1184, 1314
DpnI GATC 6 cut(s) 151, 678, 773, 787, 947, 1134
DpnII GATC 6 cut(s) 149, 676, 771, 785, 945, 1132
DraIII CACNNNGTG 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 1271
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco130I CCWWGG 3 cut(s) 251, 442, 1268
Eco24I GRGCYC 2 cut(s) 29, 297
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 704
Eco88I CYCGRG 1 cut(s) 6
EcoNI CCTNNNNNAGG 1 cut(s) 780
EcoRII CCWGG 3 cut(s) 178, 525, 842
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 3 cut(s) 251, 442, 1268
EcoT22I ATGCAT 2 cut(s) 238, 1006
EcoT38I GRGCYC 2 cut(s) 29, 297
ErhI CCWWGG 3 cut(s) 251, 442, 1268
Esp3I CGTCTC 1 cut(s) 1400
FaeI CATG 4 cut(s) 125, 550, 1242, 1272
FalI AAGNNNNNCTT 4 cut(s) 44, 76, 1164, 1196
FaqI GGGAC 2 cut(s) 183, 759
FatI CATG 4 cut(s) 121, 546, 1238, 1268
FauI CCCGC 1 cut(s) 862
FauNDI CATATG 2 cut(s) 289, 1159
FbaI TGATCA 1 cut(s) 945
Fnu4HI GCNGC 8 cut(s) 58, 117, 357, 384, 729, 873, 969, 1263
FokI GGATG 4 cut(s) 223, 509, 671, 1327
FriOI GRGCYC 2 cut(s) 29, 297
Fsp4HI GCNGC 8 cut(s) 58, 117, 357, 384, 729, 873, 969, 1263
FspI TGCGCA 1 cut(s) 120
GlaI GCGC 2 cut(s) 120, 732
GluI GCNGC 8 cut(s) 58, 117, 357, 384, 729, 873, 969, 1263
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 3 cut(s) 700, 1052, 1273
HapII CCGG 1 cut(s) 7
HgaI GACGC 1 cut(s) 1382
HhaI GCGC 2 cut(s) 121, 733
Hin1II CATG 4 cut(s) 125, 550, 1242, 1272
Hin6I GCGC 2 cut(s) 119, 731
HinP1I GCGC 2 cut(s) 119, 731
HincII GTYRAC 4 cut(s) 303, 640, 799, 904
HindII GTYRAC 4 cut(s) 303, 640, 799, 904
HindIII AAGCTT 4 cut(s) 100, 128, 848, 909
HpaI GTTAAC 3 cut(s) 303, 640, 904
HpaII CCGG 1 cut(s) 7
HphI GGTGA 2 cut(s) 204, 776
Hpy166II GTNNAC 4 cut(s) 303, 640, 799, 904
Hpy188I TCNGA 5 cut(s) 163, 364, 511, 684, 1185
Hpy188III TCNNGA 4 cut(s) 281, 628, 744, 1313
Hpy8I GTNNAC 4 cut(s) 303, 640, 799, 904
HpyAV CCTTC 2 cut(s) 679, 990
HpyCH4III ACNGT 6 cut(s) 40, 216, 644, 673, 760, 1069
HpyCH4IV ACGT 4 cut(s) 399, 456, 623, 795
HpyF10VI GCNNNNNNNGC 6 cut(s) 127, 136, 242, 863, 872, 984
HpyF3I CTNAG 2 cut(s) 1184, 1314
HpySE526I ACGT 4 cut(s) 399, 456, 623, 795
Hsp92II CATG 4 cut(s) 125, 550, 1242, 1272
HspAI GCGC 2 cut(s) 119, 731
Ksp22I TGATCA 1 cut(s) 945
KspAI GTTAAC 3 cut(s) 303, 640, 904
Kzo9I GATC 6 cut(s) 149, 676, 771, 785, 945, 1132
LguI GCTCTTC 1 cut(s) 532
LmnI GCTCC 5 cut(s) 931, 976, 1270, 1315, 1385
Lsp1109I GCAGC 8 cut(s) 44, 103, 368, 370, 715, 859, 955, 1249
LweI GCATC 4 cut(s) 245, 475, 531, 649
MabI ACCWGGT 1 cut(s) 178
MaeII ACGT 4 cut(s) 399, 456, 623, 795
MaeIII GTNAC 3 cut(s) 571, 607, 616
MalI GATC 6 cut(s) 151, 678, 773, 787, 947, 1134
MboI GATC 6 cut(s) 149, 676, 771, 785, 945, 1132
MboII GAAGA 5 cut(s) 549, 1172, 1269, 1284, 1406
MflI RGATCY 2 cut(s) 149, 771
MhlI GDGCHC 3 cut(s) 29, 297, 1312
MlsI TGGCCA 1 cut(s) 1273
MluCI AATT 9 cut(s) 164, 333, 650, 702, 717, 735, 804, 882, 923
MluNI TGGCCA 1 cut(s) 1273
MmeI TCCRAC 2 cut(s) 900, 1363
MnlI CCTC 3 cut(s) 169, 587, 690
Mox20I TGGCCA 1 cut(s) 1273
Mph1103I ATGCAT 2 cut(s) 238, 1006
MscI TGGCCA 1 cut(s) 1273
Msp20I TGGCCA 1 cut(s) 1273
MspCI CTTAAG 1 cut(s) 50
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 5 cut(s) 7, 8, 180, 527, 844
Mva1269I GAATGC 2 cut(s) 1006, 1170
MvaI CCWGG 3 cut(s) 180, 527, 844
MwoI GCNNNNNNNGC 6 cut(s) 127, 136, 242, 863, 872, 984
NciI CCSGG 2 cut(s) 7, 8
NcoI CCATGG 1 cut(s) 1268
NdeI CATATG 2 cut(s) 289, 1159
NdeII GATC 6 cut(s) 149, 676, 771, 785, 945, 1132
NlaIII CATG 4 cut(s) 125, 550, 1242, 1272
NlaIV GGNNCC 3 cut(s) 199, 598, 933
NmuCI GTSAC 1 cut(s) 616
NsbI TGCGCA 1 cut(s) 120
NsiI ATGCAT 2 cut(s) 238, 1006
NspI RCATGY 1 cut(s) 1242
PciI ACATGT 1 cut(s) 1238
PciSI GCTCTTC 1 cut(s) 532
PcsI WCGNNNNNNNCGW 1 cut(s) 807
PctI GAATGC 2 cut(s) 1006, 1170
PfoI TCCNGGA 1 cut(s) 842
PkrI GCNGC 8 cut(s) 59, 118, 358, 385, 730, 874, 970, 1264
PscI ACATGT 1 cut(s) 1238
Psp1406I AACGTT 1 cut(s) 623
Psp6I CCWGG 3 cut(s) 178, 525, 842
PspGI CCWGG 3 cut(s) 178, 525, 842
PspN4I GGNNCC 3 cut(s) 199, 598, 933
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 1201
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 2 cut(s) 149, 771
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 532
SatI GCNGC 8 cut(s) 58, 117, 357, 384, 729, 873, 969, 1263
Sau3AI GATC 6 cut(s) 149, 676, 771, 785, 945, 1132
Sau96I GGNCC 1 cut(s) 197
ScrFI CCNGG 5 cut(s) 7, 8, 180, 527, 844
SduI GDGCHC 3 cut(s) 29, 297, 1312
SexAI ACCWGGT 1 cut(s) 178
SfaNI GCATC 4 cut(s) 245, 475, 531, 649
SfcI CTRYAG 5 cut(s) 318, 495, 988, 1197, 1228
SinI GGWCC 1 cut(s) 197
SmaI CCCGGG 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 9 cut(s) 164, 333, 650, 702, 717, 735, 804, 882, 923
SsiI CCGC 3 cut(s) 354, 413, 855
StyD4I CCNGG 5 cut(s) 5, 6, 178, 525, 842
StyI CCWWGG 3 cut(s) 251, 442, 1268
TaaI ACNGT 6 cut(s) 40, 216, 644, 673, 760, 1069
TaiI ACGT 4 cut(s) 402, 459, 626, 798
TaqI TCGA 4 cut(s) 348, 464, 627, 1131
TasI AATT 9 cut(s) 164, 333, 650, 702, 717, 735, 804, 882, 923
TscAI CASTG 1 cut(s) 1153
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 8 cut(s) 57, 116, 356, 383, 728, 872, 968, 1262
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 3 cut(s) 422, 822, 1269
TspGWI ACGGA 2 cut(s) 208, 953
TspMI CCCGGG 1 cut(s) 6
TspRI CASTG 1 cut(s) 1153
Vha464I CTTAAG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 197
XagI CCTNNNNNAGG 1 cut(s) 780
XapI RAATTY 2 cut(s) 882, 923
XceI RCATGY 1 cut(s) 1242
XcmI CCANNNNNNNNNTGG 1 cut(s) 758
XmaI CCCGGG 1 cut(s) 6
Zsp2I ATGCAT 2 cut(s) 238, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.